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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0371100 |
| Transcript ID | LotjaGi4g1v0371100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12700.1 RNA processing FACTOR; Swiss-Prot: sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial; TrEMBL-Plants: tr|K7L603|K7L603_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0371100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75061973..75066963) extracted from Lotus japonicus Gifu genome v1.2.
GATATTGATATTAATATTGATATTGATATTGATTGATGTTAAACCTCGGCTCCAAGTAAAATACAAGGTTGCCCTATCTC TGTCCAAAACCTTAAACCCTCCGGAATTCTGCAACCTAGAACAGAGCATGGTGCACTGTTCGACTACGAAGAACAACCCA CCAACAACGTTTGCAATCGAAAATCCAAACCCTCTTCCCAGACACACAGAGAGCTTGTTTGAATGCTGCGTAGAATCGCT TCTCTCTCTCGTCTTCGTCATCTCCAACAACACATGGGTACCATCTCTATTGCAAGGTACAATGACTACCATAGTGCAAA GACAAACATCAATGAGACTGAGAGGCACAACAACAAACAGTTCCTGGACTTCATGAGAGACAACTGCAAGAAAGGTAAAG TGCGAAACCTCGATCAGGCTTTGAATTTGTTTCATTTTATGGCTAAAATGAAGCCTTTGCCGTCCGTAGCGGACTTTACT TTGTTGTTGGGGGAGATTGTCAGGATGAAGCATTACACAACTGCTATATCTTTAGTTAAGCACATGTGTTATCCGCTTCG GATTAAGGTTGATACGTTTACTCTTAATGTTGTCATCAAGTGTCTTTGCCGTTTGAATTTGGTTCGTTTCGGGTTCTCGG TCTTGGGGACTATGTTCAAGCTTGGCTTGGAGCCTTCTGTGGTGACTCATACTATTCTCATTGATGGGCTTTGTGGTAAA CGCGATATGGCTCAGGCGGTGGCGTTGGCTGATCATGTTGAGAAGATGGGATTTCTGTCGGATATTAAGATGTATGGTGT GTTGGTTAATGGGTTTTGTAAGATGGGTGACACTTCAATGGCTGTTGAATGGTTAAGGAAGATGGAAGAAAGGAATTTGA AACCTAATGTGGTGGTTTACAGCACAATTGTGGATAGTTTGTGCAAGGATGGATTGGTATCTGAGGCTTTTAATTTGTGC TCAGAGATGAGTAGCAAAGGTATTCGGCCTAATCTTGTCACTTACACTTGTTTGATTCGAGGTCTTTGCAATTTCGGACG GTGGGAGGAGGCCAGCTTGCTAATGGATGAGATGATGAAAACGGGTATGATGCCAGATTTGCAGCTGCTTAATGTTTTAG TGGATGCTTTTTGCAAAGAAGGGAAAATTATGATGGCAAAAGGCGTGATTGGCTTTATGATTCGGAGAGGGAAGGGGCCA GATGTCTTCACCTATAATTCATTGATTGATAGATATTGTTCGGAAAATAAAATGAATGAGGCCATGGGAGTGTTTAATTT AATGGTTAGTAGGGGCTGTTCACCAGACATGGTAGCTTATACTACACTTTTCCATGGATGGTGTAAGAATAAAAACGCTA ATGAGGCTATGCATCTCTTGGATGAAATGGGTAAGATGGGATTCACTCTTGATCTTGTCGGTTGGACCACTCTTATTAAT GGGTTTTGTCAAGTAGGTAAACCATTAGCTGCAAAAGAACTGTTTCTCAATATGCACAAATATGGCCAAGTTCCCAATCT CCAAACTTGTGGCGTCATATTGGATGGCCTATGTAAAGGGAATCTTTTTTCTGAGGCACTATCATTATTTGAGGCAATGG AGAAGAGTAATTTGGAACTTAATATTGTGATTTATAGTATTTTGCTTGATGGAATGTGCAGTGCTGGAAAACTGAATGAT GCATGGGAACTGTTTTCTTCTTTGCCTTCTAAAGGCTTGCAAATAAATGTTTATACTTATACCATTATGATAAAAGGTTT CTGTAAACAAGGACTTTTGGATAAAGCTGAAGACCTACTTATGAAAATGGAAGAGAATGGCTGCCCACCAGATAGCTGCT CTTACAATGTCTTTGTTCAGGGATTGCTGAGAGAAAAGGACATTGCAAGGTCAATCAAATACCTAACAATAATTGCTGAC AAAGGTTTTTCAGTAGATGCTTCCACCACAGAAATTATTTTTGACTACTTATCTACTAGTGAAGGAGACAACGGATTTCG AGAATTTTTACGCCCTAAAAGATAACACATTTCAAGAGCTTCAGTAGATGTTTATTTAAATACAGCCTCACAATTTCCTC CATATTCAATAATCTGTAGCATGTGGCACCAGAGTGAGAGTGGGCATAGGCTTCAAAACTTGCATTTTGTATACAAGACT GTCACTGTTTAAGCCCTTCCACTTGACATTTCTCTGATCAGGAGTGTTGGTCTGTACAATTGCATCAGAGCCTCTACAAC AACGTAATTATGAGTTGGATCCTCATTGCCTTCACACTTCTGAAGTTATATTTGAGCCCAAAAGCATCTTCACATTTTAA TGGTATGTATCTTAACGTCCGTTTGCACATTTACTAAGATATATCGTCTACTTAATCAAATCAGGTCTATCCCTTTGAAT TGTAGGGAGTTGAGTAATTTTTCACTTACATATGTGTTTACCTTCAAGAAAGTTCAACAACAATGCAAGTTATATTTGGA TGCATTGCGGCCACATAAAATCTATTACAAGTCAACTTTGCTAGGATATACTACCTGACAGCATAAATTGTGTCTAGGTA AATTGCATAAGAGACTAAATGTTATGCATTTGTCAAATGAATTCCGTTGATGTAAAAGAGTTTAATGAGATATAAGCTGG TTTAAGGACTCACTCCTTTTCCTGCTACCAGTATAATTTCAAATTGAATGTACACCCCATTAAATTCATTGCATCAGATC TTTCCAAAGTAGGACTGTCTGTATTGGTCTATGTTTTCATATACAAAAGGGGGATTTTTGTGGAGCACCTGAGAATTTTC TCTCTATCATGGAAATTTTTCACTCAATAGTATTGTAGTGTGCGAAAATGTTGAGTAGCTCCTGATCTTGTTTTGCAGGA GTTGGTGCATTTGGAGCATATTGCCCAAATTTAGCCTGAGATCTTTTCCTCCTTATCTTTTGTGGGATAGGCCTTTTCCC TTTAGCTTCTCTTTGGCTTTCTGTCATGGTTGTTTTATGCATTGTTTATCTCTTGAGCCAGTGCCATTTCATGTTTTGCA CATTTTCTCTTTTAATTCATTGCTTTTCCCCAAAAGAAAACTATGATAAGGAAAATATCTACTTACCTGTTAGGGAAAAT AAAATCTATGATTTCTATGTAGAAGCTTGCTGCTCTCTCTGCAAGTTCAATTAATACAGTCTTTACCATTTTTTTTCCTT TTAAAAGTTTTTCCCTAAATAGAATAATGGTTTGACTTCAAGGTTCTTGATTTGCAGATTGAGATAAAGTACTCAGAAGA TTGCAAACTGAGGCATCATTTAACAGGATTAAGACACTACAATTTCAGCTCTAGGCAGGTTTTATGGAGGTGACTAGATG GGTTCTGCTTGAAACGATGCTCCATAACGCTGGTTACGGAATTCTGTGAAATCGATGCTGACTCCTCTTATTGGCTTAGT GATAGGGTGAAGGTGTGATCTTGTCCCCTTGAAGTTTTTGTCTAGTTCTCTTGTCTATATCCAAAACATTCAGTAACACT TTGCATAGTCTTGCTTAATGCTTATGTACTTGTGGTTATTTTAGTTATGCTAACATTTAATACTTGTGCTTCTCTTTTAG TTTTATATATTTACCGCCTTATGCTTAATGTTACATAGTCTTGCTTCAATTTGAAGCTAAAGAACAGTTTTCTTGTGCCA AGGACCAGTATGAAAGTCCTTGAAGAAGAGCATGTTATACATTTAGTCAGCACTGAGATTAACAAAATGCTGTTCACAAA TCATGATTTGCATTATGATAAATGAGCTTACCTTATGTGTGCTGATATTCATTATGATAGTCTCCTACTCGCTATGATCG TTTCCTGGGGAACATTACAGGATCTGAGAGGTAATGGTTTTTGCAGAACATTTCGGTTTTCAGTATAGCATTTTTTATTT TCCAAGTTCTTCTCCTCCCTTAAACTGTACCATCCTCATTTGATTCATTTTTCTCACTAAACCGCTGTTTTTTCTTGCAA GACATGTCAAGATGTTTTTCACTCAAGAAGAAAAAATGTAGCATATAATTTCAATTTGTGGGTTGAATTAAGTCATGGTT GTACAGATGAGAATTATCTGTTTTCAGACTACCTGAAGCGTGAATAAACGTGGAATGTTCCCTTTGAGTAGTTTTATTTC GATGAACTTTCATTACCTTAAAGTTCTATAGCCTTCAAACATAAGAGCAACATAATCAAGTCAAGCTGTATGATAGTTAC GGATAGTTGAAGCAGCAAATTCATATAGATATGATTACAGGTATCTGTAATGATGCACTTGATAATTTGTAATTATTTTG TTATGTTTATTGAAAAGATAATTGCCTGAAGAAAATTTTGAAATGTTTTTGCAGACTATCATTGTGTCTGTTATGTTAAA AGAATAACCTCCTAGAGGCATTTGATGTCTAGGGGGCAAGTGTGGAAGTTACATTTCTTGTACAGGAGATGGAAGCAAAT GCTGAGGACTCTGATTTTCGGCCTTTTGTCTATGCAATACAAATCTATTTGGGCATTGGTTTAACTTTGATAATGTGTAT GAACTGGTTAATTCCATGATGTTGACAATGAAGGTTCTTGAGTCTCATGTTACTTTGATGCTCACTTCATTTGATAGTGA ATGGATGAATTAATGCGAAAGTTATCATTTTCTAGTGTAGTACTTCAATATTAATTAGTTATTTGTGTCCCCTTTTTGGA TTGTGTTTCCATGAACCAGTAACTGAGAATGCTAACTAGCTTGTTTCATTATTTGATATGAATGGTTTGTGAGAGGTATT GTGGTCCTGTCCATCCCAACAAACCTTGACATTTTGATTGAAAGAGCTAGAAGCAACTCGACAAATTGAACTGAAGGGAA TTGAAATACAGTGTAAGATTCAGGCATTAAAGATTACAACAGATTCAGATTTTTATAGTGAGGAGAGATTAGTTCAAATG AGGATTAAGTACAACCCTGATGCCTCATCTT
CDS sequence (LotjaGi4g1v0371100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCGTAGAATCGCTTCTCTCTCTCGTCTTCGTCATCTCCAACAACACATGGGTACCATCTCTATTGCAAGGTACAA TGACTACCATAGTGCAAAGACAAACATCAATGAGACTGAGAGGCACAACAACAAACAGTTCCTGGACTTCATGAGAGACA ACTGCAAGAAAGGTAAAGTGCGAAACCTCGATCAGGCTTTGAATTTGTTTCATTTTATGGCTAAAATGAAGCCTTTGCCG TCCGTAGCGGACTTTACTTTGTTGTTGGGGGAGATTGTCAGGATGAAGCATTACACAACTGCTATATCTTTAGTTAAGCA CATGTGTTATCCGCTTCGGATTAAGGTTGATACGTTTACTCTTAATGTTGTCATCAAGTGTCTTTGCCGTTTGAATTTGG TTCGTTTCGGGTTCTCGGTCTTGGGGACTATGTTCAAGCTTGGCTTGGAGCCTTCTGTGGTGACTCATACTATTCTCATT GATGGGCTTTGTGGTAAACGCGATATGGCTCAGGCGGTGGCGTTGGCTGATCATGTTGAGAAGATGGGATTTCTGTCGGA TATTAAGATGTATGGTGTGTTGGTTAATGGGTTTTGTAAGATGGGTGACACTTCAATGGCTGTTGAATGGTTAAGGAAGA TGGAAGAAAGGAATTTGAAACCTAATGTGGTGGTTTACAGCACAATTGTGGATAGTTTGTGCAAGGATGGATTGGTATCT GAGGCTTTTAATTTGTGCTCAGAGATGAGTAGCAAAGGTATTCGGCCTAATCTTGTCACTTACACTTGTTTGATTCGAGG TCTTTGCAATTTCGGACGGTGGGAGGAGGCCAGCTTGCTAATGGATGAGATGATGAAAACGGGTATGATGCCAGATTTGC AGCTGCTTAATGTTTTAGTGGATGCTTTTTGCAAAGAAGGGAAAATTATGATGGCAAAAGGCGTGATTGGCTTTATGATT CGGAGAGGGAAGGGGCCAGATGTCTTCACCTATAATTCATTGATTGATAGATATTGTTCGGAAAATAAAATGAATGAGGC CATGGGAGTGTTTAATTTAATGGTTAGTAGGGGCTGTTCACCAGACATGGTAGCTTATACTACACTTTTCCATGGATGGT GTAAGAATAAAAACGCTAATGAGGCTATGCATCTCTTGGATGAAATGGGTAAGATGGGATTCACTCTTGATCTTGTCGGT TGGACCACTCTTATTAATGGGTTTTGTCAAGTAGGTAAACCATTAGCTGCAAAAGAACTGTTTCTCAATATGCACAAATA TGGCCAAGTTCCCAATCTCCAAACTTGTGGCGTCATATTGGATGGCCTATGTAAAGGGAATCTTTTTTCTGAGGCACTAT CATTATTTGAGGCAATGGAGAAGAGTAATTTGGAACTTAATATTGTGATTTATAGTATTTTGCTTGATGGAATGTGCAGT GCTGGAAAACTGAATGATGCATGGGAACTGTTTTCTTCTTTGCCTTCTAAAGGCTTGCAAATAAATGTTTATACTTATAC CATTATGATAAAAGGTTTCTGTAAACAAGGACTTTTGGATAAAGCTGAAGACCTACTTATGAAAATGGAAGAGAATGGCT GCCCACCAGATAGCTGCTCTTACAATGTCTTTGTTCAGGGATTGCTGAGAGAAAAGGACATTGCAAGGTCAATCAAATAC CTAACAATAATTGCTGACAAAGGTTTTTCAGTAGATGCTTCCACCACAGAAATTATTTTTGACTACTTATCTACTAGTGA AGGAGACAACGGATTTCGAGAATTTTTACGCCCTAAAAGATAA
Protein sequence (LotjaGi4g1v0371100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRRIASLSRLRHLQQHMGTISIARYNDYHSAKTNINETERHNNKQFLDFMRDNCKKGKVRNLDQALNLFHFMAKMKPLP SVADFTLLLGEIVRMKHYTTAISLVKHMCYPLRIKVDTFTLNVVIKCLCRLNLVRFGFSVLGTMFKLGLEPSVVTHTILI DGLCGKRDMAQAVALADHVEKMGFLSDIKMYGVLVNGFCKMGDTSMAVEWLRKMEERNLKPNVVVYSTIVDSLCKDGLVS EAFNLCSEMSSKGIRPNLVTYTCLIRGLCNFGRWEEASLLMDEMMKTGMMPDLQLLNVLVDAFCKEGKIMMAKGVIGFMI RRGKGPDVFTYNSLIDRYCSENKMNEAMGVFNLMVSRGCSPDMVAYTTLFHGWCKNKNANEAMHLLDEMGKMGFTLDLVG WTTLINGFCQVGKPLAAKELFLNMHKYGQVPNLQTCGVILDGLCKGNLFSEALSLFEAMEKSNLELNIVIYSILLDGMCS AGKLNDAWELFSSLPSKGLQINVYTYTIMIKGFCKQGLLDKAEDLLMKMEENGCPPDSCSYNVFVQGLLREKDIARSIKY LTIIADKGFSVDASTTEIIFDYLSTSEGDNGFREFLRPKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 43 | 80 | 38 | 5.294 | ||
| Gene3D | 55 | 214 | 160 | 4.0E-29 | ||
| SUPERFAMILY | 55 | 569 | 515 | 6.41E-6 | – | |
| PANTHER | 62 | 311 | 250 | 4.7E-141 | – | |
| PANTHER | 62 | 311 | 250 | 4.7E-141 | – | |
| ProSiteProfiles | 117 | 151 | 35 | 9.712 | ||
| Pfam | 117 | 164 | 48 | 9.3E-10 | ||
| TIGRFAM | 119 | 152 | 34 | 0.0021 | ||
| ProSiteProfiles | 152 | 186 | 35 | 8.254 | ||
| ProSiteProfiles | 187 | 221 | 35 | 11.871 | ||
| TIGRFAM | 190 | 223 | 34 | 2.3E-7 | ||
| Pfam | 190 | 218 | 29 | 1.1E-5 | ||
| Gene3D | 215 | 285 | 71 | 6.1E-25 | ||
| Pfam | 221 | 270 | 50 | 2.8E-17 | ||
| ProSiteProfiles | 222 | 256 | 35 | 12.211 | ||
| TIGRFAM | 224 | 257 | 34 | 8.1E-8 | ||
| ProSiteProfiles | 257 | 291 | 35 | 13.132 | ||
| TIGRFAM | 259 | 292 | 34 | 5.0E-9 | ||
| PANTHER | 264 | 389 | 126 | 4.7E-141 | – | |
| PANTHER | 264 | 389 | 126 | 4.7E-141 | – | |
| Gene3D | 286 | 354 | 69 | 2.2E-15 | ||
| ProSiteProfiles | 292 | 326 | 35 | 9.383 | ||
| Pfam | 297 | 323 | 27 | 0.0051 | ||
| PANTHER | 319 | 445 | 127 | 4.7E-141 | – | |
| PANTHER | 319 | 445 | 127 | 4.7E-141 | – | |
| Pfam | 326 | 375 | 50 | 1.5E-17 | ||
| ProSiteProfiles | 327 | 361 | 35 | 13.515 | ||
| TIGRFAM | 329 | 362 | 34 | 5.9E-11 | ||
| Gene3D | 355 | 426 | 72 | 7.5E-19 | ||
| ProSiteProfiles | 362 | 396 | 35 | 11.148 | ||
| TIGRFAM | 364 | 397 | 34 | 4.0E-6 | ||
| PANTHER | 378 | 575 | 198 | 4.7E-141 | – | |
| PANTHER | 378 | 575 | 198 | 4.7E-141 | – | |
| Pfam | 397 | 445 | 49 | 4.2E-11 | ||
| ProSiteProfiles | 397 | 431 | 35 | 10.95 | ||
| TIGRFAM | 401 | 432 | 32 | 3.1E-6 | ||
| Gene3D | 427 | 495 | 69 | 1.3E-17 | ||
| ProSiteProfiles | 432 | 466 | 35 | 10.293 | ||
| TIGRFAM | 435 | 467 | 33 | 8.5E-6 | ||
| ProSiteProfiles | 467 | 501 | 35 | 11.071 | ||
| Pfam | 467 | 515 | 49 | 4.5E-17 | ||
| TIGRFAM | 469 | 502 | 34 | 3.6E-6 | ||
| Gene3D | 496 | 568 | 73 | 1.4E-16 | ||
| ProSiteProfiles | 502 | 536 | 35 | 14.228 | ||
| TIGRFAM | 504 | 538 | 35 | 8.9E-12 | ||
| ProSiteProfiles | 537 | 571 | 35 | 7.476 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0371100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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