Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0371300 |
| Transcript ID | LotjaGi4g1v0371300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat Stress Transcription Factor family protein; TAIR: AT4G13980.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5; TrEMBL-Plants: tr|I1K3S2|I1K3S2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0371300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75071439..75075674) extracted from Lotus japonicus Gifu genome v1.2.
ATATTACAAGCCCATGGTAACAAAAAGGCTTAATAGCTTTTTTGGTCCCTAACGTTTCACGATTGGCAAGCTTGGTCCCT CCAGGAATTTTTTAGCCTGAAACGTCCCTCACGTTCACTAACCGTTGTAATTTTGGTTTTCCGTCCACTTCCGTTAAATA TTTAACGGTTTTTATTAAAAATTAATAAAAAAATAAAACAGCACCTTCAACATGTTCATCAATCTTCATCTTCTTCATCA TCTTACCCAGGAAGAAAAAAACTCAAAATTCACAAAAGTAAATCTCAAAACAACTTATTCAGCAAAAGCAACAAACTTTA TCTGAGAAAGAAGAAAAAAAAATCAGAGAAATTTCCATAACCAATCCACAACATCACCCCTTCAAAACCCAAGAACAACA ACCCGAGAACCCCCCAGAACCCATCAAAATCCAACAACAAAACCCATAACCCACCACCCCCCACCGACAAAGGTGACAGC GGCGCGATCTGGAACTCGTAGGAGTGGTGGGGGCGTGACGGATCTTGGGTGGTTGTGGCTCGGTGACGCGATTTAAGGGA GGAGGAGATGGTGGCCGACGGCTATTGGGTTGACAGAGGGGAAGAGAAGAGCTAGGGTTTTTTATTTTGGTTGAATGTTG GGAGAGAAACTGAAGCATCTTGAAGATGCTGGAATTTTATTTTTATTTTTTTATATTAATTTTTTATTAATCTTCTAATA AAAAACTATTAAATATTTCTTTTATATTTATTTTTTTAATTAAAAACCGTCAAATGTTGGACGGAAAATTAAAATTGCAA CGGTTAGTGAACGTGAGGGACGTACTAAGCTAATAAATTCCTGGAGGGACCAACCTTGCCAAATCGTGAAACGTTAGGGA CCACAAAAGCTATTAAGCCTAACAAAAATATAGAACAGATTTTTGCTTGAGCAAACGCCAACTACGACCAGCAAAGCAGC CTTTGAAGTCAAACTCAAACCTTTCTCCCTTCATCTTCTCTCTGCTTCTCTGTCTTCACAAACACAAACAAACCCCAACA ACAGATTCTAGAAAGATCGATTCCCAAATGGACGGAGCGCCACCCTCCTCCGCCGCCGGAACCGGAGGCCCGGCGCCGTT CCTTCAGAAGACCTACGACATGGTCGACGATTCCTCCACCGACGACATCGTTTCTTGGAGCTCCACCAACAACAGCTTCG TCGTCTGGAACCCACCCGAGTTCGCTCGCCTCCTTCTCCCGACGTATTTCAAACACAACAACTTCTCCAGCTTCATCCGC CAGCTCAATACCTACGTGAGTTCCTTCCATTCCATTCCATTCAATTCAATTCAATTCCCCCTTGTTTTGTTCCAAGATTC ATCATGCTCCTTGTCTTTCACTCTGATTCAATTGCTTGCTATGATTCTTGAATCTTGATTACTAGGTTTTTTTGTTTTTG TAACTTATTGCTGTCTGATGTGCATGATGATTGGTGATCATTACCAGATTGAGATGAAAATTGTTAATTGATTAGAAAAT TTGGACCTGATGGGGTCTATCTTAATGTAGCTGAAAGCTTTGTTAAGCTTTGAAAATGTTGGCAGTGTTGGAAGATAGGG TGTGATGAGAGGTAGTAGTTTAGTTTTTTTTTAAAGCTTATTTTTGTGTGGGGAAGAGGGGTGGAGTGTGGATTTGGGTA ATAAAAGACTAATCAGTGTTATCAAATAGCGGCTATAGCGGCGGCATAGCGGATTTTGGCTAATCGCGACGCCGCTATTG CTCACTATAGCGCGCTATTCGCTGCTAAATAGCGGCTGAAATAGCGGATTTTTGGCTCACCGTGATGGTCGGCGATCGCG ATTTGACAACACTGGGACTAATAGCATGTTTGAGTCAAATTATTTGTCCTCGTAATCAGTTCTGAAACTCAGAAACTACT TGCATAAGTTTCTTTTCAGAATTTATTCTAGCTTCGGTGCCAATTGTAGAAGGATTTCCAGGCATGCGTATGAGGATTGT GATAAAAGAAAGTCTTATGCAGGACCTTGCTTTATTTCATACTCAAAGAAGTGCTAGAAAACTTGGGTTTCTTTGGTAGA GATTTTTTTTCTTTAGTTTTGTTTTCTTGTTTTCACTTGTAATTATAACAATGCCACCATATTTTCAGAATACTTTTATA TTAACATTTTTGATGTTTTGTTTTGACTTAGCTAATGTGTTGCCTTGGAGCCCTAATCCTTCAAATTCCCCATTTATTAT ATACTATAACCATAATTATAATTCTTTATCTTTAATAGTTAATACTACTTCCCGGGTACATCCTAGGCTACTCAAACATC CAGGTTTCTACTTTATAGGTATAGCTCCAGGAAATAAAAAATGACAAAACCAAGAGTTTTAATCTTGTAATTTTTTATTG AACCAATTCAAATTGATATCAAAGTATTTTTGGGGTAGGAATTTTTAAATCATGCACATGTGTGATGTATGGTGATGATT TAAGATCAAGGCCCAGTGCCTGCTTTTGCTGTATGAAGGCTCTCTTTTTGGTAAAGAGTATACTTGTAAGGCTCTAATTG TAAATCATTCAAAGATTGTTGATCTTGTAGCTTGAAGAATAAATAATTGTATATGGGCAGTTATTCTTATTGCTTATTTA TATGTATTCTTTTACCAGGGATTTAGAAAAATACATCCTGAGCGATGGGAGTTTGGTAATGATGATTTTATAAAAGATCA AAAGCATCTTCTTAAGAATATACACCGCAGGAAACCTATCCACAGTCACAGTCATCCTCCAGGTTCTCTTGTAGATCCAG AAAGGTCAGCATTTGAGGAAGAAATAGAGAAACTTTTACGTGAGAAAAATTCTCTTGAATCCAATATTTTTAACTTCATA CAACATCAGTCAACAGCAAAGCATCGACTCGAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACAACT GCTGAACTTCTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTAT CGGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATGTTGATCAGTTGCAGCCAGTTGTCGAAAGTAGCTCTGTTGAC AATCATAGCAATTTTAGAATGGAATTTGGGAATGTTATTCATCACGATTTCTCAAATAAGCTCAGACTGGAATTGTCACC AGCTGTTTCAGATATGAACTTAGTATCACATAGCACACAAAGTTCAAATGAAGACGGAGAAAGCCCACAGAATAAGCTGT CTGAAGGAGAACTGAAAGGAGTCCAGACGAGAACGGCTCTTGCTTTTGCACCTGAGACGTTAGAGCTTGCAGATACTGGG ACATCTTTTACTTTTAAGATGGATCCATGTTTATCACAGAGAACGACAACTGCTGAAAGCTCGAAGCTGCACTCTATGGA GCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTAGCGTCTTGTCCGTTACCAGCCAACA GAAACTCATACTCAGCCAGATCACCCCAAATAGATTGTCAAGAAATTGGCAAAATTGCTGAATCAAGATTTTATGCCAGT GGTAAAGAATCTGATATTGGAGTTTCCTCAAACCAAAATGTAGCTAATGAGGTTACCAATTTAGCTGCTCCAACTCCAAG TAGCAACCAAGTCAGCCCAGCTGCTCCAGATAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGCT GTTCGGACAATGAAGAGGCGATATCCAACTATCGAGCCAACCCATACGATGAGCAAGAGGAAGGGAGATCAGTTCATGGA ATCTCTAGAAACATTAAGGGTATGGATCAGCTCACACTTTGAGCAAGCTATCTTGAAGTACTAGTTATACTAATGGTATG TGAAATTCCCATGATTAATATACTTAGTTATGAGCCTCGACAACTAGTTGTGTTGTAAAGGGCTGAAACTTTTTCATGCA AAATTATGTTTAAGTTTTGTGGCTTACTACGTAATGTCTCTTGTGAAAAGTCTGAAATTCATGCTAGGCTTCAAAGATTG ATGCGTACTATGTTAATCCTGACAGTGTTGTATATATTAAAAGTTTAGAATTGAATTTTTTTTTACATTCAACTCAAATA CTCCAACCCATTACATTACCACTTTCAAAAAAAAAAAATACATTACCTATCTATAATAATATTGAAGATGTTGGAT
CDS sequence (LotjaGi4g1v0371300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGGAGCGCCACCCTCCTCCGCCGCCGGAACCGGAGGCCCGGCGCCGTTCCTTCAGAAGACCTACGACATGGTCGA CGATTCCTCCACCGACGACATCGTTTCTTGGAGCTCCACCAACAACAGCTTCGTCGTCTGGAACCCACCCGAGTTCGCTC GCCTCCTTCTCCCGACGTATTTCAAACACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGATTTAGAAAA ATACATCCTGAGCGATGGGAGTTTGGTAATGATGATTTTATAAAAGATCAAAAGCATCTTCTTAAGAATATACACCGCAG GAAACCTATCCACAGTCACAGTCATCCTCCAGGTTCTCTTGTAGATCCAGAAAGGTCAGCATTTGAGGAAGAAATAGAGA AACTTTTACGTGAGAAAAATTCTCTTGAATCCAATATTTTTAACTTCATACAACATCAGTCAACAGCAAAGCATCGACTC GAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACAACTGCTGAACTTCTTCGAGAAGGCTCTTCAGAA TCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCGGCTTATAATAAGAAAAGGCGATTGCCTC AGGTTGATGTTGATCAGTTGCAGCCAGTTGTCGAAAGTAGCTCTGTTGACAATCATAGCAATTTTAGAATGGAATTTGGG AATGTTATTCATCACGATTTCTCAAATAAGCTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTATCACA TAGCACACAAAGTTCAAATGAAGACGGAGAAAGCCCACAGAATAAGCTGTCTGAAGGAGAACTGAAAGGAGTCCAGACGA GAACGGCTCTTGCTTTTGCACCTGAGACGTTAGAGCTTGCAGATACTGGGACATCTTTTACTTTTAAGATGGATCCATGT TTATCACAGAGAACGACAACTGCTGAAAGCTCGAAGCTGCACTCTATGGAGCCAAGTAGTGAAGAAGGTGATAGTCATAT ATCCTGCCAACTAAATTTAACTCTAGCGTCTTGTCCGTTACCAGCCAACAGAAACTCATACTCAGCCAGATCACCCCAAA TAGATTGTCAAGAAATTGGCAAAATTGCTGAATCAAGATTTTATGCCAGTGGTAAAGAATCTGATATTGGAGTTTCCTCA AACCAAAATGTAGCTAATGAGGTTACCAATTTAGCTGCTCCAACTCCAAGTAGCAACCAAGTCAGCCCAGCTGCTCCAGA TAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGCTGTTCGGACAATGAAGAGGCGATATCCAACT ATCGAGCCAACCCATACGATGAGCAAGAGGAAGGGAGATCAGTTCATGGAATCTCTAGAAACATTAAGGGTATGGATCAG CTCACACTTTGA
Protein sequence (LotjaGi4g1v0371300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGAPPSSAAGTGGPAPFLQKTYDMVDDSSTDDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRK IHPERWEFGNDDFIKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERSAFEEEIEKLLREKNSLESNIFNFIQHQSTAKHRL EDFQQRLDGMEKRQKQLLNFFEKALQNPTFVEHLSRKIESMDLSAYNKKRRLPQVDVDQLQPVVESSSVDNHSNFRMEFG NVIHHDFSNKLRLELSPAVSDMNLVSHSTQSSNEDGESPQNKLSEGELKGVQTRTALAFAPETLELADTGTSFTFKMDPC LSQRTTTAESSKLHSMEPSSEEGDSHISCQLNLTLASCPLPANRNSYSARSPQIDCQEIGKIAESRFYASGKESDIGVSS NQNVANEVTNLAAPTPSSNQVSPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRNIKGMDQ LTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 466 | 456 | 2.9E-88 | – | |
| PANTHER | 11 | 466 | 456 | 2.9E-88 | ||
| Gene3D | 13 | 108 | 96 | 1.2E-36 | ||
| SUPERFAMILY | 14 | 107 | 94 | 8.16E-36 | ||
| SMART | 14 | 107 | 94 | 3.8E-60 | ||
| PRINTS | 18 | 41 | 24 | 2.2E-19 | ||
| Pfam | 18 | 107 | 90 | 3.2E-29 | ||
| PRINTS | 56 | 68 | 13 | 2.2E-19 | ||
| ProSitePatterns | 57 | 81 | 25 | - | ||
| PRINTS | 69 | 81 | 13 | 2.2E-19 | ||
| Coils | 125 | 145 | 21 | - | – | |
| Coils | 153 | 173 | 21 | - | – | |
| MobiDBLite | 265 | 279 | 15 | - | – | |
| MobiDBLite | 265 | 288 | 24 | - | – | |
| MobiDBLite | 326 | 345 | 20 | - | – | |
| MobiDBLite | 459 | 483 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0371300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…