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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374200 |
| Transcript ID | LotjaGi4g1v0374200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF538 family protein, putative (Protein of unknown function, DUF538); TAIR: AT5G19860.1 transmembrane protein, putative (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|G7LHY2|G7LHY2_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi4g1v0374200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75355714..75359277) extracted from Lotus japonicus Gifu genome v1.2.
CACCAATTTTTTTGGTAGTATAAAACAAGCACATGGTCTATGTTGATATTTAAAATTGAAAGGGGGAAGACTCGAGGACG AAACATAGCAGCATCATCGTTACTCTCTAGCACTTTGCCACCGCCACTATTCTCCTTCTCTCAATCCATGGCAGCAAACG CGCCTCACGCGCTGTTCATCGTCGCAACCATCTTCACCCTCCTCTCTTCATCTCTCACCCTCTCCACCGCCGAAGAAACG GCCTACGACATCCTCCCCAAGTACGGCCTCCCCAGCGGCCTCTTACCGGACACCGTCACCGGGTACACCCTCTCCGACGA CGGCCGATTCGTCGTCAATCTGGCCAAGACGTGCTACATCAAGTTCGACTACATGGTTTACTACGAGAAGACCATCACCG GTAAGCTCAGCTACGGCGCCATCACCGACCTCAAGGGGATACAGGTCCAGCGGTTGCTGATTTGGTTCAACGTTGACGAG ATCAGGGTCGATTTGCCTCCTTCTGATAGTATCTACTTCCAGGTTGGGATCATCAACAAGAGGCTTGACATTGACCAGTT CAAATCTGTTCGGTCTTGCCGCAAATCCCTAGCTTCTTCTTCCCCTTGCCATGGAAATCCAATCACATCATCAGTGGTAT TTTGATTTTATCATTTCCTAATTTCTTGTTTCAGCTGTTAATTTTGATTTAATTTGTTTTTTTTTTTCAAATTTTATTGT GAGCTTGTGAATTGTTATCTTATTTAATGTTTCTGGAACAGTAGATTAGGTTTAAATTTTGATAAGGGGTTAGGGGTTGC TCTTGATTTAGTGGAATTAGGAGAGAGGTCCTTTGTTTGTGTGTCAATGCTGGATCTTGTTGTGTTTGGTTTTACTATTT TCAGGATCTTCACAACTAGGTTAGGTTTGACATGTGACAGAGCATGGCTTTATAAATAGTGTTTGAGATTTTGTTGGTAG TTTGAGGGGATGATGTTCCAGTTCAAGGACCCTATTAGATGCTTGTGAGACTATGTTATGCTCCACTTGACCAACAGATT GTGGTTAGGGGTAGCTCACTTGGTGAGCTAACAGAAATGAAGAAATTTGCTGGGTGAAGGGTCAGGGATCAAACCCTGGC GAATGAACTAATTTACTAACAATTAACAACTAACATTTGCCTATTAAAAAAAGTAGGGTGTGAGGTTAAGGTGGAATAAA TAGTTGTTATATATGGTTATTGAATTAGATTCATGTTGGCTATATTAATTGCTACTATTAAAGGAAAAATATAATCGGAT TTGGCTCCTTTATGCTTTGTTTGGATGCAGAGGTGAAAATGAGTGGAAGAAATGTAAGAGGAAGAAATATAAAAGGAAAT AATATGAACGGAAAATGAGATGATTTTTAAGTTGTTTGGATTTGTGGAAAAGGATGAGAGAATGAAAGGAAAAGTGAAAG TAATGATTGTATAATTATTGATTATTCAATATATAATTTAATTAAAAAACCAAAAAGTGCATTTAACTTCACAACAATAT ATATTTATAATGAAAAATATTCAACTTCACATGCATCAAGACACCTACACGGCCTTTTGTCATTTTTCTTGCCAAGGATG GGTGGAAAACTTTTAATCCACTATTCACCATCCATTTTCCTTCCCCCTCCATTTTCATGTCTCCCCAAAACAGCCCAAGA TTCCATTTTCCACTCATTTTCATGCTTAACAACTTCCTTCCTTGCAAAATGACCACAAACAAACAGACTGTTAAAGTAAG CTAGTTCACTCTAGAGAGAAAAGCTAGGTATCTCAATTGTTAATAAGAAATATTTTGAGAGTAAATTTAGCGAATTCATG ATTTCTTATGCATGTCATGAAATATGGACATCTTAATTTTTCTCATCACTTTCTGGGATTTCTTACTTTAATCTTTAAAG AAAGGATTTATCTATAGGAGTCAAATTATACTTTTAGATGATGTGATGAGGGTGTTTGGATTTCCTTTGGACAGAAATAG TTAGTTGATGTGTGTGGTTCCAGCCCAAATATTTTTATGTAAGTATTGAAGCTCTGTATGGGAAGATGCTATTAGCTTTT CTGTTTGAATTTTGATGGGAATCTTTGAACTCATATATCAGTTTCAATTTGATATTATCTGCAATTAGCTTCCTTAAAGG TGTGATTTATGCTATAAGATTCAGGGGTGCTGTGTATGTTATGAGGCATAGATCAACTATACTAGTTTTTAGAAAATATA AGGTATGGTTGATGCGGTTAATAAATGCCCTACAAGGCTGTTCTAGGAACATTAAGATGCCATGTATGTAGTTGGTGAAA TATTGAATAATATTGCTGGGTGTTCAGCTGTTTAGTTAAGGCTCTAGTTGCCCCACAGTTGCTTAGTTTTGACAATTTTA CTTGAGCACTTTCTACTTAGATTGAATATCTAATGGTGAGTGGAATGAAATAAAATGAGATGGAACACAATAGAATGAAG TTATCGTTTTATTATTTGGATATTTTTGTAATCGAAAAGAAGAAAAAGAGTCATGCCATCTCATATTCCCAACCTGAAAG GGATGAGGAGGGTATTGGATGGAAAAAAAATGGAATACATTACCATATGTTAAGTGTTAACTAAACAGTATGCCCCTTAG AATATGCACAGGCAGCCATGAAGTGATGTTATTGAATTCACTCTCACTCATATCAGTTTGTGTAATAACATGTGAATGAA ACTTTTATTATGAATTGAGGTAAAAGTCTCTTCACATTGCACTCAATTGGTATTACAGACTAAATCTTAGGACTCCTCAG CCTATGTGACATCAGTTTGATTGTGGTTACTAGTTGCTTTCGAAACATATATGTGTTTCTCAGAACTACAAGTTTTCCAC AAATTAAATGCATACAGCTATTCAGTTTGATGAAATGATCATGCAATTATCTACAATCTTTTCCCCCTGCCTTTGATACT ATGTGTTTGGACAGTTAATCGTAGTCTGAGAAAAACTAACTAATACAACTTTTTGCAACTTGCAGCTTCCTGAACCAGTG AAGGAAATTCCGATGCTTCTCACGGAGTAGATGTCATTTGATACTGCAGTTTTATGGCTTGATGAAATGACATTTTAATC TGTCAGTGTACTACTATTGCCTCGCAGAGTCAACACTCACCATTGTGAGTCTGGTTGCGTTATGTAATATCCTTATGAAA CCCTTGAGAACCTATAAAGTATATATGTAAGTTCTGAGATTTCAATTTCAGGTTTGTTGTCTGTTTCTCGTAACGCTAAG ATTTGTAAGTGCTTTATAATGGATGGCAAAATCGAATCATGCTAAAACTAAAAAGGACTTGGAGTGGTACCTCCAATATA GTGACTTATTATCGAGAAAAAAAATACATTATGGAAATGCTTTAGAATATGAGTTTTTTCCCCATCTGCGGAGGAATGAA ATGATAACAAACATTATAACAAGAAAGCATTAGCTAAAAGTATCAAGGAAAGCTGTGGGGCGAAAATTGAACCCATTGAG CAAAACTAATAATGACTTATTGGAGGAGGCAACATAATTTTTTT
CDS sequence (LotjaGi4g1v0374200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATATTTAAAATTGAAAGGGGGAAGACTCGAGGACGAAACATAGCAGCATCATCGTTACTCTCTAGCACTTTGCC ACCGCCACTATTCTCCTTCTCTCAATCCATGGCAGCAAACGCGCCTCACGCGCTGTTCATCGTCGCAACCATCTTCACCC TCCTCTCTTCATCTCTCACCCTCTCCACCGCCGAAGAAACGGCCTACGACATCCTCCCCAAGTACGGCCTCCCCAGCGGC CTCTTACCGGACACCGTCACCGGGTACACCCTCTCCGACGACGGCCGATTCGTCGTCAATCTGGCCAAGACGTGCTACAT CAAGTTCGACTACATGGTTTACTACGAGAAGACCATCACCGGTAAGCTCAGCTACGGCGCCATCACCGACCTCAAGGGGA TACAGGTCCAGCGGTTGCTGATTTGGTTCAACGTTGACGAGATCAGGGTCGATTTGCCTCCTTCTGATAGTATCTACTTC CAGGTTGGGATCATCAACAAGAGGCTTGACATTGACCAGTTCAAATCTGTTCGGTCTTGCCGCAAATCCCTAGCTTCTTC TTCCCCTTGCCATGGAAATCCAATCACATCATCAGTGCTTCCTGAACCAGTGAAGGAAATTCCGATGCTTCTCACGGAGT AG
Protein sequence (LotjaGi4g1v0374200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIFKIERGKTRGRNIAASSLLSSTLPPPLFSFSQSMAANAPHALFIVATIFTLLSSSLTLSTAEETAYDILPKYGLPSG LLPDTVTGYTLSDDGRFVVNLAKTCYIKFDYMVYYEKTITGKLSYGAITDLKGIQVQRLLIWFNVDEIRVDLPPSDSIYF QVGIINKRLDIDQFKSVRSCRKSLASSSPCHGNPITSSVLPEPVKEIPMLLTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| Phobius | 16 | 26 | 11 | - | – | |
| Phobius | 27 | 34 | 8 | - | – | |
| Phobius | 35 | 43 | 9 | - | – | |
| SUPERFAMILY | 43 | 181 | 139 | 4.32E-41 | ||
| Phobius | 44 | 64 | 21 | - | – | |
| PANTHER | 46 | 199 | 154 | 1.1E-54 | – | |
| PANTHER | 46 | 199 | 154 | 1.1E-54 | ||
| Gene3D | 55 | 182 | 128 | 2.5E-33 | ||
| Phobius | 65 | 213 | 149 | - | – | |
| Pfam | 68 | 175 | 108 | 4.7E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0374200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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