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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374500 |
| Transcript ID | LotjaGi4g1v0374500.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein phosphatase; TAIR: AT2G42500.1 protein phosphatase 2A-3; Swiss-Prot: sp|Q07100|PP2A4_ARATH Serine/threonine-protein phosphatase PP2A-4 catalytic subunit; TrEMBL-Plants: tr|W9REL2|W9REL2_9ROSA Serine/threonine-protein phosphatase; Found in the gene: LotjaGi4g1v0374500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75377983..75381086) extracted from Lotus japonicus Gifu genome v1.2.
GAATACTTATTTCTGGTTACAACTTTTTGTCGGCAGTGTCCAGATACAAATTACTTGTTTATGGGAGATTATGTTGACCG TGGCTATTATTCTGTCGAAACCGTAACGGTAAATATGAACTGCATACTTTTCCTTTTCTTAGTATTTCAAACTCTTGGTG GGTTTATTTCATTAGGGTGTTTCAGTAAAACCTCATTTGGTCTTAGAAGAGACCATGCTACATTTGTATATTTTGCATCA GTAGTTTGATATCTGCTTTAGAAGAGTTTAAAATTACTTAGTTCATTAGTTCAATTACAGTTGTGTTCAGCCTTGAAAAA TTCTGTTTTCCAGATTGTCATTCTAAAATTTCTTATGGCATACCTGTGCAGTGAGGATGATGGATTATCATTTGTTCGTG CAATAGGCCTTGTTTGTGGCAATTGTTGCATTTATTTGTGTTCACTATATAATTGAAGTATTTGTTGTTGTGCCCAACCT GCTATCCAGAAAGTAAAGCGAGTATATGATGTTGCCGCATATGTAATAATGCATTATATCTATAGAACATGTGGGGTTAT GATTTTGTGGTACAAGCTTATGACTTTTATTTTATTAATTGCATGTTTGGATTGTGTTTATTTTGCTTTGAAGTGATATT TCTTTTGTAAGTAACATTTTTGGCACTAATTAAGTTATAATAATGCAGCTTTTGGTTGCCCTTAAAGTGCGTTATCGGCA GCGCATCACTATTCTAAGGGGGAATCATGAAAGCCGACAGGTTTGTTCTAGTTTTTATCATGTGACATTTCTGACAGTTG GGAATTGAATGAGATGAAAATCTTATTTTGGTCCTCGGAGAATAGTCGGTATCAATTTAGTTCTGGAGAAACTTTTTCTC AGTTACTGCCTGAAAGTCTTTATTGCTACCAATTGAATGCTTTCACCCTTCAGAAGGAAATAATGTACCATTGAGTACAC AATTGGTGCCTGCTCTATCTGAGGACCAAAATTTGCTTTTCTTAAAGAATGGTACCAGGGGATTTGATTAAGTAATTGTA ATGTTCAGAGCTTTATACTTCTAAATGACTATGTTAGACTGAAATGCAGAGTACAACTTGACTTGCTTGTTTGTTTAGTT GCTCTTGTATGGATTATTTTTGAATAGTAATGGCTGATCTTAACTTTCTGCTGCAGATTACTCAAGTTTATGGGTTTTAT GATGAGTGCCTAAGGAAGTAAGTACCTGTTAAATCCATTTTTTAAATGACATCTTTGTACAGTAACTTTGATATTGGCTA TCATTGTCTTCAGTTTGACACAATCTTTTCCTTTATCCCTACTATCATTAATGTGTATTCTTCTCTTTTTGTTATATTTT TCGGATTTAATTTAATGGGTTTTTTGGTGATGAAAATGATAAATAGTTCTCTCATTCTCTGGTTGGCGGCTTTTTTGTAG AGATAATTTTTTTTTTGTTTTTGCAATCCTGTATCAGTGAATATATGAACTTGTGCAATCCTGTATCAGTGAATATTTTC ATATTTTGATTTGCAGATATGGCAATGCTAATGTTTGGAAGATCTTCACTGATTTATTCGACTACTTTCCGTTGACAGCA TTGGTTAGTATCCTTTACATAATTTTGTAAAGCACTGCAAGATATTCTGTTTTTGCCTCTGATTGGATTTATTAGTATGT TGGTTAGGTTGTTATGATTCTTAGCTCCACGTTGTACATATTGATCCTAGGAGTCTTAAATTTGTAGGCTTATTTTGAGT TATATCTAGTTACCTGCTGTATCTCTTATTTCCTTTCTGAAAAAAATATGCTCATGGTGCTAGCTCTTATTATCTTGCTC TATAAACTTATTGATATGTTGCCAACTTGATTGCAGCTCACATAGTTCACTGAGGTTTCCACGTTTTTTATAGGAATAAG TCCTAATTAAGAAGTTCTATGAGAGGTGTAGGAGAGCTCTACAGGAGCGTAACCCATAGGAGTCATTTTCATTGCACAAC TAACTAACCAACATATAGGCCGATAGAAAAGCTAACCAACATAGAGTGAGTTAGTAGTTACAAATGAAGATATTTAGTTG GAGTAATATAAAAGTAGGGGATACTGGATAGTAGTGCTTATGAGGGTATGCAGCAGATTGTAATTCAGAATTAGTAGAGA GTTGAGTAAATTCTTAGCAACCTTTTATATCTCTTAGCTCTATTTCGGTATTTCCTGAAGTAGTCCACATTGGGCAGGTT GGGGAATTAGGGTTCTGCATCAATAATACATTAAATTTCTTCAATACTTCCACTTTCTGGGTACTGAAATCCTATCAGTT TTCAATAATTTAATGTTACTGAAGTGATGTATTCTCTTTTGAAGGTCGAATCTGAAATATTTTGTCTTCATGGTGGGCTG TCCCCATCTATTGAAACCCTTGATAACATTCGTAATTTTGATCGTGTACAAGAAGTTCCTCATGAGGGGCCCATGTGTGA TCTTCTCTGGTCTGATCCGGATGATCGCTGTGGCTGGGGTATCTCTCCTAGGGGTGCTGGGTATACCTTTGGCCAGGTAA TCTAGTTTGTTGTGCATCAAGCTTGTACGTTTCTTGTAATCTTTGTCAATTGCTTATGCATGTTACTTTTATAGGACATA TCTGAGCAATTTAACCATACCAATAACTTGAAGCTGATTGCTAGAGCTCACCAGCTGGTTATGGAAGGATATAACTGGGG TCATGTAAGTATTTGATCTCATATTGTTTGTTTTATTTTCATACATGAGTACATAGCTAATTCATAGGGTCTTCTTGCAG GATCAAAAGGTGGTAACCATATTTAGTGCACCTAATTATTGCTATCGCTGTGGGAACATGGCATCCATCCTTGAAGTTGA TGACTGCAAAGGACATACTTTCATTCAGGTTGAGCTTCCTATTTCGTTACCTAATTAACTACTAGGCAATATAATGGATC CATAACTAAAATGTTTTTAGTCTTGCTTTACGTCTTTGGTACATGAAGTTAGTTGTCTTAATTATTTTTTAATCACAGTT TGAGCCAGCTCCGAGGAGGGGAGAGCCTGATGTAACTAGAAGAACACCTGATTATTTCCTATGA
CDS sequence (LotjaGi4g1v0374500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATTATGTTGACCGTGGCTATTATTCTGTCGAAACCGTAACGCTTTTGGTTGCCCTTAAAGTGCGTTATCGGCA GCGCATCACTATTCTAAGGGGGAATCATGAAAGCCGACAGATTACTCAAGTTTATGGGTTTTATGATGAGTGCCTAAGGA AATATGGCAATGCTAATGTTTGGAAGATCTTCACTGATTTATTCGACTACTTTCCGTTGACAGCATTGGTCGAATCTGAA ATATTTTGTCTTCATGGTGGGCTGTCCCCATCTATTGAAACCCTTGATAACATTCGTAATTTTGATCGTGTACAAGAAGT TCCTCATGAGGGGCCCATGTGTGATCTTCTCTGGTCTGATCCGGATGATCGCTGTGGCTGGGGTATCTCTCCTAGGGGTG CTGGGTATACCTTTGGCCAGGACATATCTGAGCAATTTAACCATACCAATAACTTGAAGCTGATTGCTAGAGCTCACCAG CTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTAACCATATTTAGTGCACCTAATTATTGCTATCGCTG TGGGAACATGGCATCCATCCTTGAAGTTGATGACTGCAAAGGACATACTTTCATTCAGTTTGAGCCAGCTCCGAGGAGGG GAGAGCCTGATGTAACTAGAAGAACACCTGATTATTTCCTATGA
Protein sequence (LotjaGi4g1v0374500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDYVDRGYYSVETVTLLVALKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVESE IFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQ LVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 212 | 212 | 8.23E-89 | – | |
| Gene3D | 1 | 227 | 227 | 4.2E-99 | ||
| SMART | 1 | 211 | 211 | 9.3E-97 | ||
| PANTHER | 1 | 227 | 227 | 1.6E-168 | – | |
| PANTHER | 1 | 227 | 227 | 1.6E-168 | – | |
| Pfam | 2 | 160 | 159 | 1.9E-26 | ||
| PRINTS | 31 | 55 | 25 | 2.2E-59 | ||
| ProSitePatterns | 32 | 37 | 6 | - | ||
| PRINTS | 66 | 92 | 27 | 2.2E-59 | ||
| PRINTS | 95 | 122 | 28 | 2.2E-59 | ||
| PRINTS | 151 | 171 | 21 | 2.2E-59 | ||
| PRINTS | 173 | 189 | 17 | 2.2E-59 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0374500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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