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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0376200 |
| Transcript ID | LotjaGi4g1v0376200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 29; TAIR: AT3G47810.1 Calcineurin-like metallo-phosphoesterase superfamily protein; Swiss-Prot: sp|Q9STT2|VPS29_ARATH Vacuolar protein sorting-associated protein 29; TrEMBL-Plants: tr|I3SDN8|I3SDN8_LOTJA Vacuolar protein sorting-associated protein 29; Found in the gene: LotjaGi4g1v0376200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75494464..75496947) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTCTGGTCTTGGCACTAGGGGATTTGCACATACCCCACAGGGCACCTGATCTTCCTGCAAAGTTCAAATCCATGCT TGTCCCTGGCAAGATCCAGCACATCATTTGTACTGGAAATTTATGTATCAAAGTATGTTTATCTTTCGAAATTAGTATTT ATGATTCTGATTGTCTGTTCCCATGCTAGGTTAGAATAGAATTGCCTCAACTTTCTATTTTTCAAATTCTATATTATGAG ATGACAAGGGACAGGGGTATAAAGCTCATTTTTTTTGTGACCAGTCGTTTACCGCTTAATGCAAGCACCTGCGACAAAGA GATTAGTCACTACTGTCGGCGGTCGATACCCTGGGCTCACCGAAAAAAACATTAACAACCATTAACCAAAGCCTTTTCCC TGTTGGATACATGGATCAGATGATACCATTATAACCTTGTATGAATCATATGTCGTTTGCTGCAAAGAAGGAATTATTTT TCGCTTAAAATCTTGTAGTTGTAGGATTTGAGCTCGTTAGGAATGTTTAACTCATACAGTCTGAGCGTGAACTTCAACAT ATAGTTGTAGGACACATCCAATTTCGTTCTTTCCCATTATCTATGTTGTGTTCAATGTCTTTGTCATTGTCTGACCTTAC TTCGGTAGAAAGTAGATGAAAGATGGACAACTAGTAAAGTTGGGTACTTGTAGGCTGCTGTATGGAAGGCTTGCGGCTAG TGGCGAAGCCATTTGGGGCCTGGTAGTATGCTTCTTGATTTTTGTATAACATTCATTGTCCACCATTTCCGCAGGGCAAG CCAAGTCTCTTTTCTTTTTGACCACCTCTCTTAAGAATTAAGTTCAATGATACTGTATTATTTATGACCACAAAAGGGTT GAATAATGATTATATGTTCTATAAATCTGCCTTTGGTAGCATGTGTACTGTCATATTACTATGGCAGTATGGCACTACTT TTGTTCATGTGTTATTATCCCCCTTTGCATTGCATCAATTATCCATTTGCATCCACCAAAATAATTTAGTACATTTGTTA TGGTTCTATATTCTTTATATGGTATTTTTTTATTCGTATATGGAAATAGATGAGCTTTTAATGATAAAATTTGTAAGTTA ACTTTTACGTCATTTATGTTCAGGAAGTCCATGACTACTTAAGGACTCTTTGCCCAGACTTGCATATAACTCGTGGTGAG TATGATGAAGAGACAAAATATCCGGAGACTAAGACACTAACCATTGGCCAATTTAAGCTGGGACTATGCCATGGTCATCA GGTCTGATATTTTTTTTTTTGACTCAGATATTATTTTCCCCATTTCACTTCTAGATATTAACAGTTTAAGATTTTCTCGG TAGTGATAGGGGGCTGCACTTTGGGTTTCTTGATCAAAAATATATGATTTTAGGCAACTGTAAGAAGTTTGTGGATTGGG GTAGTAATATGAAGAGCATGTTTACTTTTCGTATCGAAAGCGCCTAAACGGATTAGCATGAGTAGTGTGTCATTGGGTGC AACAGACTTTCAACCTCTGGCAACAAGTAAACAGTCACGTTAGAAATAATTTCTGTTGCGTAGATTACCTTGCTGCTTCA ATCTGAGATGAATGATTTTGTTCTTTAGGTTGCACTTGTATAGGTTCAATTGCTTTCTCATCTTCTGTTTCTTTATATTT TTACTAACAGATGCAGTTTACATCTGATAGAAAACCTTGGGCTGAATGACCTAGAGGGATTTGGTCGCAATCAGTTATTA GGGCTGAGCCCGAGTAAGTCATCCATGTGGAAGGTATATAAGTATATTCCAGAAAGTGGGCTAAGCATTGAGGAGGTGTT TTTGTCTTTTATGGGGATCTGCTGACATGGCCAAGTTAGTTAGGCCAGCAACATTTTAGGGATGGTGGGGATAGGTGTGA TGGTCTTGAAGGAAGTTTTCTAATTGTTGATTGAGAGAGTCTCCAGAGGAGCTCATGCTCTGGTAATCATAACAGTGATA ATAATAGTTGGAGCACTATCAACATCTGTTTTATTTTATTTTGTTCTAGCTGCAACTTTTTCCAGTCGGTCAGTGGTTGA ATTTTTTTAGGAATCTGTTATTGGTTCTGTGTAGAAGAGACTGAAAATGTGCCTACTATGTATTGTGATATGATGCTTAT GAGTTCTTAATGATTGTGAAGGTTATTCCATGGGGTGACCTCGACTCACTGGCAATGCTACAGAGGCAACTTGGTGTAGA TATCCTTATCACAGGTCACACCCATCAGTTTACAGCATACAAACACGAGGGTGGCGTGGTTATAAATCCAGGCTCTGCAA CAGGTGCCTACAGCAGCATGACTTATGATGTCAACCCAAGTTTTGTTCTTATGGACATTGATGCCCTCCGTGTCGTAGTT TATGTATATGAACTTATTGATGGCGAGGTTAAGGTTGACAAGATTGATTTCAAGAAAACATCTACAAGCTAGTCTGCGCA TTGA
CDS sequence (LotjaGi4g1v0376200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTGGTCTTGGCACTAGGGGATTTGCACATACCCCACAGGGCACCTGATCTTCCTGCAAAGTTCAAATCCATGCT TGTCCCTGGCAAGATCCAGCACATCATTTGTACTGGAAATTTATGTATCAAAGAAGTCCATGACTACTTAAGGACTCTTT GCCCAGACTTGCATATAACTCGTGGTGAGTATGATGAAGAGACAAAATATCCGGAGACTAAGACACTAACCATTGGCCAA TTTAAGCTGGGACTATGCCATGGTCATCAGGTTATTCCATGGGGTGACCTCGACTCACTGGCAATGCTACAGAGGCAACT TGGTGTAGATATCCTTATCACAGGTCACACCCATCAGTTTACAGCATACAAACACGAGGGTGGCGTGGTTATAAATCCAG GCTCTGCAACAGGTGCCTACAGCAGCATGACTTATGATGTCAACCCAAGTTTTGTTCTTATGGACATTGATGCCCTCCGT GTCGTAGTTTATGTATATGAACTTATTGATGGCGAGGTTAAGGTTGACAAGATTGATTTCAAGAAAACATCTACAAGCTA G
Protein sequence (LotjaGi4g1v0376200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLVLALGDLHIPHRAPDLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQ FKLGLCHGHQVIPWGDLDSLAMLQRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDIDALR VVVYVYELIDGEVKVDKIDFKKTSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 181 | 181 | 2.25E-46 | – | |
| PANTHER | 1 | 185 | 185 | 1.1E-118 | – | |
| PANTHER | 1 | 185 | 185 | 1.1E-118 | ||
| Gene3D | 1 | 182 | 182 | 2.6E-76 | ||
| TIGRFAM | 3 | 158 | 156 | 3.2E-30 | ||
| CDD | 3 | 180 | 178 | 3.66006E-123 | ||
| Pfam | 4 | 157 | 154 | 1.1E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Retromer complex | A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35. | ||
| Biological process | Retrograde transport, endosome to Golgi | The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. |
Expression pattern of LotjaGi4g1v0376200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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