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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0379000 |
| Transcript ID | LotjaGi4g1v0379000.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|I1KSF7|I1KSF7_SOYBN Cellulose synthase; Found in the gene: LotjaGi4g1v0379000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75832268..75836887) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAGAGAAGCTGTAGAATAGATCATATGCCCCTTGTGCACATGTAAAGTGGTAAATTGAGGTGAGGTAGGGATATACC TATTTGGTTTGATGCATGAAATTAGACAGAAAATAAAAACATTATTTTTGAGAATTCTTGCATTTTCCGATCTTGTCCGA TAGTCATAGGCTAAAATCTGTTCAAATTCAGTCATAGATTTATTCTACAATTCACTTGGTGATATGTTTTGCAGGCCCAC AGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCCATTATCGAAAAGCAAAGTGGCACCCTACAGAACTGTGATCATCA TGCGACTAATAATCTTGGCTCTTTTCATTCATTATCGAGTTACAAATCCTGTTGATAGCGCTTTTGGTCTTTGGTTGACA TCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTTAGATCAGTTCCCTAAATGGTTTCCTGTTGACAGACAAAC TTTTATTGAGAACCTTTCTGCAAGGTAAGTGCACAAAGTTGCTACAACATTTGGATGTCTTGTACTTTGTGCTCTAAGGG TGATTTAAAATCAAAAATCATATTGTAGAATTGGTATGTTTCTGCTTCTTTCTCTGTTGGGAATGGTGAAAGGTAATCTA TGAAAATTGAAATAATAGATAGTAAATAAGAGCTTAATTTTGATCTTCTATCAATTTAAAAAAAATACTTACACTATGAA ACAATTATATGTTACACACATCATTGCAGCAATTATGATGACAGTTACCTAAGAAGTCTAAGTGTCAAATACTTTTTACT TTGAATCAAAATAAATCTATATAGTAATGTTTAAATTAAATGTGAGAGCACAATGAGAGAGTGCTTTAGATGCTGATACT CACTTCTATAATGCCTTGCCAGGTTTGAAAGAGAGGGTGAACCCTCTGGACTTGCTTCAGTTGATTTCTTTGTCAGTACA GTGGATCCTATGAAAGAACCACCACTGATCACAGCGAATACAGTGCTTTCTATCCTTGCCGTTGACTACCCGGTTGAAAA AGTATCTTGTTATGTGTCAGACGATGGTGCTGCAATGCTCACATTTGAGTCTCTTGTGGAGACAGCTGAATTTGCAAAGA AGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAACCAAGAGCACCTGAGTATTACTTCTCACAAAAGATTGACTACCTC AAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGCAGAGCGATGAAGGTAAGCATAAAAGTTAAAACACCTTTGACATA TAAATATATCTGATCTTCTATATTTACCACCTTGTTTTCCCAAATTGATAATCTTAGAGCTACCTCTTCATGATTACTTA TAAATTCTGATACAGAGAGACTATGAAGAGTATAAGGTAAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGA AGATGGATGGACTATGCCAGATGGAACACCTTGGCCGGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGTATTCC CATCATTTCTGTATGTAATCTATTCTCAATGATGATATAGGTAGGCTTAAATTTTTTACACAAAGTGCTTTGAGTTGTTC TGTGTGATCTCTTTTCAAATGGAAATTTGTAATGTTCATAAGATTGATGATTTCTATTAATTATTGACCCAGATGCTAGT TATATTTCCTAGTACTTGTCATAGGCTCCTCACTCTTAAAAAAGTGTTAATTTTCAAGAAAATATTATTTTCCATCTCCA GGCTTTCCTTGGACACACCGGTGCACGTGACATAGAAGGAAATGAACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAA GACCAGGATACCAGCACCACAAGAAAGCTGGTGCTGAAAATGCACTGGTATGTGTAGTTACCATAACAATATTTCCTTTA AGATCATTAAGATTTATAGTGCTTGATGTTTTAGATGGATCTATGCAGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCC CTTCATTCTCAATCTTGATTGTGATCATTACGTTAACAACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATC CAGAAGTTGGTAGAGACGTGTGTTATGTACAATTCCCTCAAAGATTTGACGGTATTGATCGTAGTGATCGATATGCCAAT CGCAATACAGTTTTCTTTGATGTAAGTTTATGACAAAGCAGAGATTTACCATATTGTCAATATAAAGTTTCATTTTCTTA TGTGGTAAAAAATGTATCTCGTCAAGCAAATATTTGCAAAGATACTCTACCTAGTCAAAAACAAAAAACAAATTATTTTC TTGTTTTGTGATCAAGAGTCCAATTCCTTCATCTTTTTGTGTCCATGTTGTCTCATTGTTAACAATAGTAATATAATGAT TTAAGTATATTGATCAAACATTTTCCTGCATGCAATGCAGTAACTTCTGGATACAACTGTGCAGTTTCCAATCGTCATGC CAATTTAACGGTCTATTTATGATATTCATTCAGGTTAACATGAAAGGACTTGATGGCATTCAAGGACCAGTATATGTGGG GACTGGATGTGTTTTCAATAGACATGCACTTTATGGCTATAGCCCACCTTCTATGCACAACTTACCGGGATCTTCATCGT GCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAGATGTCTCGCTGGCTTACAGAGATGCAAAGAGGGATGAACTTAAC GCTGCCACTTATAATCTCAGTGAGATTGACAGTAAGTATAATTTATTTATTTTTCAATCTGTGAAAGAGAAGCATATAAC AAAGTCTTTTTTGTATAATATTTTTCTGGTTTATTTTCTTCTTGCAGATTATGATGAACATGAGAGGTCAATGCTGATTT CACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAACTGTTCTAATTGAATCTACACTAATGGAGAAGGGAGGGGTTCCT GAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCTGTTCATGTAATTAGCTGTGGATATGAAGAGAAGACTGAATGGGG AAAAGAGGTTTGGCTTGAATGTTAATGTTCTTTTACAAAGTCCATCATCAGATTCTTGCTTTCCTTCTCTTTTACAGTGA TATTTCTGTTTGCGTGCTTATTCCACTTGAAATTTGACTCAAGCAAGACTTACTAGTTATTACACTTAACATGTAAGAAA TGTCTTATCACAAAAAGTAAGGTCGGCTATATCGATCACTTGATACATGTTAAGGATACAGTTGTTTTACATCGGCTGCT GCAGGTCTAACACAACCTTCCTCATTTATCCGGGCATAGGACTGGCTATGACACAGCATAGGCAGAATTTCAAGCAAGAC TTATTATGTTTAACTTTTTCTTTTGCTTAGTCTATAGCATTATTGACTAATTAAAACATCTTTTTTTTTTCAGATGGGCT GGATTTATGGTTCAGTCACTGAGGATATCTTAACTGGGTTCAAGATGCACTCTCGAGGATGGAGATCAATTTACTGCATG CCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATCAACTTGTCCGATCGGTTGCACCAAGTCCTTCGATGGGCGCTTGG ATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCTCTGGTATGGAGTTGCTGGAGGCCATCTCAAATGTCTGCAGAGAA TGGCTTATATAAACACCATAGTCTATCCTTTCACATCTCTTCCTCTGATTGCTTATTGTACATTGCCAGCCATTTGCCTT CTCACAGGAAAATTTATTATACCAGTGGTAATTTCCTCACCTTTATTATTGTTCCACTCATAGAAGCTTCTCCGCATAAT TGATTCTGGCTTCAAAATCCATTATAGGATAGCTTCCAAACATGCACTTGGATTATGATTATCCTCCAATTGTTCAACGA AATATAAATTATTTGTAATCACACAACCAAATTAAACTAGTTATAGAAACAGATCAGTATAACAGTTTATAGTGATGCCT TTGATGATGTTATTGTTTACAATTTAATACAGCTTTCCAACCTTGCAAGTGTTCTCTTCCTTGGACTTTTCCTCTCCATT ATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGTGTTAGCATCGAGGATTTGTGGCGTAACGAGCAGTTCTGGGTGAT TGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCAAGGATTGCTCAAGATGTTGGCTGGTGTTGATACTAACTTCACCG TCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTGATCTTTACATTGTGAAGTGGACAACTCTCTTGATTCCTCCAACA ACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACTGAATGGAGGATATGAGTCATGGGGACC ACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAA ACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGTTGCTGGCCTCTGTCTTCTCAATGATTTGGGTCAAGATAGATCCA TTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAGGCATGTGTTGCTATAGATTGTTAA
CDS sequence (LotjaGi4g1v0379000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCTTGTGCCCACAGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCCATTATCGAAAAGCAAAGTGGCACCCTA CAGAACTGTGATCATCATGCGACTAATAATCTTGGCTCTTTTCATTCATTATCGAGTTACAAATCCTGTTGATAGCGCTT TTGGTCTTTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTTAGATCAGTTCCCTAAATGGTTT CCTGTTGACAGACAAACTTTTATTGAGAACCTTTCTGCAAGGTTTGAAAGAGAGGGTGAACCCTCTGGACTTGCTTCAGT TGATTTCTTTGTCAGTACAGTGGATCCTATGAAAGAACCACCACTGATCACAGCGAATACAGTGCTTTCTATCCTTGCCG TTGACTACCCGGTTGAAAAAGTATCTTGTTATGTGTCAGACGATGGTGCTGCAATGCTCACATTTGAGTCTCTTGTGGAG ACAGCTGAATTTGCAAAGAAGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAACCAAGAGCACCTGAGTATTACTTCTC ACAAAAGATTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGCAGAGCGATGAAGAGAGACTATGAAG AGTATAAGGTAAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGAAGATGGATGGACTATGCCAGATGGAACA CCTTGGCCGGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGCTTTCCTTGGACACACCGGTGCACGTGACATAGA AGGAAATGAACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAAGACCAGGATACCAGCACCACAAGAAAGCTGGTGCTG AAAATGCACTGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCCCTTCATTCTCAATCTTGATTGTGATCATTACGTTAAC AACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCAGAAGTTGGTAGAGACGTGTGTTATGTACAATTCCC TCAAAGATTTGACGGTATTGATCGTAGTGATCGATATGCCAATCGCAATACAGTTTTCTTTGATGTTAACATGAAAGGAC TTGATGGCATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACATGCACTTTATGGCTATAGCCCACCT TCTATGCACAACTTACCGGGATCTTCATCGTGCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAGATGTCTCGCTGGC TTACAGAGATGCAAAGAGGGATGAACTTAACGCTGCCACTTATAATCTCAGTGAGATTGACAATTATGATGAACATGAGA GGTCAATGCTGATTTCACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAACTGTTCTAATTGAATCTACACTAATGGAG AAGGGAGGGGTTCCTGAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCTGTTCATGTAATTAGCTGTGGATATGAAGA GAAGACTGAATGGGGAAAAGAGATGGGCTGGATTTATGGTTCAGTCACTGAGGATATCTTAACTGGGTTCAAGATGCACT CTCGAGGATGGAGATCAATTTACTGCATGCCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATCAACTTGTCCGATCGG TTGCACCAAGTCCTTCGATGGGCGCTTGGATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCTCTGGTATGGAGTTGC TGGAGGCCATCTCAAATGTCTGCAGAGAATGGCTTATATAAACACCATAGTCTATCCTTTCACATCTCTTCCTCTGATTG CTTATTGTACATTGCCAGCCATTTGCCTTCTCACAGGAAAATTTATTATACCAGTGCTTTCCAACCTTGCAAGTGTTCTC TTCCTTGGACTTTTCCTCTCCATTATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGTGTTAGCATCGAGGATTTGTG GCGTAACGAGCAGTTCTGGGTGATTGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCAAGGATTGCTCAAGATGTTGG CTGGTGTTGATACTAACTTCACCGTCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTGATCTTTACATTGTGAAGTGG ACAACTCTCTTGATTCCTCCAACAACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACTGAA TGGAGGATATGAGTCATGGGGACCACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCC TCAAGGGTCTCATGGGTCGCCAAAACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGTTGCTGGCCTCTGTCTTCTCA ATGATTTGGGTCAAGATAGATCCATTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAGGCATGTGTTGCTATAGATTG TTAA
Protein sequence (LotjaGi4g1v0379000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLVPTEAASLPLSVLIPLSKSKVAPYRTVIIMRLIILALFIHYRVTNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWF PVDRQTFIENLSARFEREGEPSGLASVDFFVSTVDPMKEPPLITANTVLSILAVDYPVEKVSCYVSDDGAAMLTFESLVE TAEFAKKWVPFCKKFSIEPRAPEYYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVSKAQKAPEDGWTMPDGT PWPGNNSRDHPGMIQAFLGHTGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVN NSKAVREAMCFLMDPEVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRHALYGYSPP SMHNLPGSSSCCCGGRSKKSTEDVSLAYRDAKRDELNAATYNLSEIDNYDEHERSMLISQMSLEKTFGLSTVLIESTLME KGGVPESADPAMLIKEAVHVISCGYEEKTEWGKEMGWIYGSVTEDILTGFKMHSRGWRSIYCMPLRPAFKGSAPINLSDR LHQVLRWALGSIEIFLSRHCPLWYGVAGGHLKCLQRMAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPVLSNLASVL FLGLFLSIIMTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKMLAGVDTNFTVTAKAAEDGEFGDLYIVKW TTLLIPPTTLIVVNMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVILWSVLLASVFS MIWVKIDPFVNKVDSETIAEACVAIDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 8 | 826 | 819 | 0.0 | – | |
| PANTHER | 8 | 826 | 819 | 0.0 | – | |
| TMHMM | 24 | 46 | 23 | - | – | |
| Phobius | 25 | 42 | 18 | - | – | |
| Phobius | 43 | 53 | 11 | - | – | |
| TMHMM | 53 | 72 | 20 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| Phobius | 74 | 602 | 529 | - | – | |
| Pfam | 107 | 817 | 711 | 0.0 | ||
| SUPERFAMILY | 120 | 619 | 500 | 1.05E-8 | ||
| Gene3D | 258 | 435 | 178 | 2.1E-13 | ||
| TMHMM | 603 | 625 | 23 | - | – | |
| Phobius | 603 | 625 | 23 | - | – | |
| Phobius | 626 | 631 | 6 | - | – | |
| Phobius | 632 | 652 | 21 | - | – | |
| TMHMM | 632 | 654 | 23 | - | – | |
| Phobius | 653 | 671 | 19 | - | – | |
| Phobius | 672 | 694 | 23 | - | – | |
| TMHMM | 674 | 696 | 23 | - | – | |
| Phobius | 695 | 714 | 20 | - | – | |
| Phobius | 715 | 736 | 22 | - | – | |
| TMHMM | 720 | 742 | 23 | - | – | |
| Phobius | 737 | 755 | 19 | - | – | |
| TMHMM | 752 | 774 | 23 | - | – | |
| Phobius | 756 | 774 | 19 | - | – | |
| Phobius | 775 | 785 | 11 | - | – | |
| Phobius | 786 | 806 | 21 | - | – | |
| TMHMM | 787 | 804 | 18 | - | – | |
| Phobius | 807 | 827 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi4g1v0379000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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