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LotjaGi4g1v0379000.5

Overview

Field Value
Gene ID LotjaGi4g1v0379000
Transcript ID LotjaGi4g1v0379000.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description Cellulose synthase; TAIR: AT4G18780.1 cellulose synthase family protein; Swiss-Prot: sp|Q8LPK5|CESA8_ARATH Cellulose synthase A catalytic subunit 8 [UDP]-forming]; TrEMBL-Plants: tr|A0A151R8T4|A0A151R8T4_CAJCA Cellulose synthase; Found in the gene: LotjaGi4g1v0379000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:75832268..75838291) extracted from Lotus japonicus Gifu genome v1.2.

ATGATGCAATCTGGTGTTCCCCTCTGCAACATTTGTGGGGAACAATTGAAGCATGATGATAATGAGGAGGTGTTTGTGGC TTGTCATGAGTGTAATTTCCCAATTTGCAAGGCTTGTTTTGAGCATGAAATCAGTGAGGGCCATAGGGTCTGCTTGAGAT GTAGTACTCCCTATGGAGGTAATCCTTTAATAGTTTAATGTGAACATTATATTTCCAATGAAAAAAAATACGATATGTGC CTTTATACCATGTAGATTTGTTACTCATTTTGTACTCCATGACATGGTTATTTGATGCTAGCTGATGATGCGTGGAGGGT AATTAAACTCTTACATTAATTTAAAGAATCACCAACAAAGTAATAAACTATTAGTTTCAATAGTGAGAAGAAGAGGCAAA GAAAAATCTATAGCACACTTTAATCTATATATTCATTCTCTCAAAGAATTGTTCTTTGTTTCCCCCCTTTTACCTGAATT CTCTATTCATTCACTTCAGTAAAATCATTTCAAATAGGGACTGCTTTACTTTTTCCACAAATGACTTATATTGTGAAGGA TCCTAAGGGGAAATGTTTCCTTTTGTATGTGTAACAGAGAGAGCAAAGGATGATGGAGACGACGATGGCATAAAAGTTCT AGAAGATCAATCCACAATGGCTTCCCAGTCCAATGACCCTAATCAGCCTCAGGTAATGAATCACTAGGAATTATTAGATA TGGAAGTACTAAACATTGGAAATTCAGCTAAGTTCAAAAGTTTACATTGGTAAAAAAATGAGCTAAATAAAGATAATATA AAACAACCAACTTATTTCTAATAATTGAGGTTTGGGGTAAAGGTAGGTGTTGTATTCACTTCATAATTTTGGACTCTCCC TCTCCCAAATCAGAAATCCCTAAATTTTGGGAAAAACAGTTCTGAAGAAATCTTAAGTTATTATTTGTAGTATTTTGGAA TATTGTTAATATGTTCTTATCTGAACTTACAAACACACCTCGAATTTTGTAGGATGTTGGACTCCACGCTAGACATGTCA GTTCAGTGTCCACAGTTGATGATAGTGGTAAATAAGAGACTTAAGACCACTTCTTCTTGAAAATTTCTTTAGAAGCAGTC TTTGATAATCACAACACGGTTTTTCTTGTAGATGTAAATGATAAAACTGGGAATTCAACATGGAAAAGTCGACTACAAAG CTGGAAGGGAAAGGAGAAAAAGAACAAGAAGAAAAAGGCTGCACCTAAGGCTGAAAATGAGTCCTCAGCTCCACCAGAGC AGCAGATGGAAGGAATACAGTGAGTTGAATCAGAAATGAAATGAATTTCCTGAAATGGATAACAAAATTTGTATCAAAAT AGCATTTAATTAAATGTTAACAAACATTTCTCACCTTAACTAACATTAAGAGAAGCTGTAGAATAGATCATATGCCCCTT GTGCACATGTAAAGTGGTAAATTGAGGTGAGGTAGGGATATACCTATTTGGTTTGATGCATGAAATTAGACAGAAAATAA AAACATTATTTTTGAGAATTCTTGCATTTTCCGATCTTGTCCGATAGTCATAGGCTAAAATCTGTTCAAATTCAGTCATA GATTTATTCTACAATTCACTTGGTGATATGTTTTGCAGGCCCACAGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCC ATTATCGAAAAGCAAAGTGGCACCCTACAGAACTGTGATCATCATGCGACTAATAATCTTGGCTCTTTTCATTCATTATC GAGTTACAAATCCTGTTGATAGCGCTTTTGGTCTTTGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGG GTGTTAGATCAGTTCCCTAAATGGTTTCCTGTTGACAGACAAACTTTTATTGAGAACCTTTCTGCAAGGTAAGTGCACAA AGTTGCTACAACATTTGGATGTCTTGTACTTTGTGCTCTAAGGGTGATTTAAAATCAAAAATCATATTGTAGAATTGGTA TGTTTCTGCTTCTTTCTCTGTTGGGAATGGTGAAAGGTAATCTATGAAAATTGAAATAATAGATAGTAAATAAGAGCTTA ATTTTGATCTTCTATCAATTTAAAAAAAATACTTACACTATGAAACAATTATATGTTACACACATCATTGCAGCAATTAT GATGACAGTTACCTAAGAAGTCTAAGTGTCAAATACTTTTTACTTTGAATCAAAATAAATCTATATAGTAATGTTTAAAT TAAATGTGAGAGCACAATGAGAGAGTGCTTTAGATGCTGATACTCACTTCTATAATGCCTTGCCAGGTTTGAAAGAGAGG GTGAACCCTCTGGACTTGCTTCAGTTGATTTCTTTGTCAGTACAGTGGATCCTATGAAAGAACCACCACTGATCACAGCG AATACAGTGCTTTCTATCCTTGCCGTTGACTACCCGGTTGAAAAAGTATCTTGTTATGTGTCAGACGATGGTGCTGCAAT GCTCACATTTGAGTCTCTTGTGGAGACAGCTGAATTTGCAAAGAAGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAAC CAAGAGCACCTGAGTATTACTTCTCACAAAAGATTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGC AGAGCGATGAAGGTAAGCATAAAAGTTAAAACACCTTTGACATATAAATATATCTGATCTTCTATATTTACCACCTTGTT TTCCCAAATTGATAATCTTAGAGCTACCTCTTCATGATTACTTATAAATTCTGATACAGAGAGACTATGAAGAGTATAAG GTAAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGAAGATGGATGGACTATGCCAGATGGAACACCTTGGCC GGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGTATTCCCATCATTTCTGTATGTAATCTATTCTCAATGATGAT ATAGGTAGGCTTAAATTTTTTACACAAAGTGCTTTGAGTTGTTCTGTGTGATCTCTTTTCAAATGGAAATTTGTAATGTT CATAAGATTGATGATTTCTATTAATTATTGACCCAGATGCTAGTTATATTTCCTAGTACTTGTCATAGGCTCCTCACTCT TAAAAAAGTGTTAATTTTCAAGAAAATATTATTTTCCATCTCCAGGCTTTCCTTGGACACACCGGTGCACGTGACATAGA AGGAAATGAACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAAGACCAGGATACCAGCACCACAAGAAAGCTGGTGCTG AAAATGCACTGGTATGTGTAGTTACCATAACAATATTTCCTTTAAGATCATTAAGATTTATAGTGCTTGATGTTTTAGAT GGATCTATGCAGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCCCTTCATTCTCAATCTTGATTGTGATCATTACGTTAA CAACAGCAAGGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCAGAAGTTGGTAGAGACGTGTGTTATGTACAATTCC CTCAAAGATTTGACGGTATTGATCGTAGTGATCGATATGCCAATCGCAATACAGTTTTCTTTGATGTAAGTTTATGACAA AGCAGAGATTTACCATATTGTCAATATAAAGTTTCATTTTCTTATGTGGTAAAAAATGTATCTCGTCAAGCAAATATTTG CAAAGATACTCTACCTAGTCAAAAACAAAAAACAAATTATTTTCTTGTTTTGTGATCAAGAGTCCAATTCCTTCATCTTT TTGTGTCCATGTTGTCTCATTGTTAACAATAGTAATATAATGATTTAAGTATATTGATCAAACATTTTCCTGCATGCAAT GCAGTAACTTCTGGATACAACTGTGCAGTTTCCAATCGTCATGCCAATTTAACGGTCTATTTATGATATTCATTCAGGTT AACATGAAAGGACTTGATGGCATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACATGCACTTTATGG CTATAGCCCACCTTCTATGCACAACTTACCGGGATCTTCATCGTGCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAG ATGTCTCGCTGGCTTACAGAGATGCAAAGAGGGATGAACTTAACGCTGCCACTTATAATCTCAGTGAGATTGACAGTAAG TATAATTTATTTATTTTTCAATCTGTGAAAGAGAAGCATATAACAAAGTCTTTTTTGTATAATATTTTTCTGGTTTATTT TCTTCTTGCAGATTATGATGAACATGAGAGGTCAATGCTGATTTCACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAA CTGTTCTAATTGAATCTACACTAATGGAGAAGGGAGGGGTTCCTGAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCT GTTCATGTAATTAGCTGTGGATATGAAGAGAAGACTGAATGGGGAAAAGAGGTTTGGCTTGAATGTTAATGTTCTTTTAC AAAGTCCATCATCAGATTCTTGCTTTCCTTCTCTTTTACAGTGATATTTCTGTTTGCGTGCTTATTCCACTTGAAATTTG ACTCAAGCAAGACTTACTAGTTATTACACTTAACATGTAAGAAATGTCTTATCACAAAAAGTAAGGTCGGCTATATCGAT CACTTGATACATGTTAAGGATACAGTTGTTTTACATCGGCTGCTGCAGGTCTAACACAACCTTCCTCATTTATCCGGGCA TAGGACTGGCTATGACACAGCATAGGCAGAATTTCAAGCAAGACTTATTATGTTTAACTTTTTCTTTTGCTTAGTCTATA GCATTATTGACTAATTAAAACATCTTTTTTTTTTCAGATGGGCTGGATTTATGGTTCAGTCACTGAGGATATCTTAACTG GGTTCAAGATGCACTCTCGAGGATGGAGATCAATTTACTGCATGCCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATC AACTTGTCCGATCGGTTGCACCAAGTCCTTCGATGGGCGCTTGGATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCT CTGGTATGGAGTTGCTGGAGGCCATCTCAAATGTCTGCAGAGAATGGCTTATATAAACACCATAGTCTATCCTTTCACAT CTCTTCCTCTGATTGCTTATTGTACATTGCCAGCCATTTGCCTTCTCACAGGAAAATTTATTATACCAGTGGTAATTTCC TCACCTTTATTATTGTTCCACTCATAGAAGCTTCTCCGCATAATTGATTCTGGCTTCAAAATCCATTATAGGATAGCTTC CAAACATGCACTTGGATTATGATTATCCTCCAATTGTTCAACGAAATATAAATTATTTGTAATCACACAACCAAATTAAA CTAGTTATAGAAACAGATCAGTATAACAGTTTATAGTGATGCCTTTGATGATGTTATTGTTTACAATTTAATACAGCTTT CCAACCTTGCAAGTGTTCTCTTCCTTGGACTTTTCCTCTCCATTATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGT GTTAGCATCGAGGATTTGTGGCGTAACGAGCAGTTCTGGGTGATTGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCA AGGATTGCTCAAGATGTTGGCTGGTGTTGATACTAACTTCACCGTCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTG ATCTTTACATTGTGAAGTGGACAACTCTCTTGATTCCTCCAACAACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCT GGATTCTCTGATGCACTGAATGGAGGATATGAGTCATGGGGACCACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGAT TTTTCATCTCTATCCATTCCTCAAGGGTCTCATGGGTCGCCAAAACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGT TGCTGGCCTCTGTCTTCTCAATGATTTGGGTCAAGATAGATCCATTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAG GCATGTGTTGCTATAGATTGTTAA 

CDS sequence (LotjaGi4g1v0379000.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTTCCTTTTGTATGTGTAACAGAGAGAGCAAAGGATGATGGAGACGACGATGGCATAAAAGTTCTAGAAGATCAATC CACAATGGCTTCCCAGTCCAATGACCCTAATCAGCCTCAGGATGTTGGACTCCACGCTAGACATGTCAGTTCAGTGTCCA CAGTTGATGATAGTGATGTAAATGATAAAACTGGGAATTCAACATGGAAAAGTCGACTACAAAGCTGGAAGGGAAAGGAG AAAAAGAACAAGAAGAAAAAGGCTGCACCTAAGGCTGAAAATGAGTCCTCAGCTCCACCAGAGCAGCAGATGGAAGGAAT ACAGCCCACAGAAGCTGCTTCTCTACCACTTTCAGTACTTATTCCATTATCGAAAAGCAAAGTGGCACCCTACAGAACTG TGATCATCATGCGACTAATAATCTTGGCTCTTTTCATTCATTATCGAGTTACAAATCCTGTTGATAGCGCTTTTGGTCTT TGGTTGACATCTATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTTAGATCAGTTCCCTAAATGGTTTCCTGTTGA CAGACAAACTTTTATTGAGAACCTTTCTGCAAGGTTTGAAAGAGAGGGTGAACCCTCTGGACTTGCTTCAGTTGATTTCT TTGTCAGTACAGTGGATCCTATGAAAGAACCACCACTGATCACAGCGAATACAGTGCTTTCTATCCTTGCCGTTGACTAC CCGGTTGAAAAAGTATCTTGTTATGTGTCAGACGATGGTGCTGCAATGCTCACATTTGAGTCTCTTGTGGAGACAGCTGA ATTTGCAAAGAAGTGGGTGCCATTCTGCAAAAAGTTTTCAATTGAACCAAGAGCACCTGAGTATTACTTCTCACAAAAGA TTGACTACCTCAAGGACAAAGTGCAACCTTCTTTTGTGAAGGAACGCAGAGCGATGAAGAGAGACTATGAAGAGTATAAG GTAAGAGTTAATGCTTTGGTATCTAAGGCTCAGAAAGCACCAGAAGATGGATGGACTATGCCAGATGGAACACCTTGGCC GGGAAATAATTCACGCGATCACCCTGGCATGATTCAGGCTTTCCTTGGACACACCGGTGCACGTGACATAGAAGGAAATG AACTTCCCAGGTTGGTTTACGTTTCCAGAGAGAAAAGACCAGGATACCAGCACCACAAGAAAGCTGGTGCTGAAAATGCA CTGGTAAGGGTGTCTGCAGTTCTCACAAACGCTCCCTTCATTCTCAATCTTGATTGTGATCATTACGTTAACAACAGCAA GGCCGTTCGGGAAGCAATGTGTTTTCTCATGGATCCAGAAGTTGGTAGAGACGTGTGTTATGTACAATTCCCTCAAAGAT TTGACGGTATTGATCGTAGTGATCGATATGCCAATCGCAATACAGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGC ATTCAAGGACCAGTATATGTGGGGACTGGATGTGTTTTCAATAGACATGCACTTTATGGCTATAGCCCACCTTCTATGCA CAACTTACCGGGATCTTCATCGTGCTGTTGTGGTGGCCGCTCAAAGAAGTCCACTGAAGATGTCTCGCTGGCTTACAGAG ATGCAAAGAGGGATGAACTTAACGCTGCCACTTATAATCTCAGTGAGATTGACAATTATGATGAACATGAGAGGTCAATG CTGATTTCACAGATGAGCTTGGAAAAAACTTTTGGCTTGTCAACTGTTCTAATTGAATCTACACTAATGGAGAAGGGAGG GGTTCCTGAATCAGCAGATCCTGCAATGCTGATCAAGGAGGCTGTTCATGTAATTAGCTGTGGATATGAAGAGAAGACTG AATGGGGAAAAGAGATGGGCTGGATTTATGGTTCAGTCACTGAGGATATCTTAACTGGGTTCAAGATGCACTCTCGAGGA TGGAGATCAATTTACTGCATGCCTTTGAGGCCTGCATTCAAAGGATCAGCACCTATCAACTTGTCCGATCGGTTGCACCA AGTCCTTCGATGGGCGCTTGGATCAATTGAAATTTTCCTAAGCAGACATTGTCCCCTCTGGTATGGAGTTGCTGGAGGCC ATCTCAAATGTCTGCAGAGAATGGCTTATATAAACACCATAGTCTATCCTTTCACATCTCTTCCTCTGATTGCTTATTGT ACATTGCCAGCCATTTGCCTTCTCACAGGAAAATTTATTATACCAGTGCTTTCCAACCTTGCAAGTGTTCTCTTCCTTGG ACTTTTCCTCTCCATTATAATGACTAGTGTGCTTGAGCTTCGCTGGAGCGGTGTTAGCATCGAGGATTTGTGGCGTAACG AGCAGTTCTGGGTGATTGGAGGTGTCTCAGCACATTTGTTTGCAGTCTTCCAAGGATTGCTCAAGATGTTGGCTGGTGTT GATACTAACTTCACCGTCACGGCCAAGGCCGCTGAGGACGGCGAGTTTGGTGATCTTTACATTGTGAAGTGGACAACTCT CTTGATTCCTCCAACAACCCTCATCGTTGTTAACATGGTTGGTGTTGTTGCTGGATTCTCTGATGCACTGAATGGAGGAT ATGAGTCATGGGGACCACTCTTTGGGAAGGTGTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAGGGT CTCATGGGTCGCCAAAACAGAACTCCCACCATTGTTATTCTCTGGTCAGTGTTGCTGGCCTCTGTCTTCTCAATGATTTG GGTCAAGATAGATCCATTTGTGAACAAAGTTGACAGTGAAACCATTGCTGAGGCATGTGTTGCTATAGATTGTTAA 

Protein sequence (LotjaGi4g1v0379000.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFPFVCVTERAKDDGDDDGIKVLEDQSTMASQSNDPNQPQDVGLHARHVSSVSTVDDSDVNDKTGNSTWKSRLQSWKGKE KKNKKKKAAPKAENESSAPPEQQMEGIQPTEAASLPLSVLIPLSKSKVAPYRTVIIMRLIILALFIHYRVTNPVDSAFGL WLTSIICEIWFAFSWVLDQFPKWFPVDRQTFIENLSARFEREGEPSGLASVDFFVSTVDPMKEPPLITANTVLSILAVDY PVEKVSCYVSDDGAAMLTFESLVETAEFAKKWVPFCKKFSIEPRAPEYYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYK VRVNALVSKAQKAPEDGWTMPDGTPWPGNNSRDHPGMIQAFLGHTGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENA LVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPEVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDG IQGPVYVGTGCVFNRHALYGYSPPSMHNLPGSSSCCCGGRSKKSTEDVSLAYRDAKRDELNAATYNLSEIDNYDEHERSM LISQMSLEKTFGLSTVLIESTLMEKGGVPESADPAMLIKEAVHVISCGYEEKTEWGKEMGWIYGSVTEDILTGFKMHSRG WRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSIEIFLSRHCPLWYGVAGGHLKCLQRMAYINTIVYPFTSLPLIAYC TLPAICLLTGKFIIPVLSNLASVLFLGLFLSIIMTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKMLAGV DTNFTVTAKAAEDGEFGDLYIVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKG LMGRQNRTPTIVILWSVLLASVFSMIWVKIDPFVNKVDSETIAEACVAIDC 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 128 128 -
MobiDBLite 7 107 101 -
MobiDBLite 9 23 15 -
MobiDBLite 25 40 16 -
PANTHER 42 930 889 0.0
PANTHER 42 930 889 0.0
MobiDBLite 51 73 23 -
TMHMM 128 150 23 -
Phobius 129 146 18 -
Phobius 147 157 11 -
TMHMM 157 176 20 -
Phobius 158 177 20 -
Phobius 178 706 529 -
Pfam 211 921 711 0.0
SUPERFAMILY 224 723 500 1.2E-8
Gene3D 362 539 178 2.5E-13
Phobius 707 729 23 -
TMHMM 707 729 23 -
Phobius 730 735 6 -
Phobius 736 756 21 -
TMHMM 736 758 23 -
Phobius 757 775 19 -
Phobius 776 798 23 -
TMHMM 778 800 23 -
Phobius 799 818 20 -
Phobius 819 840 22 -
TMHMM 824 846 23 -
Phobius 841 859 19 -
TMHMM 856 878 23 -
Phobius 860 878 19 -
Phobius 879 889 11 -
Phobius 890 910 21 -
TMHMM 891 908 18 -
Phobius 911 931 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Cellulose synthase (UDP-forming) activity Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1).
Biological process Cellulose biosynthetic process The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0379000.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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