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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0380500 |
| Transcript ID | LotjaGi4g1v0380500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER lumen protein-retaining receptor; TAIR: AT1G29330.1 ER lumen protein retaining receptor family protein; Swiss-Prot: sp|P35402|ERD2A_ARATH ER lumen protein-retaining receptor A; TrEMBL-Plants: tr|I1KSH4|I1KSH4_SOYBN ER lumen protein-retaining receptor; Found in the gene: LotjaGi4g1v0380500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75967083..75971144) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACATCTTCAGACTCGCCGGTGACATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAA ATCATGCTCAGGTCACTCCTCCACAAACCCAAACTCATCGATCAATTTCATTTTCGTATTTTCCCCTTAATTTGCGAGTT TCACTGATTCACTCACATTCATAATTAGTCATGGTTTTGTGAATTTCGCATTGAATTTTTTAAATTGGGGGTTGATTTTG CTTTTTTTTTTGGGGTTTCAGGGGTTTCACGCAAGACGCAAGAGCTCTATGCAGTGGTGTTTCTGGCACGTTACTTGGAT CTGTTCACGGATTTCATCTCCATTTACAACACCATCATGAAGCTTGTCTTCATTGCCAGTTCGTTGGCCATTGTCTGGTG CATGCGGTATCATCCCATGGTTAGGAGGAGTTATGACAAGGAACTCGATACTTTTCGCCATTATTTCCTCGTTGCGGCTT GCTTTGCTTTGGCGATTATATTGAATGAGAAGTTCACCTTTCAAGAGGTTAACAGCTTTTGCATACCCTTAACTTGATGT TATTACTTTTATGATGTATTTAGTTTTCTAAGCATTGCTATAGGTTTTCTTTTTGGTCATGAATTGAATGTGTTTGAGTA GTGGTGGTGATTATATTGTTTTTCATTTGTTGTTTGTATTTCTGATTTTTTAATAGTTGTTCATTTCTCCTAATGTTTGA TTTCTTATTTTCTCATTTATTTTTAAGAAAATCATTAGAAGATGTGTCGTGTCTTGTGTGCAGTTGTGTGTGGCATGTTT AGTTTTCATTTGAAATTTAAAAAAAAAAAATTGATTTGTATGTTGACAAATTATATGTGCCTTTGATTTGAATGTGGACA TTACAGTATGAAAATGGCTTACAGAATGATGGTTCATCGGTCACTATATTCTCTATGATTGAATGATTTTTACCATTTGG GCCTATTTCTAGTGGCAGCCGCAGCTTGCATGTTCCAGTGCTTACTGTTAAATTATAATGTTGCTAAACTCCTTTGAAAT CATTTCTATATGCGTCATTTTTAGAATCTCTAAACTTCCTGGAAAAATTGATATTCAGTTTAGGTTTTGATTTTAGTCCT TCACTTCCATTGTTTGCCACACTTCTCTGAACAGTAGCGAAATCTTTTTACCCTTTAAGTATTCTTTTCTTTATTTGTTT GAAATGTTACTGTTAGGTATAGTAGTCAATAGCGGGAAATAGCGGCGCTATAGCGGCGTAGCGGAGCGGAGCGGCTCCCT GCCGCTATTGAGATGAAATAGCGGCCAACTTCACAATAGCGGTCGTAGCAGCGCGAATAGCGGCCAAAATAGCGGCAGAT CGCGGCCAATAGCGGGAAATATATGAACTCAATAGCGGCCAACTTCACAATAGCGGTCGTAGCGGCGCGAATAGCGGCCA AAATAGCGGCAGATCGCGGCCAATAGCGGGAAATAGCGGGCGCTATATGAACGCAGGAGAAAATGACTCAAGCCCCTTGG TTTTAAATCGTTGGGGAACCTTTTTATGGGCATGTTAGGACTTCTCAGGGCCATTATAGGTCAAAATTGAAAGAATTAAG CTTCATTCTTCATTCAGATTTGCAAATTCGACTTCTTTACCTTGCTTTTGAGAAGTTATTAGTTGTATGTTATTGTTCAA GACTTATGATTTTTATTTCTATTATGAATGTTATGAATTTTAGACAATATTTGACATTGTTTGCTATTTATATGTATATA GTATTAAACTATTAATGATATAAAATTACATAAAAAAATTCAGAATAGCGGCCATCCCGCTATGCGCTATCACGCTATCC CACTTTTGGGGCCGGCCGCTACGCGCCGCTATCCGGGATTGACTACTAGGCTGTTAGGAAAACAAGAGGTCAAGGAAAAG AAAACTTTGAGATCAGTGGGAATCTCCATGAGATTGATCAGTGGTTACTGTTTAGTTGAATTTTAATTTTGTTATCACTG CTTGCTTAGTCAATGAATGAGTAACTTCCAAGTAATATTTATAAGGTCCATACAATGTGATATAGTTTCATAATCTGATG AACAATGTTTGCTGTGTATTTTTGTTATTGCTGTTGTAAATTAAAATATTTTTCTTGACGATTTTTTCTATAGATTCTTT GACGGGATCCATACCGTGTTACCTTTTGTACCATGAATCTGAGGAATGCTGTTTTTATTTAGTTTATGTCGTGCTTTTCA TATTACTCATGTCATGTTGAGCCTTGAAAAGGCACCTCATTACCCAATATATTTTGAAGTCTCAACTTATCACAAGTACA TGTTGACTGTTGTCATTTAACCCTAGAAACTGAGGCCTTTTTGCTGTTTTATAATATTAGTTTGTCTAGTTGAAACTACC AACAGCAATTCAGCACTTTTTCACACTTCTGCCTTACTGGAATGAAAATGATGAACCTTTTTGGTTCTTATTTAAAGTAA AAGGTAAGAAGGTGAAATTCATTATATTATAGGCTGATGATCATAGATATTTTATCAAGTAGCTATCACTTCAGCTAGAA ATCCACCTAATACTGAAATCTTTTTATTTGATTGCTTCTCTTCCAGATTGGCTAAATAATTTAATGAAGTTCCAAGTTTG ATTTAGATTCTTATAAAGAAGTATAAAAACTAAAAAATGGCCAAGCTTCATCCAATTTTTTAGGCTAATCTGATGCTATA AAGCTCTCGCCATGGTGCAATTTCGGAAAGTGTCGGACCCATCTGGGTTTATTGTAGCTTCCTGCATTTTCAAGAGACTG ATTCCATGACTCAAATTTGTGACCTAATCACACTACAGTTACTCCAATTGTTGCAGCTAGGCTTCCCTTCAATTTGTACT TTTAGGCTAACAGTAGTTTGAAAGATACTTTGTTGGTAGTTTGAAGATTTCAAAGTTGACACATAATCTTATGGTTTTGG CTCTGGTACATGGTTTGTGGAGAAAGGCTAAAGGCCATAAAATGATAAGGTAGGTCACTCAAAGTGAGGGATCAAATAAA ATTTCTGGCAATATATATTTTAGGGAATCTGCTGCATGTAACTGGTCCCCCCTCCTCCGTTTAGGTAAGTCCCCCCTCCT CCGTTTAGGTAAGTGTTGCAAAAGTGAAAGCAAACCTGTCACTTGGTGTCAAATGTTCTTCCTGTCCAAGAATATTCACC TGTCCCTGTCCGTATTGATTGCCAATCTGGATTCTTGTGTGCATTACATGTTAGCTTTGTAGTAATTCTGTTAACATTTT AATGTCAAGTATAATGATATACATGTTAGCTTTATGTACCTATTGCAGGTCTTCTGGGCATTTTCAATTTACTTGGAGGC AGTTGCTATACTGCCCCAGTTGGTTTTGTTGCAACGTAGTGGAAATGTGGACAATTTGACTGGGCAATATGTATTCTTTC TTGGGTATGTGCACTTCTGTTGTTGATTTTCTTTTTCTTTTAAGATCTATCTTTCTGTTTTGATTGTTCATAATTACGAT CAACCTTCATAACTTTTAATCCTGTTTAGTGGGCTAAATTGGCACTTTCCTGCTTCTGTTTTCCCCATCTTGTCTCCAGT TTTGATGCTTACACAATTGAGCAGTTAGCTGTAGAACTTGTGCAGATTTGTCAATTTGAACTTATCTCAGAATCTGTTTA TTGTTATGATGATAAAAAGGAATGTACTGATTATTCTTAAACTGCAGTGCATATCGTGCATTTTACATTCTGAACTGGAT ATACCGCTATCTGACTGAGCCACGTTTTACTCGATGGATAGGTAATAAATACTGAAATACAAACTACTTTTGAAACTATA CGTCTACGATTCTGATTGCTTTTCTTGTCTTTACAGCCTGCGTCTCAGGTGTTGGTCAGACGGCCTTGTATGCAGATTTC TTCTACTATTATTTCATCAGGTAAACGATAGTTTTCTGTCAAGTTTATCATGTTTTGTACCATACATCAATAGCAAATAG TAATATCAGGAACTTTGTTTTGCAGCTGGAAGAACAATTCAAAACTAAAGTTACCTGCTTGA
CDS sequence (LotjaGi4g1v0380500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACATCTTCAGACTCGCCGGTGACATGACCCATCTTCTCAGCATTCTCGTCCTCCTCCTCAAAATCTACGCCACCAA ATCATGCTCAGGGGTTTCACGCAAGACGCAAGAGCTCTATGCAGTGGTGTTTCTGGCACGTTACTTGGATCTGTTCACGG ATTTCATCTCCATTTACAACACCATCATGAAGCTTGTCTTCATTGCCAGTTCGTTGGCCATTGTCTGGTGCATGCGGTAT CATCCCATGGTTAGGAGGAGTTATGACAAGGAACTCGATACTTTTCGCCATTATTTCCTCGTTGCGGCTTGCTTTGCTTT GGCGATTATATTGAATGAGAAGTTCACCTTTCAAGAGGTCTTCTGGGCATTTTCAATTTACTTGGAGGCAGTTGCTATAC TGCCCCAGTTGGTTTTGTTGCAACGTAGTGGAAATGTGGACAATTTGACTGGGCAATATGTATTCTTTCTTGGTGCATAT CGTGCATTTTACATTCTGAACTGGATATACCGCTATCTGACTGAGCCACGTTTTACTCGATGGATAGCCTGCGTCTCAGG TGTTGGTCAGACGGCCTTGTATGCAGATTTCTTCTACTATTATTTCATCAGCTGGAAGAACAATTCAAAACTAAAGTTAC CTGCTTGA
Protein sequence (LotjaGi4g1v0380500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNIFRLAGDMTHLLSILVLLLKIYATKSCSGVSRKTQELYAVVFLARYLDLFTDFISIYNTIMKLVFIASSLAIVWCMRY HPMVRRSYDKELDTFRHYFLVAACFALAIILNEKFTFQEVFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVFFLGAY RAFYILNWIYRYLTEPRFTRWIACVSGVGQTALYADFFYYYFISWKNNSKLKLPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 215 | 215 | 1.6E-128 | ||
| PANTHER | 1 | 215 | 215 | 1.6E-128 | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PRINTS | 4 | 23 | 20 | 2.4E-62 | ||
| Phobius | 13 | 21 | 9 | - | – | |
| Phobius | 22 | 25 | 4 | - | – | |
| Phobius | 26 | 55 | 30 | - | – | |
| Pfam | 28 | 171 | 144 | 2.6E-53 | ||
| PRINTS | 31 | 51 | 21 | 2.4E-62 | ||
| ProSitePatterns | 31 | 48 | 18 | - | ||
| PRINTS | 52 | 68 | 17 | 2.4E-62 | ||
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 56 | 77 | 22 | - | – | |
| Phobius | 78 | 97 | 20 | - | – | |
| TMHMM | 92 | 111 | 20 | - | – | |
| Phobius | 98 | 115 | 18 | - | – | |
| Phobius | 116 | 120 | 5 | - | – | |
| TMHMM | 120 | 139 | 20 | - | – | |
| Phobius | 121 | 141 | 21 | - | – | |
| PRINTS | 122 | 142 | 21 | 2.4E-62 | ||
| ProSitePatterns | 128 | 137 | 10 | - | ||
| Phobius | 142 | 152 | 11 | - | – | |
| PRINTS | 144 | 158 | 15 | 2.4E-62 | ||
| TMHMM | 149 | 168 | 20 | - | – | |
| Phobius | 153 | 173 | 21 | - | – | |
| PRINTS | 158 | 176 | 19 | 2.4E-62 | ||
| Phobius | 174 | 178 | 5 | - | – | |
| Phobius | 179 | 202 | 24 | - | – | |
| TMHMM | 181 | 203 | 23 | - | – | |
| PRINTS | 187 | 202 | 16 | 2.4E-62 | ||
| Phobius | 203 | 215 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein retention in ER lumen | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ER retention sequence binding | Interacting selectively and non-covalently with an endoplasmic reticulum (ER) retention sequence, a specific peptide sequence that ensures a protein is retained within the ER. |
Expression pattern of LotjaGi4g1v0380500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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