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LotjaGi4g1v0381000.1

Overview

Field Value
Gene ID LotjaGi4g1v0381000
Transcript ID LotjaGi4g1v0381000.1
Lotus japonicus genome version Gifu v1.2
Description Heat shock transcription factor; TAIR: AT4G18880.1 heat shock transcription factor A4A; Swiss-Prot: sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a; TrEMBL-Plants: tr|R9R6C4|R9R6C4_9FABA Heat stress transcription factor A-4a-like protein; Found in the gene: LotjaGi4g1v0381000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:75995795..76001066) extracted from Lotus japonicus Gifu genome v1.2.

CAACACTTTTTCTCCAAAATCAACCATGCGTTGACCTTCCTTTCATCAAAATCGTTACAGAGAAGGTGGAAAATTCTCTA ACGCGCTTCAACGAAGAAGAAGAAGAAACGATCCCAATAATTCGAACCTCCCAGAAACCCAAAACCCCCTTCCATTTCCA CTCTGCAAATTCTCTGCAACTTCTCTCACTTTCTCTGTCATCCTTTTTCAGGTGCAAAACCCCCAACAACTACTAAACCG CCATTGATTTTCTCTTTGGAGTTCAATTTAATTTTCCAGTTATTGTTGTTGCTTTACGTTCAAGTTTCCCCTTAAAAGGG AAGCAAAAATACCACCTTTGTTTTGGTGGGAAAATGCAACCCATGATGCTTCTGAGATTTGTCTGACCTTTTTCTTGGGA AATTTGTGAAGAAAATCAGTTTTTCTTATCTGGGTATTTTAGTTTTAGGTTAACTGAGGAGAAAGCTGAAAACTTTATCT GCTTTGTGATTTTGGTGATTTTCTGGGTCATGCTTTAAATTTAGGGTCGTGGATTGTTGTTCTTGTTGAATAGGTGTATA GGGTTTTGGAATTGTTGGCAATTGTAATATTTTGGTGCAGGTGGGTGTTTTTTTGGGGGATTTTGTTTTTTTGGGGTTTC CTAGTATCCATAAGGTGATTGAGGGTTTGGCTTGTTTGGAAAGTTTGGGAATTGATTGATTTTTGAGTATTGAATTTGGT AGGGTGAGATTTGTGAGTAGGGGTTGGGGTTTTGACTGATGGATGAAGCACAGAACAGTTCAAGTTCCCTGCCTCCTTTC CTGGCAAAGACATATGAGATGGTGGATGATCCTTCTTCGGATCGGATTGTTTCCTGGAGTGCGACTAATAGAAGTTTCGT TGTATGGAATCCCCCAGATTTTGCAAGGGAATTGCTCCCTAGATTCTTCAAGCACAATAACTTCTCAAGTTTTATCCGGC AGCTGAACACATATGTGAGTGGATTTTATCTTGGTGTTGTTGATGTGAATGCTTGTTTTGTATGTATTTATCCATTATGC TTTTGGTTGTTTGAGCTGAATCATAGTGTTTGGTTTGAGCAGGGATTTCGGAAAGTTGACCCTGAACAATGGGAATTTGC CAATGATGGTTTTGTGCGAGGGGAACCACATCTTATGAAGAATATTCACAGACGGAAGCCGGTTCACAGCCATTCTATGC AGAATCTCCAAGCACATGCACCACTAGGGGAGTCAGAAAGGAAGAGTTTAAATGATGAAATAGAGAAGCTTAAACACAAT AAAGAACGACTCCTTATGGAGTTACAAAGACATCAGCACGAGTGGCAACCGTATGAGATACAACTAAATTGCTTAAAAGA ACAGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCACAAGCCTGTGATTGCTC TAAATCTATTGCCACCGACAGAAACCATGGATAGAAAGCGGAGGTTACCAGGAGGTGGCTACTTTAATGATGAAGCTAGC ATTGAAGATGCTGTTGATACTTCCCAAATGTTACCCAGAGAAAATGCAGAGGGGGCCTCTGTTTTGACATTAAACATGGA GCGATTGGATCAGCTTGAGTCATCCATGTTATTTTGGGAAACTATTGCACATGAAACTGGTGATACCTTCATTCACATTC ATACAAACATGGATGTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTCCGCAACTAGAAGTTGAAGTT CGGTCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCTTGAGCCCGTTGCATCGAAAGAACA ACCTGCAGGAAAAGCTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCCGGTGCATCAG AAGCACAGGAAGTGCAGTCAGAAAGAAAGGAATATAATGGCAGGAAAAGTGAAGGAAAACCTACTGACCACGGAAGATTT TGGTGGAATGCGCGAAATGCAAATAATCTTCCAGAACAGGTGGGGCATGTTAGTCAAGCAGAGAAAACTTAATGACAATT GGTAATTCCTTCTTGATTGTGGTGCCTCACAATCACATGTAATAAATTTAGGTATGCCCGGTTTTCTATTCATTATATAC ATATTCAATATTTCGGGTGAAATGAATATTTGCATCTAGTTGATCTTAGTTAATTATGCAACACTTTTGTCTCTTTTAGT GCCATTATGCCAAAACCTGCCTGTACTGAATTGTGGTATGGTTCGAAGGTTTTAAATTGTGGACCACACCATGTGGCTGC AATATATTATCGCAACCGCAACCGCAGGATGTGGTCTGCGGTTCCTTCCTGATGTTACTTTATCATATTACAGAGTGCAC CAGCTGGTATTCTTTTCGCTGTCATCATTTTTGTGAATGAAAATCATTCCACAATAGCAGGGTGATTCTGATGCAATTGC AATAGTGTAGCTGTTGCATCAAGTGATGCAGTATGGAATTTCAAACCAGGAACACAAATAGTATTTTAGCCAATGCCTGG CTGATCTATTTTGCAAATAAGAATGGAAAAGACTGTTGTTTTCATGAATACACATTTGCGACAGGCAATTAAGAACTTAA GATTTTATTTTCTTCAATAAAAAAATATGTGAGGGTTTTACAAGTAGTCAATTCCACTACATTATTCTACTAGACAAAAA CCAGATTAACTGTGAGGCTGACCACAGAGGAGTGCAATTTGTATGGGAAGAAATTCAAGATAGAATGGTAAAGTTAAGCT GATTAGTGTCCTTCATCAAACTGATGAAGTGAAAAATAACTTGGATTGTACCTTGGATTGGGCTGAATCACCATGATATA GAATTAACTTCTTGTATATAATACGTTTCATTTTACTCGGGTTTTCTAGCTCATGTTGAAAGACTTGTAATGATTACTAA ATTGTAATTTTCAAACTTAGGTAGAGACTGCTGAAAGAAACATGTTTGTATGTAGTGGAAGTCAAATTTCAATTGGCAGA AGTAGTGCATGCCAAGCAAATTGATTATATGCATAATGTCTTTGATATACTGAGGAATATGGCAGATTTGTGTATTTGCA TATAGTTGCATTCAGGACTGCAGATCATATAGCAAGAATGGTTTAAAGTTATTTTTTCCTGGGTAATTTTATTTAAATGT ATTTTCTTATTTGATTTGTGCTGCTGATTGATAAGTATAGTATATTACTCAGTTGGTTCAATAATTTCATAGTGAAAAAA AAAGAACAAGTAGAAGAAGAAGAAAGGAGGTGCAGGAAGAGGTATGACTGTAGAATAACAACGAACCAAGCCTTTTCCCA CTAGGGTTGGGTTGGCTACATGTATCAACCATGTCATAATGCCTTGTCATTATTTACTCCAAAAATAGGCCATTTATCTC TAATGGCCTGTATTTTTTCTTGTTCTCCCTCTACTTTGAACAATTGAACTAATGGATTATTCTTCATTTAGTCAACCCTC CTTACCATTGTTTATACAGTTTTCTCTATACACGCTTGAACCACCTAAAGACAAGACTATCATTTCTTTTACATTGAGAG CCAGAGCCACCTCATTTGTCTCTCTAATGGTTATATTTGTAATGGTATCTTGTCTTCTGCATTACTCTTATCAACCTATC TGACTGTTAATCTCAGGAAAGGCCGTCTTTCTGGCAGTTATTCTACTAGGTGAGTGTTATGTATAACCCAAGTTCTAGTT ATATTACACTAATTAATAAAAACAACCCGGCAAGTAATTATGTCAGTCAATCTACTTCCATTGTAGTTATTTGGAGCTCA TCCTATATGGTATATATTATCGATTAGAAAAATTTATTGACAGTATTCTTGAATGAAACATTCTTCATCAAGTGTATGAG TTTATGGCTTTCTTCTACTTTCTCTTGTAACTGAGCAATGGGCACGTTATGTTATGTGTCATACCATTTTGGAAGTTTAT TGCGATTTGCGAGTATCATGTCTATGTGCTGAACCAACAAATTTAAAGTTGATGTATGCTGCATTGAACTTTGGTGCTAT GCCAGGTGTTAGTAAGCAAGTTTGTTAACTGATCCTATCTTGGCAAAGGTCTTCTTCTGGCTTCTCAGAAGAAAAAAAGG GTAGTTTGGCTTCTTAGTTATTAACCAGAAAACCTATCACAAATCAACCAAGATAAAAAATGCTCTGACTTTAATAGGAT CTTGCTTCAATGCAATGTCTGGTGGACTGTTAAAATGTTATGTTGCAGGTCACAGGGTTTGATTCTCATTGCAATGTTTG TGTACTGTTGAATGCTTTCATTTGTACCACTGGCTGCTGCATTTAGCTTGTCATCCTTATTTTAACTTCAAGTTTAGTTT GTAGAAATGGGGAGACAGTCCTTGGTAAATGTAAAATTAAAATCATGGTTTGCATTAAACCTTCTGAATTTAAGTTGCTG AATTTGATTTAAAACCATATAGTTCAGGAGTTTATTTTTATGCCCTCTGTTTAGAAACACTGTTATTCAATGATGTATTT GTCACATTATTTAAGGAGTTTGATCATTCATGTATTATTAGATTCATTAAATGATGTCTCAACTCTCAACGATGATAGTG CAGATCTTTTTGTTTTCTTTTTAACTTTGATATTGCATACAAATTAAGTTCATTGTTTATGTTGCTGTTTGATTAATACT ATGTAACTCTTCACCTGATTTGACTGGTTAATTTTCTAATTCGATTATTATTTCTGAGAGCTCTTGTTTGAGGTGAGCAT TGAATTTAGTTTCTGCCCTCTTGATTGCCATGATCATTTAGTTTTATGCTGTCTTGTTTAGAGTTGTGGGATTTTGCTTG ATTGTATAATTACTAGTTTCAGTGGCATTGGTTCCATGTTGCCCTGGAATTTTATAGGGTGTGTGGACAAGAAGATATTT TTATTGTTATTTAGCATTTTACGTTTTGTTTTTATATAATGTTACATTTCAAATTTTATAAAAATTACAGACTGGTTAGT TGTCCTAAAAATCAGGGGTATTTGTATTGCAGATATAGATTAAGAATATGTTTTTGGTCAAGGACTAAGAACAAACACAT TTAAATTAAGGGTCAACTTGGTACCACCCCTTTGGATGGGAGCCTATATGGACCAGGTTGGCCTATATGCTCACCCACAC GTAAGGTATTGAAAAGATGGTTTGATTATGAGTATACTTTTTGAACAAAAAAAGAGTTAATTAGTGTTCTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGAAGCACAGAACAGTTCAAGTTCCCTGCCTCCTTTCCTGGCAAAGACATATGAGATGGTGGATGATCCTTCTTC GGATCGGATTGTTTCCTGGAGTGCGACTAATAGAAGTTTCGTTGTATGGAATCCCCCAGATTTTGCAAGGGAATTGCTCC CTAGATTCTTCAAGCACAATAACTTCTCAAGTTTTATCCGGCAGCTGAACACATATGGATTTCGGAAAGTTGACCCTGAA CAATGGGAATTTGCCAATGATGGTTTTGTGCGAGGGGAACCACATCTTATGAAGAATATTCACAGACGGAAGCCGGTTCA CAGCCATTCTATGCAGAATCTCCAAGCACATGCACCACTAGGGGAGTCAGAAAGGAAGAGTTTAAATGATGAAATAGAGA AGCTTAAACACAATAAAGAACGACTCCTTATGGAGTTACAAAGACATCAGCACGAGTGGCAACCGTATGAGATACAACTA AATTGCTTAAAAGAACAGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCACAA GCCTGTGATTGCTCTAAATCTATTGCCACCGACAGAAACCATGGATAGAAAGCGGAGGTTACCAGGAGGTGGCTACTTTA ATGATGAAGCTAGCATTGAAGATGCTGTTGATACTTCCCAAATGTTACCCAGAGAAAATGCAGAGGGGGCCTCTGTTTTG ACATTAAACATGGAGCGATTGGATCAGCTTGAGTCATCCATGTTATTTTGGGAAACTATTGCACATGAAACTGGTGATAC CTTCATTCACATTCATACAAACATGGATGTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTCCGCAAC TAGAAGTTGAAGTTCGGTCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCTTGAGCCCGTT GCATCGAAAGAACAACCTGCAGGAAAAGCTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGA TCCCGGTGCATCAGAAGCACAGGAAGTGCAGTCAGAAAGAAAGGAATATAATGGCAGGAAAAGTGAAGGAAAACCTACTG ACCACGGAAGATTTTGGTGGAATGCGCGAAATGCAAATAATCTTCCAGAACAGGTGGGGCATGTTAGTCAAGCAGAGAAA ACTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0381000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDEAQNSSSSLPPFLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSSFIRQLNTYGFRKVDPE QWEFANDGFVRGEPHLMKNIHRRKPVHSHSMQNLQAHAPLGESERKSLNDEIEKLKHNKERLLMELQRHQHEWQPYEIQL NCLKEQLEKLEQKQQKMVSSVSQVLHKPVIALNLLPPTETMDRKRRLPGGGYFNDEASIEDAVDTSQMLPRENAEGASVL TLNMERLDQLESSMLFWETIAHETGDTFIHIHTNMDVDESTSCADSLSISCPQLEVEVRSKSSGIDMNSEPTAAAVLEPV ASKEQPAGKAAATGVNDVFWEQFLTEDPGASEAQEVQSERKEYNGRKSEGKPTDHGRFWWNARNANNLPEQVGHVSQAEK T
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10015
2 397 396 2.4E-139
IPR027725
PANTHER
PTHR10015:SF292
2 397 396 2.4E-139 –
Gene3D
G3DSA:1.10.10.10
5 104 100 2.0E-38
IPR036388
SUPERFAMILY
SSF46785
9 103 95 2.31E-35
IPR036390
SMART
SM00415
10 103 94 2.4E-61
IPR000232
Pfam
PF00447
14 103 90 1.9E-29
IPR000232
PRINTS
PR00056
14 37 24 2.2E-19
IPR000232
PRINTS
PR00056
52 64 13 2.2E-19
IPR000232
ProSitePatterns
PS00434
53 77 25 -
IPR000232
PRINTS
PR00056
65 77 13 2.2E-19
IPR000232
Coils
Coil
125 180 56 - –
MobiDBLite
mobidb-lite
346 379 34 - –
MobiDBLite
mobidb-lite
353 376 24 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0381000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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