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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0382800 |
| Transcript ID | LotjaGi4g1v0382800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SH3 domain-containing protein 1; TAIR: AT4G18060.1 SH3 domain-containing protein; Swiss-Prot: sp|Q8L7W0|SH3P3_ARATH SH3 domain-containing protein 3; TrEMBL-Plants: tr|I3SJQ0|I3SJQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0382800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76159722..76164474) extracted from Lotus japonicus Gifu genome v1.2.
AATCCGGGTAGGCCAAAATTTCAGAAATTGATGATGGGTTTTGTCATTTTAATTCATTGTTCTGAAATGCATTTGGAAAT GGGTTTTGCTTGATTGGTGATTTTGTGCTGTTTGAACTGAGTTTAGGTTCAGCAAGATGCTATTTTTGTTAAGTAAGGTG TTGTTAACTTGAACTCAATTATTGAATTTGGATGGTGCTGCTGCTTTGAAGTTTTCCTTCCTCAATTCACTGTTTCAGTT TAATACTATTTTCCAATTTGTGATCTGAGTTAATAGTAATACACTTGTTTTTTTTTGTCAGGCTGTAATAAAGCAGTTCA GCACTAGTGGTTATGAGAGCTCAGATGTTGTGGTCATTGATGAGGGTGAAATGCAGATACATCAACAGCTGGAAAAGCTG TACAAGGCCACCCGTACAATGAGGGTACGCATTTTCTTCTCATGTTTAGATTAAGCATAAGCTTTGCTATGTTTGTGCAC CAAAGAATTTGTCCCGTCACGAGGTCAGGGTAGTACGTTATATGTATAGTTAGAAAGTCTATTCAATATTCATGTGTTGT GAGTAACATTATTGTGTCTGATATTTATGGACTCACATTTTTTTATAACAACTTTTTGTGTCAAGCCTGGATCGGGTTCG GATTCGGGTGGGGGTGGGGTGGTTAATTATGCCTGATTATTTCCTTTTTGCTTCCCTCATGACCCCAACCCCAAACATTG ATATCACACACCTGACCTTATTCCAGCTTGGATATATCTTAGTTACGGGAGGTTTATCAATGATTTTCCTTTTTGTGTTG GTACTGTTTATTGATTGTTGTTATCTTCTGATCCAGGAATTTCAAAAAGAAATCGTAAAAGCAGCAGAGACATTTACAGC TATAGGTTATAAACATATTGAAACAGGTGAAAATTAGTTTTTGTTTCTTTTGTCCTACAAATTCAGTTTACTCTGATTAG TCATGTTTGAATGTGATTTGAATTACAAGCACCCACTGGCTTACAACTGTGAGTAAATCCTCATAAATGATAACCATGGT AGACAGGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAAAACAACATTGACAACATATTGGCAAAGGCTGCA TCAGTATTAGGTGATGCTCGCAAACATGTAGAAAAGGAGCACGAAGAATTAAATCGGCTTTTAGCTTCCCAGGTTGGCTT TTCATATGTTGTTCAGGTGTATAAGTTTTAGTGCGTAGTTCAACAGGAGAATCTGTTAGTTTTATCTTCTAGGTAGTAGG TACATCTGAGCTTTGATTATGTCTAGCTGCCTATTACTCCATTTATGCCTTTTCTCCATTATCTATATGTGTCCGTACTT ATGGAGGATATCTATGTGACATTCGAAATCCTCTAGGAAGATCATTATAGTTTATTATTGACAGTACTTCTGAATAAAGA GGAGAGAAGCATGAATACAGTGGTTTGAATTTCCAGGTTTTGGATCCTTTGAGACAAATGATCAATGGCGTACCTTTGGA GGATGCTCGCCACCTTGCTCAACGGTATAGCCGGATGAGACAAGAAGCAGAGACACTGGTGAGTCAACGTTTGAAATGAA TTAATCATCTCTAGAATAGAATCAACATTGACTTGATCGCAATTTGAACTCTGTATCTCATAAATGAAATTGAAGTCTGT CATATCTGGATCAACCAGCAACCATTATTGTGTTTGGCGCAGTATAAATAACCAGAAAGGTAGAGATGAATATTTCTTGA AGTTATTGGGAAAAAAGATAAAGAAAGACTACAAATAAATGTGAAGTGATAACTGATAAATGTGTTAATCTGAGATACAA AACAGTAAACTAATACTCATCTAATCCTATTTATACGGATCCTGTAGGTCAAGTAGAACGGTTCTAAGCTTGGCCCAACA ATACTCGTAACATAGTTAGACTCCTAAAACATGTTAATTGTCCTCAAGTTGAACTTCTGTAGATCTCATGGTAGCATGCA TGGAGGAGGAAGGTGGACCGACTCTAGGAATGCGCTAACTGGAATGTACGGGATCTCCTATGCACAGACTCCAATATCGG CATGGAAAACACTCTTCTGGCAACTACAAATAGGTGAAAAAACACTTAGCTTTGGGTGGCCGATGTCAAAAGACAGCTTA TGGGGAAGGAGAGCGTCATAGTACACAGATACAATGGGGAGGAAATGATAGAAACTAGGAGACTCGGTATAACTTTAAAG TGATTTAAGAGGTTATCATTTGAAGTAGAAAATATTAAAGTGTAATTCCACTAGTATGAGCTAATTCACTCGTAACCTAG TTACACTCCTAAACTGTTAGAATCATAATATTCTAACAGTATGCTCTTGACTTCATATTTGTGCTACAACATTCTGCTTA GCGGAAAACAATGGACTAAAATAATGGTGAGGGTTTTAATCTAATACTATAGCTGGAGAAAGGGACACTAGCAATATTGA TATGATTTAAAATGTGATACTTTGAAATACAAAACATTAACCTATCGCCCCTGTTTTAACTAATATTCTAGTTTATGTAC TAGTGTAATACAAGTACCTATGAGTTCAATGATATTGATATGAGTCATAATGTTCTAATATTATGCTTTTAGATATGGGT CCTTCTCTATAACATTCACTTCAGAGTTTGATGTTCTTTGTTGTTTCTTCTTAATCTGATAACTCAAAATGATTTTAAAA ATTCAATCAGAGGGAGGAGATCTCTAAAAGACAAGTACGGGTTAGGGAATCTCCAACTTCCGAACAGGTTGCCAAACTGC ATGCTGCTGAGGCAAGGATGAAGGAGCTGAAAGCAAATATGGCTGTCCTGGGCAAGGAAGCTGCAGCTGCATTGGCTTCT GTTGATGCACAACAGCAGAGGCTGACTTTTCAAAGGCTTGTTGCTATGGTATCATGATAACACATGATTTTTATTATATT AGCTTATGCAAAACTTGTAATTATTTTGAATTTTTTTTTCAAAGATTGTGCTTGTTGTTTTATAGGTTGAAGGTGAAAAG ACTTTCCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGGTGAGAACTAATTATACTGAAGTTTTGAGTTT TTATTATTAGTTCATTACATTTTTATTTTGTTCCTATGAATTAGGTTCATTTTCTTATCATCAATAAAATTTCATCTCAT TGGAACTTTTTCTCAGATGGTCTCTGACAGACAGAAGAAAGAATCTGCCCCTCCAGTGGTTGTGTCTGAGAATGGCTCAG GGAAAACGATGTACTTCTTGGCTGAAGTATGCTTCATATTCCTAGACCTAATTTTCCCCTTAATTATTATTATTTTATTA AGTAGAAAAAACCAAAGTTTACAAATATATTTTCTTAATTTCATTCCTTTGTATTTTAAATTCCTTTTGTGTATACACTT GATACAACTGATTAATTGCTTAATTACTAAATCATAAAAGTCTAATATTCTCACTGAGGAATTTCATTAACTCATGATTA AATGAATTAAACAGAAATTAGATGTTTAGTTAGATAATTAATATAATTCAATGGTCTGTTAAAATTTCTGCTAAATGTAA ATTTATTCACAGCTTTCATCTAATGGCTTCAACTTTTACAATAATTGGTCCTTGACATTATCACAGTGAATACCAAATAC CCATAAAGACAAATGAGTCAATGTTGATAAAGTTTTGACTTCACTTAGTAATCAAGCCATTTCTTATATAGAAAGCTTAG AAATCCTAATTTGATCAATCTAGGGTGAGAAGATAATATTAATAACATGGTTCTCATGATTGCGGCTAATCCCGCAGTTG GTTGCCTGTCTGAATTGCTTAGACAAGGAACCCAACTGATTCGTGTAATTACGATATAGAATCATATCGTTCTGGCAATG TGAATTAGGTCTTATGAACAAATCATTTTCTTCTTCATCAACTAATCTTCGGTACATGGTGCATCTCTTGCAGGCAACAC ATCCCTTCTATGGTGATTCAGAAAAGGAACTAAGCTTTTCAAAGGGTGACTTTATTGTTGTGCGAAAGGTGTGTTTTTAT GCTGTTATGTGTTCTTTTCCACTTGATTCTCTTCAAAAGAAAAGATTGATATTCTCCCAGGATCTGTTTACATTTAGCTA AAATGCTTTCAATTTTTGTTGGCTACATTCATATCAATCAGATTCCTACAAGTCTAGGTCCAAAACTGCTGAAATAATTA TATTAAATCGGCAAAATCGTTATCTTCTGAAAAAATACTTTGAACATATATAATTATATAGCTAAGAATGCTCTGTGCTA GTGATGTCACTGGAGAAAATGTTTAGAATAGTTGGGTGGTATCCACTATTTGGTGATATTTCCGGTGTGAATATTAGTCT TGTCCTGGTGTGCGTGTCGGATGTTTGTGTCAGAGTCGGTGTTTCATAGGGTTGTATTAGGGCTGTATCGCTATCTACTG ATATTTCCCGTACGAAGTATGGATAATGCATTCCATCTTGTATCTTGTCACCAATTTTTGCTTCTAACCTGTCATCATGA AATTTGCTTGATCAATTGGATTTGATCTCTTTCTGAGTCCCCATGTTCACCAAAGTTCTTAATGTTTACACAGGTGACTC CAACAGGGTGGTCCGAAGGAGAATGCAATGGTAAAGCAGGGTGGTTTCCTTCTGCATATGTGGAGAAGCGACAAAGAGTC CCCTCTAGCAACTTTTCTAGTGAAGTTTACTAG
CDS sequence (LotjaGi4g1v0382800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATACATCAACAGCTGGAAAAGCTGTACAAGGCCACCCGTACAATGAGGGAATTTCAAAAAGAAATCGTAAAAGC AGCAGAGACATTTACAGCTATAGGTTATAAACATATTGAAACAGGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAG CAGAAAACAACATTGACAACATATTGGCAAAGGCTGCATCAGTATTAGGTGATGCTCGCAAACATGTAGAAAAGGAGCAC GAAGAATTAAATCGGCTTTTAGCTTCCCAGGTTTTGGATCCTTTGAGACAAATGATCAATGGCGTACCTTTGGAGGATGC TCGCCACCTTGCTCAACGGTATAGCCGGATGAGACAAGAAGCAGAGACACTGAGGGAGGAGATCTCTAAAAGACAAGTAC GGGTTAGGGAATCTCCAACTTCCGAACAGGTTGCCAAACTGCATGCTGCTGAGGCAAGGATGAAGGAGCTGAAAGCAAAT ATGGCTGTCCTGGGCAAGGAAGCTGCAGCTGCATTGGCTTCTGTTGATGCACAACAGCAGAGGCTGACTTTTCAAAGGCT TGTTGCTATGGTTGAAGGTGAAAAGACTTTCCATTTAAGAGTTGCAGCTATTCTTGGTGAAATTGAAGCTGAGATGGTCT CTGACAGACAGAAGAAAGAATCTGCCCCTCCAGTGGTTGTGTCTGAGAATGGCTCAGGGAAAACGATGTACTTCTTGGCT GAAGCAACACATCCCTTCTATGGTGATTCAGAAAAGGAACTAAGCTTTTCAAAGGGTGACTTTATTGTTGTGCGAAAGGT GACTCCAACAGGGTGGTCCGAAGGAGAATGCAATGGTAAAGCAGGGTGGTTTCCTTCTGCATATGTGGAGAAGCGACAAA GAGTCCCCTCTAGCAACTTTTCTAGTGAAGTTTACTAG
Protein sequence (LotjaGi4g1v0382800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIHQQLEKLYKATRTMREFQKEIVKAAETFTAIGYKHIETGTKLSEDCCKYGAENNIDNILAKAASVLGDARKHVEKEH EELNRLLASQVLDPLRQMINGVPLEDARHLAQRYSRMRQEAETLREEISKRQVRVRESPTSEQVAKLHAAEARMKELKAN MAVLGKEAAAALASVDAQQQRLTFQRLVAMVEGEKTFHLRVAAILGEIEAEMVSDRQKKESAPPVVVSENGSGKTMYFLA EATHPFYGDSEKELSFSKGDFIVVRKVTPTGWSEGECNGKAGWFPSAYVEKRQRVPSSNFSSEVY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 305 | 305 | 1.8E-161 | – | |
| PANTHER | 1 | 305 | 305 | 1.8E-161 | – | |
| Gene3D | 2 | 218 | 217 | 3.3E-12 | ||
| SUPERFAMILY | 3 | 212 | 210 | 3.44E-26 | ||
| Coils | 104 | 134 | 31 | - | – | |
| Coils | 140 | 167 | 28 | - | – | |
| Gene3D | 228 | 302 | 75 | 3.8E-17 | – | |
| ProSiteProfiles | 235 | 294 | 60 | 21.23 | ||
| SMART | 238 | 293 | 56 | 2.8E-15 | ||
| SUPERFAMILY | 239 | 297 | 59 | 5.12E-18 | ||
| PRINTS | 240 | 260 | 21 | 7.9E-5 | – | |
| Pfam | 242 | 290 | 49 | 1.6E-10 | ||
| PRINTS | 260 | 276 | 17 | 7.9E-5 | – | |
| PRINTS | 276 | 289 | 14 | 7.9E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0382800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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