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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0388000 |
| Transcript ID | LotjaGi4g1v0388000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|I1KSR1|I1KSR1_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0388000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76635396..76640343) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTGCTATTTTTTACTTAGACCAATGGTCAGTTTTGTGATTCTACAAATCGTACATATAACTTTGCTTCATCTATGG CTGTGGTTTCTCTACTCTCCATATCCTTAATCTGCTGTAACTTTAAATCCAACCTATCAGTAATCTCTGAGTCTTTTTTC CCGCTTTGCTATTGAAACAGATTAAATATCTATTTTTCATTTGTATTTTCAAGTGGCGATTGGCTTCTCTTTTAAATGGA TGTATTTTCTTTTCATTGCAGTATCAACGAGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACAATCC ACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGTGGTC TTGGTGAGGTCCTGGGTGGCAACGAACTCATTGATAGCCAAATTGAGATAAAGTTTCTAAGTATGGAGGCTTTTGTTGTA CTATTTATTTCATTAAAGAACTCAATAAAATAAACTAGCTTTAATGGATGCTCCTTTTTTCAGGAAATGTGGATAAGACT GTCTTTTGCCAGATAGATCTCAGTGATGCAAATGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAATT CTTCATGGGTATGTTTTGCATGGTTTCTTGCACTTATTACTTTGAGAACTTGTAGAATGATTGTAATCTCAACAAATGTT GAAAGCTCAAAGAAAATTTTCTTTGGTCATCACGTTAACACAGAGGATAACATAGCTACAACGCAGAAATGTATAGCAGA GGTTACCATAAAACACTCACAAACTAAGAAACACATATCACTACACTTGGGGGAGAACCCCTATTTGACTGAACAAAGGG GTTGAGGTGAATAATATTTCCATTCCACAGGACCTATCCCCTTGCTTGTTGTATTTGCTGTCCAATTCACTGTATTACTT CACAGCCTTGGAATCATATCAGGGAGATCTCATTAGAAGAGGCGAGTAGTAATTTTAGGTAATGAAAACTTCCAATCAAT CCCCGAGGAGACTGAGCAAGCAATGAAGTGGCTTGAGAATCAGTTTCAAACTCACCAGAACAGTGAAGTGCTCATTTGTA AACTAAGTCCATTCCTTGATGTTATAGAATTGGATCAGAATCAATTGAAAATAAACAGTTTTTAAGATAAAGTCAGTCCC AGCTGAGTATCAGATTAATACGAGAACTAAGATTAAGATGTTAATACAGAAAGAAATCAGAAACAGATCCTTCAAGTTAT CCGTATTCATTTCTCTAACCCCCACTACTAATTGACAGTTATTGTAATGAAAACTACTTGTGATTCTAATCTTCTATTAC CAATTTTCCCCTTCCTACTATAATCCCTCATAGTGAGACGTGAGGTTTGGGCTTCTGGAGTAAGACAAACACTTGAATCT AGTTCTGGGTTTCGCTATTTCATTTCAACCACACCGATAGCTCAATGGTGATTGTTCATAAGGATACCAATCTTTGTCAA AGAACAGAGAATTGAAATTTCTTGGAAGTTTGGATCACACTTGTACATAATGTCTTTGGAAATGTTGGAAGGCCTATTTT AATTCTACTAGATCAAGTTATTGACTCATTGAATGCATGTATTTATTGGTTTTTGTACAACTTAGATGAATAGGATTTCT AAGGTTCCTTTAAAATTTGAGAGATCAACTTGATCTGTTTCTTGAGGCTGTGATGGTGGAATATTTTGTTTTTGGTTGCA CCAAGGTATTCCCACAGCCGGCAACCATGAGATGAGACTAATCTCCACAATGCTCTGAGATCACATGGTGCACAAATATA AACATAAAATAAGTTGAAAGTTTATGACACATCTTGCTTGGCTTTCTCAGGTGGCTGGGTGTTAACTTAAATCACGTGCA TTCTTTATCTATGTTCTTTTCACAGCCAAGACCGACACAGTTTAATAGAAGATTAGAAGTAGAAAATTATATTATGTATT CCGATTATCTGGTTGATTGGGAACAGATTCATTAGTAGTTGAGCTGCTATTTTCATCATGTATGATTATTGACATAGAAT GCTTGAAACACTGACTATATATTCTTCAGCATGGAAGCAAAGCTTTGCTGCATTTTGATCTACTAGGCTGGGTATTTTGT GATATTTGTAGTCATCAGAACTGGAAGAAATATCAAGTTAAGAATTCTTGATGTAAAGTCATTTCTTAAACATTCTTGAT CTTGAATACCTTAGTGAGTGTTAGTTTTCCATATTATAAGCACTAGAACCGAAAGAAGTATGAAATTAATAACTCTGTGT GAAGTAATTTTCTTATGCATTTTATTATGTTTTTGCCTTAATGTTGCCAATGAGAATTTGTTGCTAGCTCCTCATTATTT GTTCTTATTTAGTAATTCCTGCTTTTCCCTCTTCTTTGGGTGAATAACTTACTTGCTCTTGTTTTTTCATATTGTTTTTT ATCTGCTCTGCGATGCGCTAAATACAAGTTCAGATGATCTACCTTTGTGGGGTATGGCTAGAACTGTCTCTTCCTCTTTA TCTTTATTTGATATGATTTTGTATTTCATTTATTCATCATTACTGACTATGCTTTTTTCCCCCTGTTCAAGGATATGTTG GTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTACACACACAAGAATATTATTGTTAAATACAAC AACGATCAGGTCAGAAGTTATTTAAATTTCGTACTCTATCTTTTGAGGGGTTTTGAATCCTTGAAGTTTCATATTTAGGT CTATTTCCTTGCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTTTGGAGGCAGGGAAACGTTTGGACATG ACATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGATGTCTACCTGGACTACCCTTTCTTTGA GCATCAGGTACAGCTTTGTTTTTAAGATTGAAATGGTGTTTACAATTAGTTAGTTCTGGCTATGTGTTCATCCATGTTGA TCCTACCTTCGCCTGTCACTGAAAATTTTGCTCTTTTTTCCCTTCTAGATCCATTGGTTCTCCATTTTTAACTCTTTCAT GATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGG AAGATGATGATTTGGAAACTCTGGTGATGGTTTCATGACTCATATCTGTTCTTATTTATGGGATATGGATTTTCTCCCTA GAAAAATCGTTCTAATTTTCAAAATTTGGTCATTATTTACATGCTTACAGGAGAGAGATGTTAGTGAAGAGTCGGGCTGG AAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCACAGCT AGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATTGTTGGGATGTTGTATGTCGGGTATGCACATAACCTTCAACTGA CTGTAACATTCATCTGAATGATGTATTCAATGACATTGTAGTTGTGCATAAATTTTACTTCATGTAATAAGCGCATGACT ATTGCTGCTTGCGTATCAAATATTTACAAAACTTCTAGTTTTTTTGTATGGACTTTATGTTGTTTGTCCTTTGCTCTTTC ATTCATTTTCAACTAAATTTCCTTCATTGCTTGTCTCAGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTC TCACATCATTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCGCGAAATGGGGGTAAGAATCTCGTTTAAGTTTGTCTG GGTGGCTTTGTCTAGGCCCCCCCTCTCTCTCAATCTTTATATAACGCTTGTTATCTGTTTGTTAGGTAAAAGCTGGATTA AATCCATGATCCTTACAGCTTCTATGTTCCCATTCATGTGCTTTGGAATCGGCTTTGTCTTGAACACAATTGCTATATTC TATGGCTCTCTAGCAGCAATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGC ACTTTTAGGCACAGTTGTTGGAAGAAACTTTAGCGGTGCTCCAAATAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCA TTCCTGAGAAGAAGTGGTACCTCACACCCTCAGTGGTTTCTCTTATGGGAGGACTGTTACCTTTTGGCAGCATATTCATT GAAATGTATTTCGTATTTACTTCCTTCTGGAATTACAAGGTGAATTACTGCGCTATGACTTGTTTCAGTAATAAACTTTC TATTCTACTTATTGGTTTGGTTATGAAGGTTACTTGTTCCTTATCAGAAAGAGCTATATCAAGGAAAATTGTCCTGATAA TGGTCATTTTAATTAAATATGTTTGTATTTCAGTGGAAGCTGAGTGAATACAAGCACTGTTAGCTTATATATTTTTTCCT CCTTTGTGACAAGCAGGTGTACTATGTGTATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTG TGACAATTGTGGGGACTTACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCG ACAGCTGTTTATGTGTATTTGTACTCGATATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTT CTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTTTATGCGGTACGTGTTCTTAAGTTTTATGCTGAATGA ACCCCATTTCCCTATTACCTGCATAAATGCTTTTATGCTTATTACTTGAACTGGGTTAAAGTTTTTCTTCTAACGTGCAG GTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAATATCAAGTGCGATTAA
CDS sequence (LotjaGi4g1v0388000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGTTTCTCTACTCTCCATTAAATATCTATTTTTCATTTGTATTTTCAAGTGGCGATTGGCTTCTCTTTTAAA TGGATGTATTTTCTTTTCATTGCAGTATCAACGAGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACA ATCCACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGT GGTCTTGGTGAGGTCCTGGGTGGCAACGAACTCATTGATAGCCAAATTGAGATAAAGTTTCTAAGAAATGTGGATAAGAC TGTCTTTTGCCAGATAGATCTCAGTGATGCAAATGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAAT TCTTCATGGATGATCTACCTTTGTGGGGATATGTTGGTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTC CTTTACACACACAAGAATATTATTGTTAAATACAACAACGATCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAG GCCTTTGGAGGCAGGGAAACGTTTGGACATGACATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCT TTGATGTCTACCTGGACTACCCTTTCTTTGAGCATCAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATC TTCCTTACTGGATTGGTGTCAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGA TTTGGAAACTCTGGAGAGAGATGTTAGTGAAGAGTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCT ATTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATT GTTGGGATGTTGTATGTCGGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGG TTATGTGAGTGGGGGAATGTACTCGCGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTCC CATTCATGTGCTTTGGAATCGGCTTTGTCTTGAACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGGC ACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACTT TAGCGGTGCTCCAAATAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCT CAGTGGTTTCTCTTATGGGAGGACTGTTACCTTTTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTGG AATTACAAGGTGTACTATGTGTATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAAT TGTGGGGACTTACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTG TTTATGTGTATTTGTACTCGATATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTT GGATACACTTTGATGTTTTCTCTTGGACTAGGAATTTTATGCGGTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAG GAGGATCTACAGAAATATCAAGTGCGATTAA
Protein sequence (LotjaGi4g1v0388000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVSLLSIKYLFFICIFKWRLASLLNGCIFFSLQYQREDPVTLWVNKVGPYNNPQETYNYYSLPFCHPSSSSSAAHKWG GLGEVLGGNELIDSQIEIKFLRNVDKTVFCQIDLSDANVKQFKDAIENNYWFEFFMDDLPLWGYVGELHPDKNSDNGKHV LYTHKNIIVKYNNDQIIHVNLTQDVPRPLEAGKRLDMTYSVKWISTNVTFGRRFDVYLDYPFFEHQIHWFSIFNSFMMVI FLTGLVSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRYLVILSAVVGTGAQLALLILLVILLAI VGMLYVGRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASMFPFMCFGIGFVLNTIAIFYGSLAAIPFG TMVVVFVIWAFISFPLALLGTVVGRNFSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFW NYKVYYVYGFMLLVFLILVIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYF GYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| PANTHER | 33 | 596 | 564 | 0.0 | ||
| PANTHER | 33 | 596 | 564 | 0.0 | – | |
| Phobius | 35 | 228 | 194 | - | – | |
| Pfam | 59 | 553 | 495 | 6.8E-169 | ||
| Phobius | 229 | 251 | 23 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 252 | 294 | 43 | - | – | |
| Phobius | 295 | 325 | 31 | - | – | |
| TMHMM | 298 | 320 | 23 | - | – | |
| Phobius | 326 | 330 | 5 | - | – | |
| TMHMM | 330 | 352 | 23 | - | – | |
| Phobius | 331 | 354 | 24 | - | – | |
| Phobius | 355 | 365 | 11 | - | – | |
| Phobius | 366 | 391 | 26 | - | – | |
| TMHMM | 373 | 395 | 23 | - | – | |
| Phobius | 392 | 402 | 11 | - | – | |
| Phobius | 403 | 428 | 26 | - | – | |
| TMHMM | 405 | 427 | 23 | - | – | |
| Phobius | 429 | 448 | 20 | - | – | |
| Phobius | 449 | 476 | 28 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 477 | 487 | 11 | - | – | |
| Phobius | 488 | 514 | 27 | - | – | |
| TMHMM | 492 | 514 | 23 | - | – | |
| Phobius | 515 | 525 | 11 | - | – | |
| TMHMM | 521 | 543 | 23 | - | – | |
| Phobius | 526 | 546 | 21 | - | – | |
| Phobius | 547 | 557 | 11 | - | – | |
| TMHMM | 558 | 580 | 23 | - | – | |
| Phobius | 558 | 586 | 29 | - | – | |
| Phobius | 587 | 596 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0388000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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