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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0388900 |
| Transcript ID | LotjaGi4g1v0388900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G09580.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3; TrEMBL-Plants: tr|I3SP02|I3SP02_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0388900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76734011..76737195) extracted from Lotus japonicus Gifu genome v1.2.
CGATTAGATTTGAACCCATGGATGAGGAAGTGAAACTGAAAAATTGAAGAAAACCTAAAAAAACTGAAATTATAAGACAT GGATCACCTAGTGATCTATGTCCAGATCCCAAGTGTTATTATCACCTTCAACCTTAGTTGCACCAAAAACCAAGATCTGA GAGAGAGAGAGAAAGTGAAAAGAGAGAGAAGAGGCTATGGAGATTAGAGCTATGTTAACGTTGCTATTCCTCTCTTTCTG CTTCTTCTCCACCAATCTCGTTCCCTCCGCTCTCGCTATCTGGCTCACCTTACCCGTCACCGGCACCAAATGCGTCTCCG AAGAAATCCAGAGCAACGTCGTCGTTTTGGCCGACTATGTCCTCGTTTCTGATGATCATTCCCACAATCCCACCATCGGC GTCAAGGTACCGCCTTTCCCTTTCTTTCGGACACCCTTTTGAGATTTCTTTCGTGGGTCGTTCTTCAATTTGCAACCCCT TTCATTTTTTTTTTTCGTAGAGATGTGTAGTTACTAAATTTGCGAGTTTTGTGCCCTAGAATATTAATTGTTTGTGGATT TGCTAGTTTGCAGTTTTGGAATATTGTTTATTTGCATTTGAAAGGTGGAATAAATAGTTGTTAGATTTAGCATTGATCTT GTAGAATTTATTGATGAAAGTGACATGCTTTCCATTAATTTAACATTTGACACTTTGTGGTGAGTTTGCATGCCTAATTT ATTGGTTGGAAGATCATATTTTGGATCACATTCAGGAGAATGGTAGATTTAGAATTTATAATCCTAATTTCTTTTGATGA CCCATAATTTTCTATTGTGATATTTTACATGAATGCATGCTTATCTTGTCTGTGGTGTTATAATAACTAGTAACAACTGT GACATGGATCAGTTGCATGATAACTCCAAATAAATGTCTCTATTCTGCATAGAGATGGGGTTGAATAATTGTGAAAAGCA AGCACTTCATGGAGATGGAGTGCGAATTTGGATCAACGTTTGTAACATTGATTTTGGTAAAATTGATTACAGTAAAGTGG GTTGAAAGAAGTGATCTATACTTGGATATATTTATGAAAAATGATTTTTGCTGGGCAATTTTGTTTAAATTCGCTTGTAA AATCTCATAATTGTTTATGTTCAACGCATAAACTACTCTCTTTAGTTTCCCATAATTGATTCTGGGTTTGAAATCAATTC TCCAAAATGACTCTCAAACATTGATTCTAGCCTCTAGGGTTTCCCAAGAGGCTGGGGAAACCAAACACAGTCGTAGACAT TCCACATTTCTATTATAGTTTAATTTCTGTTGTTGAGACCTACTTTATCAAGACATAGCACTGTTTTGATCTTGAATGAC AACCATCTTATATCAATTTGTTAAAAAAGGTTCATTGCTTGTCTCTTGGTTTTTAATAGTAATATGTTTTCTAGGTGACA TCACCAAATGGAAATAATCTTCATCACAAGGAGAACACAACACATGGTAGTTTCGCATTTACAACTCAAGAGACTGGGAA CTACCTGGCATGCTTCTGGATGGATGGGCAAAAGCAAGGAGGTGGCGAGGTTAATGTGAACCTTGATTGGAAAATTGGAG TCGCAGCCAAGGATTGGGATTCAGTTGCTAAAAAAGAGAAGATTGAGGTAACATCTTTGTGATATGTATATATATCATTT CTTATTTACCTGTTATACAGTAAGTATCGTGTTAGATAAAACTTATGAGTTTTAAGGGGGAATATGAGTATAGGGGGGCG GGGGGGCAGCTTAAGAAGAATATGGCATGCCTACAATGGTTTCTGCAGCTCCGCCACTGCCTCAAAAAGTGGGGGGATTT AGGGGGAAAATATTTCGGGTGACAAAAATATCCCTTCTCATGTTTTAAAACTTAAAACCCGTATCTTAAAATTAAGGGCG ATTGAAGTAAATCTGTTTTAAAATAACTCCTCTCTTCGCCAAACATGATAAGAATTAAATTCTCTACCCTTCCCTCCCTT CAGTTGAACCAAACACACCGTTAGAGCCTCAGTGATTTGTACTGTAAGCTGGATAATCTTTTACTGATTTCAATTGAACT GAAATGTTGAATTTTTAAAGGATTTTGATCCTCTAAGGGTTCTTCTTTCATGTTGTGAGAGAGAAACACAAATGCAAGTT TTATGGACCCTACTACAACTACAAATAATGGTAGCACTTGGTGTAGCTGCTTTTCCGCCTTTCTCTCTCAGATCATGAGA GCAAGGAACATGAGAGGATCCACATCCAACTTGAAATGTATTCCTCTTCTTTTTGCTTTAGAATGCTTCTTTATATTTTT GCTGATTTCTGTCTGTACTTGTGATTGATACCTAGGGAGTTGAGCTTGAGCTAAGAAAGCTAGAAGGAGCAGTAGAGGCC ATCCATGAGAATTTGCTCTATCTGAAGGGAAGGTAATTCCTATCATGTCAACACCTCAATCTCCTAAAAAGAATTCTTTA GCGCATTATTTTTTGAGTTCTCATATATGTTTACAAATGCTTTTTTTTTTTCTGGTTATTTGCTCAGGGAAGCTGAGATG AGGATCGTGAGTGAAAAAACTAATGCCAGAGTAGCATGGTTTAGTATTATGTCCTTAGGAGTCTGCATTGGCGTTTCAGC TTTGCAGTTGTGGTATTTGAAGAGATTCTTCCAGAAGAAGAAGCTTCTATAGATTGTGGTCATGTTAATTTAATTTTGTT AGTAAATCATCGAACATATAATAACATACATTTTTTATGAACTCTACTTAGTACTTACACGTAGTTGACAGGAATTTTTT ACACCACCTTTATAGTATCCAACTTTCCTTATCCACAGATGTTTATTATAATGGATTTAGTAACTGCCATCTTCGTACTT GTTTATGAATGTTCTGATTGCTAGTGTTACTGAGGATGTGAAATAAATGTTTGTGTTAATTTTCTGATAATAATATTATC AGGGGGAGTAAAAGGTGAGTTAGAGATGAAAGCAAGGAATGAATTATACTTCAAGATATTTGTAATGCATTAGATCAAAC TTGAAATTCTTGTTCGCCTTAGACAGATGTGTTACACAATGTTCAGGACATTGTGCAGAACATGTACACAACAAAACACA AGGTTAACCGTGATGTTTAAGTAACAAGAACAACAAAGTAAATAACACAAGAGTTGGTAACCCAG
CDS sequence (LotjaGi4g1v0388900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTAGAGCTATGTTAACGTTGCTATTCCTCTCTTTCTGCTTCTTCTCCACCAATCTCGTTCCCTCCGCTCTCGC TATCTGGCTCACCTTACCCGTCACCGGCACCAAATGCGTCTCCGAAGAAATCCAGAGCAACGTCGTCGTTTTGGCCGACT ATGTCCTCGTTTCTGATGATCATTCCCACAATCCCACCATCGGCGTCAAGGTGACATCACCAAATGGAAATAATCTTCAT CACAAGGAGAACACAACACATGGTAGTTTCGCATTTACAACTCAAGAGACTGGGAACTACCTGGCATGCTTCTGGATGGA TGGGCAAAAGCAAGGAGGTGGCGAGGTTAATGTGAACCTTGATTGGAAAATTGGAGTCGCAGCCAAGGATTGGGATTCAG TTGCTAAAAAAGAGAAGATTGAGGGAGTTGAGCTTGAGCTAAGAAAGCTAGAAGGAGCAGTAGAGGCCATCCATGAGAAT TTGCTCTATCTGAAGGGAAGGGAAGCTGAGATGAGGATCGTGAGTGAAAAAACTAATGCCAGAGTAGCATGGTTTAGTAT TATGTCCTTAGGAGTCTGCATTGGCGTTTCAGCTTTGCAGTTGTGGTATTTGAAGAGATTCTTCCAGAAGAAGAAGCTTC TATAG
Protein sequence (LotjaGi4g1v0388900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIRAMLTLLFLSFCFFSTNLVPSALAIWLTLPVTGTKCVSEEIQSNVVVLADYVLVSDDHSHNPTIGVKVTSPNGNNLH HKENTTHGSFAFTTQETGNYLACFWMDGQKQGGGEVNVNLDWKIGVAAKDWDSVAKKEKIEGVELELRKLEGAVEAIHEN LLYLKGREAEMRIVSEKTNARVAWFSIMSLGVCIGVSALQLWYLKRFFQKKKLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 6 | 214 | 209 | 4.2E-108 | ||
| PANTHER | 6 | 214 | 209 | 4.2E-108 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 27 | 9 | - | – | |
| SMART | 27 | 209 | 183 | 2.5E-65 | ||
| Phobius | 28 | 181 | 154 | - | – | |
| Pfam | 30 | 209 | 180 | 1.7E-49 | ||
| ProSiteProfiles | 37 | 149 | 113 | 16.013 | ||
| Coils | 140 | 160 | 21 | - | – | |
| Phobius | 182 | 204 | 23 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 205 | 214 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0388900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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