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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0390600 |
| Transcript ID | LotjaGi4g1v0390600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase, putative; TAIR: AT4G05430.3 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|Q9FJU9|E1313_ARATH Glucan endo-1,3-beta-glucosidase 13; TrEMBL-Plants: tr|B7FLD2|B7FLD2_MEDTR Carbohydrate-binding X8 domain protein; Found in the gene: LotjaGi4g1v0390600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76929317..76934693) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGGTTAAATATGTTTATGGTCCCTGTGTATTGAGGACAGTTTGAGTTTGGCCCCTAATTTTTTCAAAGTAAAGTAAC CATCCCTCCGATTACACTTTTCGTAACAAACCACCCTTAACTCCGCCAGTCCTTGCCAAATACCATCACCTGAGGGGACG TGGCATTGCCACGTATTAAATGAGGTTGACCTGAAATTTATTTTTTAGTAAAAATTAAAAATGACGTTTTTTTAAGGTTT TCATTTTTTATTAAATTAAAAATAAAATTAAGACACTCTAATTAACTTCCTAATTACATACCTATTTTAACAAATAAAAT GCAAATTAATAGTTCCTGGGTTCCTCTTCATCTATGTTCTTCATTTTCATATTCATCATCTTCTCCAGCATTAAAAATAT AAAATCCAGAAAATAGAATAATTCATCATCAAACCCCTTCTTCCATTTAATTCACCAAAAGCCTTAAAATCAATCCTCAA AACTAGATCTAGGGTTTCCTCATCAAATCACAACCCCCAATTCGTGGAACACAAACAGCAACAAAACATCCCAATTCGTG GAACACAATAAGCAGCAAATCAAGAAGCTTAACCGATCCCTTAGGCGAAGATGAAGAAGCAGAAGAAGCATCACCACTAA CCAAAACATCCATGACAACGTCCTCCATTTTCACCCAACCATATTCTTCTCCATGACCCAATACGCGGACCTCATCCAAC CGTTTCTGGCGAGCATGCCGAGGATGGCGGCGAACGCCGATTCAGACCCCCTGAAACCGGGTTGCCTCTCGGCCCAACGG AAGAACCAGAGAGCAGATCTGGGTCGGGTTCAGACTGAATGGAGGACCCGAACGAACAGCTCAGACTGGGGAAACCGCTG CGCGCAAGTGATCAGAAACAGGGGAAGGATTGTGGAGTGAAACGACGTCGTAGGGGCTGGAGGGGCATGTGCTGAAGGAG AAGATGAAGCGAGATTTGAGGGGTGTGGCTGCTGGTGTGGAGAAGACTCTGAAAGAGAGGGTCATCGATTGAATGGAAAA TTGGTGAATGGGTCTGCTGAAAGTGACAGAGGAAGATGGTGGAACCAAATCCAAAGATATCATTTTTTGCTAATTTTTCT GGGTTTGATGAATGATCCTTTATGCACCTGAAGATTGATGTTGAAGAGTGGGTTTTTGATGAAGAAGATATGCAGATGAA GATTTGTAAATAATAATAAGGTGAAAATAAATTCCAGGTCAACCTCATTTAATACGTGGCAATGCCACGTCCCCTCAGGT GATGGTATTTGGCAAGGACTGGCGGAGTTAAGGGTGGTTTGTTACGAAAAGTGTAATCGGAGGGATGGTTACTTTACTTT GAAAAAATTAGGGGCCAAACTCAAACTGTCCTCAATACACAGGGACCATAAACATATTTAACCCTTTATAGAAAAGGCTC AAATGATATCACTGTTGCTGCAGTCTGCCAAAGATAGTACTACTTGCTTCAGAAGTATACTTCATTGTTCTTCTCCATAA AAAAATTGGAAATCTCAGAAAAAGTGATAAAGAAAATATAATACCTCCTTCAAGTAACTTGTGATTCCATTGACACCAAC AAACAATACAGCTTTATTTCTCTCAAGTCTCTACACATAGCAACAGAATCATAGTGCTCAATAGAATAACTTGGAATACT AATCTCCTTCTCTCTATATATACATAAAAATACAATCTTTGGAGCAACAAGATTGGTTATTTCAAGGTGGAACAATGAAG AAGGAAATCTGGTTTTTTCTGTGCCTGGCCTTTTTGGCATGCTGTCTTGGTAAGCCTTTTTTTTTCTTTTTTTTTTTCAC TTGTTCTTGTAATGTCTATCCTAGAGAAAGTGTGTTTTGTGTGCTGTTTTTCTTGTGATTTGCTCTGTTTTCTCTTGATT TTGTTTTTTTCATTTGAGTTTTTGAAGCTGGGTTCTTGTGTTTCTTCCCATGCTATGTAGCCTTGTAACATACACTTTTC ACATTGTAGCTTGTAAAAGGGGAAAAGGAAAACATGATTCTTTTAATCTTTTGATTTGTAGGTATTGTGATGAAATATTT TTTCAACCTAAACCACTTTTTTTTTACCACCAAACTGGTAATTTTTTTATTTGGCAAACAAGGGTAGTTAAAAGAGGGAT GGGGTTCAAATACATTACTTCCATCCAGCCAGAATCCCCTGAAAACTCAATTTTTGCATATCTGAGGCATGGTCATACAT AAAGTCATGAGACCATTTGCTTTTATTTGTTTGCTCCTTTTAATGAGTTATTGACTGGTGATTCATAGGTAGCAGGGTTC ATGTTTAACATTCACATATTTTCTGGCTCATCAAACATTAGACACATCGATGTTAGTAGCAATACAGCCATGCCTTTTAC ATGCTAATTAGTTTAAATTTCTCTGTACTAAAATTGATTCTATTTTAGAAAAGTATAGCGTGTTCGGATCAGCATTGTCA CAATTGATTTTGTTAAAATTGACTGTAGTAGAAGTGAGTTGCAACAGAAGTGACTTAGGTTTGGCTACATTTCTGAAAAA AAAAATGGTTTTTGGGGGTAATGTTGTGAAATCTAGTTGTAAATATCACAATGGATTATGTTTAACATGAAAAAAACTCT CTTTAGCTTCTAGGAGAATTGATTCTAACACTGAAATAAATTCTCCAAAATGACTCTCAAACTATTGGTATGTTTGGTTT TCATCATGGGATAGCCAGAATCGATTATGATAACCAAAAAGAAGCAACTAATGGTAGCTTCTTTCCACCATAATTTTGGC TTGCCTGTGATTACAGCTTCATCATGTTTCTCCATCATGATCAATTCTGATTTTGAGGTTCTCCAACATGGAGCTAAAGA CAATCACAGTTGATCATGAATTTCAGGAAATAGAAAACTATTGAAGTATTAAATTGCTGGTATCATTTGTTTAATACTTA GTGATTTGTTTTCCTGCTTTCATGTCCTTGGCATAAATTTGTAGGCATGGCAAGGGGAATAGTGGTGCAAGAGAAGGCAG ATGCAGTAATCCCAGTGCCAACAACACCGTCACCACCAGAAGGCAACACTACATTCATTGATGGCACAACATGGTGTGTT GCACTTGCTGGAGTTTCCCAAGCTGACTTGCAGAATGCACTAGATTGGGCTTGTGGACTTGGAAAGGCAGACTGCACACC CATCCAAAAAGGTGGAGCATGTTATGAACCAGACACACTAGTTTCTCATGCATCCTTTGCTTTCAACAACTACTATCAGA CAAATGGGAATTCTGATATTGCCTGCAATTTTGGTGGAACTGCTACTTTGACAAAAAATAACCCCAGTAAGTTGAATATA AATGTTACTTAGTGTGCATGTTTGAAAATCCATCTAAATTGATTCTATGGATGAAATCAGTTATGCGGAGAAACTTCTTT GATTAGTTTCTGGGTGTCAGGAAAAATATTGATCCAAATATGTTAGCAGATTTGAATTATATTGGCATGTGATTAAAATT CCATAGCCCCACCACAAAATATGTGGATGCATTATGACATGTTCACAAAATGCCAACAAACAGTTTGTTACATGAATTTA GGAACTTTGTCTCAGGCATTTTGTATGTTTTTTGTTTCGGCCTTCATTCCCTTTTTGGTAACCTAGTGATGCACTTATGC AAATACAATATGTAAAACAAAAGTTGGGTGGTCCTTGCTGAATTTCTTCCTGGTTGATAAATACATGTCACTGTGTAAAG GTTCTGTAACTCGTGGCATTTTCATCCTTTTTGTGTGCAAGAAGGGTGAAAAGAGGTGAAGACAAAATTGGTTTAATGTT TGTTTGTATTCCATTGAAGCCACAGAAAATCAGCTTTTTTCAATCCATTGTGGGACATGAATTTTTGTTGAAAGTTTAAG GCTATATGTTTGGATATCCATTAGCATCAGTCAAATTAAATATTAGCACTTATTTCGAATAAAAAGTGAGTGGAACTCTT CTTATGAATTGGGATAAAACCGTTCACATTACACTAAACTGGCATTGAAACACACACTAAGCAATTTTGACCAATTAATC ATACTACTTGTGTACTTGTTCTTTTCTTTTGAATTTTAGTTTGGTTAAGTTTAAAATTGATTAACTAGTTTTCTATGCAA ATCTGCAATAAGTTCTTATACTTTGAAATACTGTAATGTGACTTCTTTTAGAAGAAAAGCAGAGGTTATTAGCTTTTGAG ATAAGCAATTGTTTAGATTTGTTATATATGAAAAGTACTTTATCATAGATACCTTATTTGAGATTATATTGTTGGGTACT TGGATTGTGTTCTTTTTTTTTCTTCAGAAAAGCATTATTTCTGATGTCAAAAGAGGACATTTGATGCACTATTTGTTGGA TACTTTCTTAAAATTAAGTGCAGAGATGGCTAGCCAAGTTTCTTCCCATAACCTTTAAGCTCAGTAATTAAAAGGTGCAT GTTTGAAAACTCATGTAGAGTTGAGTCTGAAGGCAGAATCAATTATGGGGAGAAACGTCTATGAGTAACTTTAGAATCTC GGAAGCTATTTTTATAGAGAAGTTGATATAGACATGTTATTAACAGGGTGGAGTGTTTCCTTGTGGACGTGTTCATACTT GGATTTTTACATGATATAATTCACACTGAACTTCTGTTTTTCTTTTCTGTGCAGCCTATGGAAAATGTGTCTATCCTTCA TCTGGGTATGTATGCTATCATATCATAATTGATCTGACAAAATTGAAAGAACCTTGTAAATATTTATTTAATTACATTCA TATTAATTTTTTTCATGTAACAGGTCTATGGTTTCTTCTGCTCCACCATCACTGAAGAAGCACAACCAAAGCTTGGTCCT GTCGAAACTTGCTGCCATGCTACTACTGCTTTTATACTTTTTGATGTGACTATGTTGTGGTCGGTTAGGAAGTTGACAAA AGGAAAAGGGAATTAGAGAAAGGTTAGGGAGTACACCTATGTTAGCATTTAGTAATTGTGTTTTTGTGGTTGCTAAGGTA TTCTTAGCTTTCAAGTTGGGTCATGACAAGAATCTATAATTGTGCAAAATGACCTCTTTTTGCAGCTTAATTTTGTTTAT CCCTTTCCCTTGTCCTCAATATTCTTTTTCTCTGCTTTCTGCCACTTTGATTGGTCCTTAGGTTCTTATTGGCACTAGGA TCAGTTGATGACAACAAGATAAGAGACTTAGCCTTTGGTTTTGGAAAAATAAATAGGTTCTTTCTCCTCCAAATGGTATC GATGGTTACTGCAAAAACTGTAACCCATTTTTCCAGACCTGTAGATTTATTGTAATCCTTCAAGATTTTAACTAGCCAAG TGTGGATATCCTGTTGG
CDS sequence (LotjaGi4g1v0390600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGGAAATCTGGTTTTTTCTGTGCCTGGCCTTTTTGGCATGCTGTCTTGGCATGGCAAGGGGAATAGTGGTGCA AGAGAAGGCAGATGCAGTAATCCCAGTGCCAACAACACCGTCACCACCAGAAGGCAACACTACATTCATTGATGGCACAA CATGGTGTGTTGCACTTGCTGGAGTTTCCCAAGCTGACTTGCAGAATGCACTAGATTGGGCTTGTGGACTTGGAAAGGCA GACTGCACACCCATCCAAAAAGGTGGAGCATGTTATGAACCAGACACACTAGTTTCTCATGCATCCTTTGCTTTCAACAA CTACTATCAGACAAATGGGAATTCTGATATTGCCTGCAATTTTGGTGGAACTGCTACTTTGACAAAAAATAACCCCACCT ATGGAAAATGTGTCTATCCTTCATCTGGGTCTATGGTTTCTTCTGCTCCACCATCACTGAAGAAGCACAACCAAAGCTTG GTCCTGTCGAAACTTGCTGCCATGCTACTACTGCTTTTATACTTTTTGATGTGA
Protein sequence (LotjaGi4g1v0390600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKEIWFFLCLAFLACCLGMARGIVVQEKADAVIPVPTTPSPPEGNTTFIDGTTWCVALAGVSQADLQNALDWACGLGKA DCTPIQKGGACYEPDTLVSHASFAFNNYYQTNGNSDIACNFGGTATLTKNNPTYGKCVYPSSGSMVSSAPPSLKKHNQSL VLSKLAAMLLLLLYFLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| ProSiteProfiles | 1 | 16 | 16 | 6.0 | – | |
| SignalP_GRAM_POSITIVE | 1 | 32 | 32 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 11 | 148 | 138 | 2.4E-57 | – | |
| PANTHER | 11 | 148 | 138 | 2.4E-57 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 158 | 135 | - | – | |
| SMART | 54 | 139 | 86 | 2.2E-49 | ||
| Pfam | 54 | 126 | 73 | 2.9E-23 | ||
| Phobius | 159 | 176 | 18 | - | – | |
| TMHMM | 159 | 176 | 18 | - | – | |
| Phobius | 177 | 177 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0390600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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