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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0394200 |
| Transcript ID | LotjaGi4g1v0394200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein, putative; TAIR: AT4G40060.1 homeobox protein 16; Swiss-Prot: sp|Q940J1|ATB16_ARATH Homeobox-leucine zipper protein ATHB-16; TrEMBL-Plants: tr|A0A0B2PBB7|A0A0B2PBB7_GLYSO Homeobox-leucine zipper protein ATHB-16; Found in the gene: LotjaGi4g1v0394200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77254997..77258185) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAAACGGTCCAAAATCCTGACCCGCAACCGGCTGAACCGGTAGACCAAAAAGTTGCATTTGAGTTGAATTTGGGGTT CATTTGATATCCAACCGCAGTAGCAGTCACCTAACCCCAGTCAGATTTTAACCCAGGTTGGTTTATTTAAAGACACAAAC TCTGCAAACTAAGCTTGGGCTGTGAACTTGTTCACCCTCCACTCTCTCCCATTTCTCTCCAATTTCTCTCTCTCTTTTCT CTCCAATTCCAAACTCTCTTGTTTTTCCTTCATAGTCCTATAAAATTTGGCCATGTAATCCTGTAGTAGAACAACAAAAA GAGACTATAGAGTGTGTGTGTAAGAAAGATAATTGGTCACATCTTCTGTTGTTTATAATTTGTTAGTTGTTTGTGTGTGT TGGAATTGTTAGATGGGTGTTGAAGAGGGAGAAGAAGTGTTCAGAAAGAAGGGACACATGGAAGTTAGTGGAGATACATG GTTGTATGCTAGCTGCCTTAAGAACTGTGCAAACTGGCGCTGTTTAAGATACCAATCTCCATCTTCAATCACTACTACTC CCTTTAAGTAAAAACAAACAACAACCTTGTCAAGTTGTGATCCTCTCACTTTTTCTTAATTACATTTTAAGGGACCAAAA CTTAAGTACCTTGATCTAACAAGATCTGTGATTTTCCACTCATGAAGAGACTTGGAAGATCTGATTCTTTAGGTGCTCTC ATGAAGATTTGTCCACCAACAACAGGTTAATAGATAAATCATAATTGAATTGAAACTTGTTCTTTTTTTTACACAATTCA AAACAACCATGATAGGTGTTTGTTCTTTGTCCTGACTCAACTTTTTTGCTTATTTTGGAGATCAATTATGCCAATTGTTT AGTTCTTCTTTGCTTTACACCTTTTTCCTACTGTATTGCATTACAATTTACAACTCATCATGTTCAATTATGCTTTTTTC TCTATATGGGTATCATGTTCTTCTGTGTTTGTTTCAAGAGACAGCAAATACTGTTTCACTAACCATGTTCTGTCTGATTT GAATTGACACAGACGAAAACCTCAGTCCAAGGAGCAACCACAACCATGTTTATGGAAGGGAGTTTCAGTCCATGCTGGAA GGACTAGACGAGGAAGGGTGTGTTGAGGAACCAGGACACCACTCTGAGAAGAAACGAAGACTCGGTGTGGATCAAGTCAA GGCTTTGGAGAAGAACTTTGAAGTAGAAAACAAACTTGAACCAGACAGAAAAGTGAAGCTAGCTCAAGAGCTTGGCTTGC AACCGAGGCAAGTAGCTGTTTGGTTCCAAAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAAAGAGATTATGGCGTT CTGAAAGCAAACTATGAAGCACTGAAACTCAACCATGATTCACTCCAACGTGACAATGAAGCCTTGCTCAATGAGGTAAC AAAATTAATCAAATTAACTAGATTCATGAACCCTTTTGATGAAAGTGTATTAAGAAACTTAAATTTTGGCTTATGGTTGC AGATTAAGGAATTGAAATCAAGGGTGCAAGAAGAGAACAACAACAACACTGAAAGTGATGCTTATGTGAAGGAAGAGATG ATAACCCTGCAAGACATGACTCCACTTTCTGAAACCGCCATTCCTGGATCCGATTCCAAGGAATTGAGCTATGATTGCTG CTTCAAGAGCTCTGATGATGGGGTGGACGGAACCACCACCGCGTCGCTCTTCGCTGAGAATCTGAAAGACGGTTCTTCCG ACAGCGATTCCAGCGCGATCTTGAACGAAGACAACAACAGTCCCAACGCGGCGATTTCTTCATCTGGGGTTCTTCAGAGT CACGACTTTTTCATTTCTCCAGGGTCATCTTCGTTGAAGTTCAACTGCTCTTCGTCTTCTTCGCCGTCATCCATGAGTTG CTTCCAGTTTCAGAAGCAGTACCATCCTGCACAGTATGTGAAGATGGAGGAGCACAATTTCCTCAGTGCTGATGAGGCTT GTAACTTTTTCTCAGATGAACAACCACCAACCCTGCAGTGGTACTGTCAGGAAGAGTGGAATTGACATAGAAAAAACAGA ACAAGAAGAAGAAAATCACAATCAACTTCCATGAGTTTTTGCAACAAAAAATAAGGCTTTTGGCACGGTGTATAGTGTTG AATTTGATGGAGATCTTTGTAAAAATGGAAACATTGAATGGGGAGGCTCTCTGGTTCATGACGCAGGCATTGCATGGTGA AGATGAGAGCGAAGGTGAAGGGAGAGAGAGGAAGGGTTGGAAGGAAGTGGTGCAGGCATGGTGTGGGGTAGGGGATGAAA GGTCGATGATGATTAAGGGTTAATTATCATTCATGACTCTCTCAGCCGTGCGGGGAAAGAGTAATTTATCATGAATAATT ATGATTAGGTCGTAATGAAATCTCTACTGTAAAAATTTTGCAATTGATTATGAGTAGAAATTTACTGTTCTCAATAGATG CTCATGCTTCTACTTTGTTTTTTCTCCTTTCCTTGCAGTTTTAATTATCGTTTTATTACCAAAAATTAAGTCAAGATTTA TATAAGAATATGATAGTAGTGTAATTATAACCAGTTGGCACAATCAAAATCAGTCCATCTTTAGTTCGTGAATTTGAGTT TTTAGTTGGGAATTGTTAAGTAGAGGGGGTGGAATAGAGTGTGGAGAAGTAATGAATGTGCTAATCCGATGTATGCACAC ACAAGGTAAAATTTGACTTAAGTATTTTTTTTTTGAAAGACTTAAGTATTTGTTGAATATTAATGAACTACCGAATTTTC AATTCTTCAATTTTTAAAATTTTAAAATATAATAATTTCATTTTTTTTGTTAGGTTTCATTTAGTGTACACAAGAATTTC CTTGTGTAAGGTTGCACAACCCTAGATTTACCTGTTATAATAGGTTACTTTTAATACTTTTTTTTAATTTTTTTCATCTA ATTATCATTTAACCCAAAAATATTTTTTAACCACCACCACATACAGTGGTTTGAGAAGAAAGTGGCGGCACCGGCTTCGA CGCCGGCGGTGGGAGGAGAGGTGGCGGAGGAAGAAACTTGTGCTATGACTCTTATTTATCAATTGAACATATACCAGAGA GAGGATTTGCAATCCCTAAAAAATGTTCCTTTGGATCCAACCGTGGCACCCACAAATTTTCAACCTTGG
CDS sequence (LotjaGi4g1v0394200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGACTTGGAAGATCTGATTCTTTAGGTGCTCTCATGAAGATTTGTCCACCAACAACAGACGAAAACCTCAGTCC AAGGAGCAACCACAACCATGTTTATGGAAGGGAGTTTCAGTCCATGCTGGAAGGACTAGACGAGGAAGGGTGTGTTGAGG AACCAGGACACCACTCTGAGAAGAAACGAAGACTCGGTGTGGATCAAGTCAAGGCTTTGGAGAAGAACTTTGAAGTAGAA AACAAACTTGAACCAGACAGAAAAGTGAAGCTAGCTCAAGAGCTTGGCTTGCAACCGAGGCAAGTAGCTGTTTGGTTCCA AAACCGTCGAGCTAGATGGAAAACCAAGCAATTGGAAAGAGATTATGGCGTTCTGAAAGCAAACTATGAAGCACTGAAAC TCAACCATGATTCACTCCAACGTGACAATGAAGCCTTGCTCAATGAGATTAAGGAATTGAAATCAAGGGTGCAAGAAGAG AACAACAACAACACTGAAAGTGATGCTTATGTGAAGGAAGAGATGATAACCCTGCAAGACATGACTCCACTTTCTGAAAC CGCCATTCCTGGATCCGATTCCAAGGAATTGAGCTATGATTGCTGCTTCAAGAGCTCTGATGATGGGGTGGACGGAACCA CCACCGCGTCGCTCTTCGCTGAGAATCTGAAAGACGGTTCTTCCGACAGCGATTCCAGCGCGATCTTGAACGAAGACAAC AACAGTCCCAACGCGGCGATTTCTTCATCTGGGGTTCTTCAGAGTCACGACTTTTTCATTTCTCCAGGGTCATCTTCGTT GAAGTTCAACTGCTCTTCGTCTTCTTCGCCGTCATCCATGAGTTGCTTCCAGTTTCAGAAGCAGTACCATCCTGCACAGT ATGTGAAGATGGAGGAGCACAATTTCCTCAGTGCTGATGAGGCTTGTAACTTTTTCTCAGATGAACAACCACCAACCCTG CAGTGGTACTGTCAGGAAGAGTGGAATTGA
Protein sequence (LotjaGi4g1v0394200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLGRSDSLGALMKICPPTTDENLSPRSNHNHVYGREFQSMLEGLDEEGCVEEPGHHSEKKRRLGVDQVKALEKNFEVE NKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNHDSLQRDNEALLNEIKELKSRVQEE NNNNTESDAYVKEEMITLQDMTPLSETAIPGSDSKELSYDCCFKSSDDGVDGTTTASLFAENLKDGSSDSDSSAILNEDN NSPNAAISSSGVLQSHDFFISPGSSSLKFNCSSSSSPSSMSCFQFQKQYHPAQYVKMEEHNFLSADEACNFFSDEQPPTL QWYCQEEWN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 7.2E-143 | – | |
| PANTHER | 1 | 327 | 327 | 7.2E-143 | – | |
| SUPERFAMILY | 44 | 118 | 75 | 5.56E-19 | ||
| Gene3D | 56 | 123 | 68 | 1.2E-17 | – | |
| ProSiteProfiles | 56 | 116 | 61 | 17.005 | ||
| SMART | 59 | 120 | 62 | 2.2E-17 | ||
| Pfam | 61 | 114 | 54 | 7.4E-16 | ||
| CDD | 61 | 117 | 57 | 7.80976E-16 | ||
| PRINTS | 87 | 96 | 10 | 9.5E-6 | ||
| ProSitePatterns | 91 | 114 | 24 | - | ||
| PRINTS | 96 | 112 | 17 | 9.5E-6 | ||
| Coils | 115 | 163 | 49 | - | – | |
| Pfam | 116 | 157 | 42 | 1.4E-17 | ||
| MobiDBLite | 223 | 242 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0394200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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