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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395500 |
| Transcript ID | LotjaGi4g1v0395500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-25; TAIR: AT5G65270.1 RAB GTPase homolog A4A; Swiss-Prot: sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A; TrEMBL-Plants: tr|Q39844|Q39844_SOYBN Small GTP-binding protein; Found in the gene: LotjaGi4g1v0395500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77364283..77366588) extracted from Lotus japonicus Gifu genome v1.2.
ATCGAAAATGGCGAGTGGAGGAGGCTACGGCGATGCGAACGCCAAGATAGACTACGTCTTCAAGGTGGTGCTGATTGGCG ACTCGGCGGTCGGGAAGTCACAGATTCTAGCCAGATTCGCCAGGAACGAGTTCAGCTTGGACTCCAAGTCCACGATTGGT GTTGAATTCCAAACTCGGACTCTCGTCATCGATCACAAGACCGTCAAGGCTCAGATCTGGGACACTGCTGGTCAAGAAAG GTAGCTTCGCTTTTATTTCTACTTAGCTAGCTAGCTTTGCTTCCTGCATCGATCTTCGATTTTAATTTTTCAGTTTATAG CATCGTTTCGTGTTTGATCTGGTTATTATGATGAAGGATCGCGTGGTTTCAGTGAGTTTATATGATAATTGAGGTTACTG ACTTGATCTGTTGTTTACTTACTCTAACGATCATGCTTTGTGGTCAAAAAAATGTGTATAGACAAGTGTAGAATTGTAAC TGTTCATCGAGAATCTAGCAACTGTTTATTTTGTTGTATGAGTTTATGTTTAACGACTTTTATTGTTCATGTTCATGTAT TTTATCACAAATTTAATTATTGATTTTATTTGTCATGCTTGTGTTTTTGAACTTTGAGGATCCAAATCCATTATTGTAAT TGATTTGCTTCAAGTCATGAAGGATTTTGTGTTTGTTGTAATAAGCACAGGCTTAATTATTGATTTTTTTATTATTATGT ATGTTCATGTACTTTATCACATTTTTTATTATTGAATTCTTTTGGTCATGCTTGTATTTTGAACTTTAGAGGATCCGAAT CCATTATCGTAATTGATTTGCTTCAAGTCATGAAGGATTTTGTGTTTCTTGTCATAAGCACATGTTTTCTATGATGGTAT GGTTGGATATACTTGGATTGTTTATTAGTAGTAGCACTTCAATTGATGCAGGTGAAAACATGTTACTCTAACATGTAAGC AATCTTTGTGCTATTTTTAATGCATGTAGTATTTTAATAGGACTTTAATTCATTCATTGTCTTGTGTATGCATTGATGTT ATTTGTGGCTTAGAAGTGGGAGATTTATGTTTATTATTTTAGGTTACGGTAGTGGTATGTTATCCGAAATTTCTGGCATT GCAGCTCCTGTTATATATTACGAATAAAATATAAACGAAACGCAAGAAACTATTACGTGTCAAATATAGCCGTTCTCTTT GACAGGAAACATAGGAGTCAATTTGTATGATATAGGTCTCGTGTTTCTTTTCATAGTAATCTATCAACTTCCTTTGTGTT TCTTTCGCAATATGTATCAATTTCCTTTCCATCATATAGGTGATTTCCCAATGTTAAGTATATAGAAACCTTAGCTTAAA ATTCAGGCTCCTTGAGATTTAGCACACACAAATACGGATGTCTTTATGTGATAGATCATTATTAATGGAAATGACTCCAT GGACAATCTACGCTAGTTATTCACACTTGAAGGGGGCCGTGAGTTTGCAAAATATTAGTTTTCACTCTGTATCAGCTCAA TCCTTTTAGGAGATTGGTTCATAATAAGTGTTTCATAACTCTTAATTTTTTTATCAAGTACATTTACATGAGGCACAATT TGGTTTAGTACTATGTCATTTGACATGATTTTTTATTTGGTAGAAAGGAAGTTAAATTTATTCTGATTGGTAATTTGTGC ATGGTAACATAATTATTTTGTACATGTTTCCCTTTTTCCAGTTATTTGTAATCAACCATGTTTAGGATAGGAACCATTTT TTCCTGCGTGTGCGGCTGCGCTTGTTTGACGTGTGAGTGCATGCAGAATATTAAGTCAAAATTTAGTTGCCCTGATATTT GAATGGTTTATGTTCCAGATACAGAGCAGTTACAAGTGCATATTACAGGGGTGCTGTTGGAGCAATGTTGGTTTATGACA TTACTAAACGCCAGACCTTTGATCATATACCCCGTTGGCTAGAAGAACTGCGTAACCATGCTGACAAGAACATAGTCATC ATCCTCATAGGAAACAAATGTGATCTTGTGAACCAGCGTGATGTACCGACCGAGGACGCAAAAGAATTTGCTGAGAAAGA AGGCTTGTTTTTCCTGGAGACCTCAGCACTGGAAGCAACTAATGTTGAATCAGCCTTCACAACCGTCTTGACAGAAATCT ACAACATTGTCAACAAGAAGAGCTTAGCTGCTGATGAATCTCAGGGAAATGGGAACTCAGCTTCTTTGTCTGGTCAGAAA ATTATCATCCCTGGTCCTGCACAGGAAATCCCTGCTAAGAGGAATATGTGCTGTCAGGCATCTTGA
CDS sequence (LotjaGi4g1v0395500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTGGAGGAGGCTACGGCGATGCGAACGCCAAGATAGACTACGTCTTCAAGGTGGTGCTGATTGGCGACTCGGC GGTCGGGAAGTCACAGATTCTAGCCAGATTCGCCAGGAACGAGTTCAGCTTGGACTCCAAGTCCACGATTGGTGTTGAAT TCCAAACTCGGACTCTCGTCATCGATCACAAGACCGTCAAGGCTCAGATCTGGGACACTGCTGGTCAAGAAAGCACTTCA ATTGATGCAGGTTACGGTAGTGGTATGTTATCCGAAATTTCTGGAAACATAGGAGTCAATTTATACAGAGCAGTTACAAG TGCATATTACAGGGGTGCTGTTGGAGCAATGTTGGTTTATGACATTACTAAACGCCAGACCTTTGATCATATACCCCGTT GGCTAGAAGAACTGCGTAACCATGCTGACAAGAACATAGTCATCATCCTCATAGGAAACAAATGTGATCTTGTGAACCAG CGTGATGTACCGACCGAGGACGCAAAAGAATTTGCTGAGAAAGAAGGCTTGTTTTTCCTGGAGACCTCAGCACTGGAAGC AACTAATGTTGAATCAGCCTTCACAACCGTCTTGACAGAAATCTACAACATTGTCAACAAGAAGAGCTTAGCTGCTGATG AATCTCAGGGAAATGGGAACTCAGCTTCTTTGTCTGGTCAGAAAATTATCATCCCTGGTCCTGCACAGGAAATCCCTGCT AAGAGGAATATGTGCTGTCAGGCATCTTGA
Protein sequence (LotjaGi4g1v0395500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGGGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQESTS IDAGYGSGMLSEISGNIGVNLYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQ RDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPA KRNMCCQAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 78 | 73 | 1.2E-115 | – | |
| PANTHER | 6 | 78 | 73 | 1.2E-115 | – | |
| ProSiteProfiles | 13 | 246 | 234 | 34.499 | – | |
| SUPERFAMILY | 14 | 209 | 196 | 2.39E-56 | ||
| CDD | 15 | 202 | 188 | 5.04553E-117 | – | |
| Gene3D | 15 | 229 | 215 | 1.2E-64 | – | |
| SMART | 15 | 204 | 190 | 2.6E-18 | – | |
| TIGRFAM | 17 | 81 | 65 | 2.6E-14 | ||
| PRINTS | 18 | 39 | 22 | 1.1E-38 | – | |
| SMART | 18 | 204 | 187 | 6.1E-97 | – | |
| Pfam | 19 | 78 | 60 | 3.4E-21 | ||
| SMART | 20 | 200 | 181 | 2.3E-8 | – | |
| SMART | 23 | 244 | 222 | 8.1E-4 | – | |
| PRINTS | 41 | 57 | 17 | 1.1E-38 | – | |
| PRINTS | 59 | 81 | 23 | 1.1E-38 | – | |
| PANTHER | 94 | 246 | 153 | 1.2E-115 | – | |
| PANTHER | 94 | 246 | 153 | 1.2E-115 | – | |
| Pfam | 98 | 202 | 105 | 2.9E-33 | ||
| TIGRFAM | 100 | 197 | 98 | 4.2E-16 | ||
| PRINTS | 144 | 157 | 14 | 1.1E-38 | – | |
| PRINTS | 179 | 201 | 23 | 1.1E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0395500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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