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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0397000 |
| Transcript ID | LotjaGi4g1v0397000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein; TAIR: AT5G10260.1 RAB GTPase homolog H1E; Swiss-Prot: sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e; TrEMBL-Plants: tr|I1K4J2|I1K4J2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0397000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77475794..77478378) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTAACCATTCAAGGATCAGGATCCACAACTTTAGTAAGTGAAATGCTAGAATTGGAAGAAAAGCATGCTCTAGTCAT TGAGAAATCTTTTTCAAGGTCTCGATATAATTGCGTTGATTTTTAAAAGGCGTGTTCATTTGAAGTTTCCGACGTATGAT AAACCTATAATGCCTCTCGATTGTACAAGCCTCTATAAACGGCGTGTTCATGTTGATTTAGTGTTTACCTTTTTTCTTAT CTCCAGCCAGGTTGCTGACAATTTGTCTTTTTTTCACCAAAATTTCAGGCTACTATTGGTATTGACTTTTTGTCAAAGAC AATGTACCTTGAAGATAGAACTGTTCGCTTGCAGCTTTGGTAGGATGGGTTCCTCTTCAAATCATCTATATATACAAGCT CATTCTATTTATATTTGTTTATAAGTTGAATTAGAGTAATGTACTGTTATAGCCATGTAGACATTTTTACTCTATCTGTC CTTTTTACTATTTCTGAGCTTAGTATATTTTAACATCACAGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCC AAGCTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAGTAAGTTGTTTATAGTTTTGTCTAATATCA CCTTCGTTATCTAAGTAATAGGATTTTTTGGATGCTTACATGTAAGATATTTGATCATATTATTCAAAGGAAAATGTGTT GCATGTGAATGGATTCTTATTGTATAAGGTAATAGGTGTTTGAGTGAGTCTTAGTTCTCTAAAAAAATACGAACTCTCTC CGTCCCTGAATATGTGTGCTCACTTCCGTGCGCGTTCCTGTTCTCTTTTGCACTCTGTATATCTTAACTATGTCTGCATA TGGATCTGGAAGTGCTATAGTGTTAACTTTTCATATTAGTAACAATATATACAACTGGAATTTATAACTTCTTAATCTAA GTACGCTGTTCAAAATTTCTAATGTAGACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTACGTACAGAG CGCGGCAGTGACGTTATTATTGTCTTGGTTGGAAACAAAACTGATCTTGTTGATAAAAGGTGAGTGCTGATTTACCAACT TTGGTCTATATAGTCTTTTTTTCATGAAAGTTTTATACTCGTAACTGTTTTTTGCTGACCGGATATGCCTTAGTTTTTGT CTATTATCATTGGGTTCCCACATTATGTTTCAATGAATCTTGTTTAGTTACTCAAATTTTTGACATACAAATAAGTGCTA ATTTATCTGTTCTTAATGTTTTCTATCGTAGAGTAGGTGTCTAGCCATTGAGTACTTAACAGTCTAATTGATTGATTAAT ATGGTTTTGTTTCGTGAGACTTATGGTCAAGTGTCAATTCCTAATCCTTATTTAAAATAATTTATTAAGCATTATACATC ATTTATATGATATATTTCTTTCTGTTTTTCATTGTCTTTGAATGTTATGATTGAATATGATTTATGATTCATAATCATAA TTCAAAAAGTAACCTAGCGTTTCATGATTCTGATTGCAATTTGATAACCTGTTATTTGAGTAAAACACCATTTTTATCCC TAAAAGGTTTGCGGTCAGTCACTTTAGTTTGAGTATAGAGATAACAGAAAAAGTCCCTAAAAAGATGAAATTCTATGGTC ATTATAGTCCTTCCTTAATATCAATCTAGTCCCTGAAGAAAAGACCAGCAAAAGTTACATTTGAGGGACTTTTTATGATT TTCATCTTTAGTGATTAAAGTAATTGGCTCCAAATATTTTAGGGATGGAAATGGTGCTTTAGTTCTTGTTATTATCATAT CAAAAGCCATATTTTCCGTGAAGTTTATATCTACTTCAATTGGAGTTTCTATTTTGGGAGAGAAACGCAGAAGTCCGGTA GATTAAGTGTAGTTTTAGGATGGTAAAAGAAAAATCATTTTAGGGCGTGAAATTGTTGTGTTAGTGGTTACAAATAGTAC AAGTCATAGTTATCCATCTATACGCCAGGTAGCTTGTACTTGTTTGCCAATTGCCATTTGAGTATTGTGAATTATGATGT TGCCATCTGAATTTTATTTACATGGCCTATTTGATACTTAAACAGGCAAGTTTCTATAGAGGAAGGAGATGCCAAGTCTC GTGAGTTTGGAATCATGTTCATAGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGGTGAAAATTAATGAATTTTTGTGG TTTATTCGAGCATGTTCCTGAATTATTATGGCTGTGATCGATCATATCAAATATGCAAAAGTCCTGGCGTAATTTCCTTG CTTTTACATAGAATATATCCCTTCTAGAAAACTTCATATTCATTATCATATTCTCAAGTCTATCTTCTTTCACATGCTGG TTCTTACGTCCTGAATGATTTCTATCAATGTAAAATTGCAGCCTTTGTTTCGTAAAATTGCTGCTGCGTTGCCTGGAATG GAAACACTTTCTTCTACAAAACAGGAAGACATGGTCGACGTAAATTTAAAACCGACGGTGAATTCATCCCAGACAGAGCA GCAAGGAGGAGGTTGCTCATGCTAG
CDS sequence (LotjaGi4g1v0397000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCTTGAAGATAGAACTGTTCGCTTGCAGCTTTGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAG CTACATAAGAGATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAACAGGCAATCATTTCTGAACACTAACAAGTGGG TTGAGGAGGTACGTACAGAGCGCGGCAGTGACGTTATTATTGTCTTGGTTGGAAACAAAACTGATCTTGTTGATAAAAGG CAAGTTTCTATAGAGGAAGGAGATGCCAAGTCTCGTGAGTTTGGAATCATGTTCATAGAAACCAGTGCAAAAGCAGGCTT CAATATCAAGCCTTTGTTTCGTAAAATTGCTGCTGCGTTGCCTGGAATGGAAACACTTTCTTCTACAAAACAGGAAGACA TGGTCGACGTAAATTTAAAACCGACGGTGAATTCATCCCAGACAGAGCAGCAAGGAGGAGGTTGCTCATGCTAG
Protein sequence (LotjaGi4g1v0397000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDVIIVLVGNKTDLVDKR QVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 120 | 120 | 2.41049E-80 | – | |
| PANTHER | 1 | 156 | 156 | 6.6E-80 | – | |
| SMART | 1 | 123 | 123 | 1.2E-40 | – | |
| ProSiteProfiles | 1 | 157 | 157 | 22.853 | – | |
| Gene3D | 1 | 157 | 157 | 2.7E-44 | – | |
| PANTHER | 1 | 156 | 156 | 6.6E-80 | – | |
| PRINTS | 1 | 23 | 23 | 2.2E-21 | – | |
| SMART | 2 | 122 | 121 | 1.4E-8 | – | |
| SUPERFAMILY | 2 | 133 | 132 | 4.83E-40 | ||
| SMART | 3 | 123 | 121 | 2.4E-10 | – | |
| Pfam | 3 | 119 | 117 | 5.8E-39 | ||
| TIGRFAM | 7 | 116 | 110 | 3.2E-18 | ||
| PRINTS | 63 | 76 | 14 | 2.2E-21 | – | |
| PRINTS | 98 | 120 | 23 | 2.2E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0397000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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