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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0397000 |
| Transcript ID | LotjaGi4g1v0397000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein; TAIR: AT5G10260.1 RAB GTPase homolog H1E; Swiss-Prot: sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e; TrEMBL-Plants: tr|I1K4J2|I1K4J2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0397000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77475794..77478925) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGACGGTGTCCCCTCTCGCCAAATACAAGCTCGTTTTCCTCGGCGATCAATCGGTTGGCAAAACCAGCATCATCAC CCGCTTCATGTACGACAAATTCGACACAACCTATCAGGTTTTCTCTCCCTCCTTCCTTTCATTCCTTCATTCATTCGCAA TTTCGTTTTCGGTTTCTATTCTACGCTGATTAAGTCAAACTTCAATGTATTGTTGTTGATCTGTCGTTGATCTCTTGTTT TGTATCTTAGATTAAGCATTTACGACTTGCGTTAACATGTATAAGCATTGGAATGAATTTCGCTGCGATTTATGTTTAGT AAGGTCGATGATCGAACGTGATTAGGGTCTAGGAGGATGAATGAGGAGATATTGCATTCGTTGCAATGTGCTTTGAGAGA TATGAAATTGGGGGTGAAAGTTTGATGGACGAGTTTTTCTTGTAAATTTTCTGTTGAAACTCGTCCCTCAATTTTCACTC ACAAATTTTTAGGGAAAACCATTGTGGCAGCTAGGAATTAGACTAGTTGTTTGAAACTCCTGTTGTCATGTTAACCATTC AAGGATCAGGATCCACAACTTTAGTAAGTGAAATGCTAGAATTGGAAGAAAAGCATGCTCTAGTCATTGAGAAATCTTTT TCAAGGTCTCGATATAATTGCGTTGATTTTTAAAAGGCGTGTTCATTTGAAGTTTCCGACGTATGATAAACCTATAATGC CTCTCGATTGTACAAGCCTCTATAAACGGCGTGTTCATGTTGATTTAGTGTTTACCTTTTTTCTTATCTCCAGCCAGGTT GCTGACAATTTGTCTTTTTTTCACCAAAATTTCAGGCTACTATTGGTATTGACTTTTTGTCAAAGACAATGTACCTTGAA GATAGAACTGTTCGCTTGCAGCTTTGGTAGGATGGGTTCCTCTTCAAATCATCTATATATACAAGCTCATTCTATTTATA TTTGTTTATAAGTTGAATTAGAGTAATGTACTGTTATAGCCATGTAGACATTTTTACTCTATCTGTCCTTTTTACTATTT CTGAGCTTAGTATATTTTAACATCACAGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGA GATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAGTAAGTTGTTTATAGTTTTGTCTAATATCACCTTCGTTATCTA AGTAATAGGATTTTTTGGATGCTTACATGTAAGATATTTGATCATATTATTCAAAGGAAAATGTGTTGCATGTGAATGGA TTCTTATTGTATAAGGTAATAGGTGTTTGAGTGAGTCTTAGTTCTCTAAAAAAATACGAACTCTCTCCGTCCCTGAATAT GTGTGCTCACTTCCGTGCGCGTTCCTGTTCTCTTTTGCACTCTGTATATCTTAACTATGTCTGCATATGGATCTGGAAGT GCTATAGTGTTAACTTTTCATATTAGTAACAATATATACAACTGGAATTTATAACTTCTTAATCTAAGTACGCTGTTCAA AATTTCTAATGTAGACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGTACGTACAGAGCGCGGCAGTGACG TTATTATTGTCTTGGTTGGAAACAAAACTGATCTTGTTGATAAAAGGTGAGTGCTGATTTACCAACTTTGGTCTATATAG TCTTTTTTTCATGAAAGTTTTATACTCGTAACTGTTTTTTGCTGACCGGATATGCCTTAGTTTTTGTCTATTATCATTGG GTTCCCACATTATGTTTCAATGAATCTTGTTTAGTTACTCAAATTTTTGACATACAAATAAGTGCTAATTTATCTGTTCT TAATGTTTTCTATCGTAGAGTAGGTGTCTAGCCATTGAGTACTTAACAGTCTAATTGATTGATTAATATGGTTTTGTTTC GTGAGACTTATGGTCAAGTGTCAATTCCTAATCCTTATTTAAAATAATTTATTAAGCATTATACATCATTTATATGATAT ATTTCTTTCTGTTTTTCATTGTCTTTGAATGTTATGATTGAATATGATTTATGATTCATAATCATAATTCAAAAAGTAAC CTAGCGTTTCATGATTCTGATTGCAATTTGATAACCTGTTATTTGAGTAAAACACCATTTTTATCCCTAAAAGGTTTGCG GTCAGTCACTTTAGTTTGAGTATAGAGATAACAGAAAAAGTCCCTAAAAAGATGAAATTCTATGGTCATTATAGTCCTTC CTTAATATCAATCTAGTCCCTGAAGAAAAGACCAGCAAAAGTTACATTTGAGGGACTTTTTATGATTTTCATCTTTAGTG ATTAAAGTAATTGGCTCCAAATATTTTAGGGATGGAAATGGTGCTTTAGTTCTTGTTATTATCATATCAAAAGCCATATT TTCCGTGAAGTTTATATCTACTTCAATTGGAGTTTCTATTTTGGGAGAGAAACGCAGAAGTCCGGTAGATTAAGTGTAGT TTTAGGATGGTAAAAGAAAAATCATTTTAGGGCGTGAAATTGTTGTGTTAGTGGTTACAAATAGTACAAGTCATAGTTAT CCATCTATACGCCAGGTAGCTTGTACTTGTTTGCCAATTGCCATTTGAGTATTGTGAATTATGATGTTGCCATCTGAATT TTATTTACATGGCCTATTTGATACTTAAACAGGCAAGTTTCTATAGAGGAAGGAGATGCCAAGTCTCGTGAGTTTGGAAT CATGTTCATAGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGGTGAAAATTAATGAATTTTTGTGGTTTATTCGAGCAT GTTCCTGAATTATTATGGCTGTGATCGATCATATCAAATATGCAAAAGTCCTGGCGTAATTTCCTTGCTTTTACATAGAA TATATCCCTTCTAGAAAACTTCATATTCATTATCATATTCTCAAGTCTATCTTCTTTCACATGCTGGTTCTTACGTCCTG AATGATTTCTATCAATGTAAAATTGCAGCCTTTGTTTCGTAAAATTGCTGCTGCGTTGCCTGGAATGGAAACACTTTCTT CTACAAAACAGGAAGACATGGTCGACGTAAATTTAAAACCGACGGTGAATTCATCCCAGACAGAGCAGCAAGGAGGAGGT TGCTCATGCTAG
CDS sequence (LotjaGi4g1v0397000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGGTGTCCCCTCTCGCCAAATACAAGCTCGTTTTCCTCGGCGATCAATCGGTTGGCAAAACCAGCATCATCAC CCGCTTCATGTACGACAAATTCGACACAACCTATCAGGCTACTATTGGTATTGACTTTTTGTCAAAGACAATGTACCTTG AAGATAGAACTGTTCGCTTGCAGCTTTGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGA GATTCTTCTGTTGCAGTTATTGTATATGATGTAGCTAACAGGCAATCATTTCTGAACACTAACAAGTGGGTTGAGGAGGT ACGTACAGAGCGCGGCAGTGACGTTATTATTGTCTTGGTTGGAAACAAAACTGATCTTGTTGATAAAAGGCAAGTTTCTA TAGAGGAAGGAGATGCCAAGTCTCGTGAGTTTGGAATCATGTTCATAGAAACCAGTGCAAAAGCAGGCTTCAATATCAAG CCTTTGTTTCGTAAAATTGCTGCTGCGTTGCCTGGAATGGAAACACTTTCTTCTACAAAACAGGAAGACATGGTCGACGT AAATTTAAAACCGACGGTGAATTCATCCCAGACAGAGCAGCAAGGAGGAGGTTGCTCATGCTAG
Protein sequence (LotjaGi4g1v0397000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR DSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIK PLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 207 | 207 | 31.165 | – | |
| Gene3D | 2 | 174 | 173 | 3.3E-64 | – | |
| PANTHER | 5 | 206 | 202 | 4.1E-110 | – | |
| PANTHER | 5 | 206 | 202 | 4.1E-110 | – | |
| SMART | 7 | 173 | 167 | 7.0E-33 | – | |
| TIGRFAM | 9 | 166 | 158 | 8.9E-29 | ||
| SUPERFAMILY | 9 | 183 | 175 | 3.98E-58 | ||
| PRINTS | 10 | 31 | 22 | 7.0E-38 | – | |
| CDD | 10 | 170 | 161 | 1.8064E-113 | – | |
| SMART | 10 | 173 | 164 | 1.4E-83 | – | |
| Pfam | 11 | 169 | 159 | 3.3E-57 | ||
| SMART | 12 | 172 | 161 | 1.6E-13 | – | |
| SMART | 15 | 207 | 193 | 1.6E-5 | – | |
| PRINTS | 33 | 49 | 17 | 7.0E-38 | – | |
| PRINTS | 51 | 73 | 23 | 7.0E-38 | – | |
| PRINTS | 113 | 126 | 14 | 7.0E-38 | – | |
| PRINTS | 148 | 170 | 23 | 7.0E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0397000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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