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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0398200 |
| Transcript ID | LotjaGi4g1v0398200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein spinster; TAIR: AT5G10190.1 Major facilitator superfamily protein; Swiss-Prot: sp|B0JZE1|SPNS2_XENTR Protein spinster homolog 2; TrEMBL-Plants: tr|A0A0L9TJA5|A0A0L9TJA5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0398200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77574558..77576195) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGATGAAGCAAGAGACAGTGACACTGGTTCTGGTGAATCTAGCAAGCATTATGCAGAGAGCTGATGAGTCACTGCT ACCAGGAGTTTACAAAGAGGTTGGTGCTGCTCTCAACGCTGATCCCTCTGCCTTAGGTTCACTCACTCTGTTTCGATCTC TGGTTCAGTCTCTTTGTTATCCACTTGCTGCATACTTCGCCACCCGACACAACCGTGCACATGTCATTGCTCTTGGTGCT TTTCTCTGGGCAGCTGCAACATTCCTCGTTGGCATCTCCTCCACCTTCTTACAGGTCCTTTTGTTTCTAAGCTTGTTTTG CTGCGCATTTTGTTTTGGTTATAGACTTATAGATCTGTAGGTGTTTAACCACATAGAACTTTTGTTTTTTCGTTTTTCAT TTTCTGGCGGTTCTGAATGTTCTGAGTTGACTTATCAAATTCACTTTGGAAGTTACTCTTTACTCAGATCACCAATGAGA TCAGCAATGAGGTTGAAGTTTAGCAGCCAAGATCTTTATCAAACATGTTCATCAGAAATCATGATTTTTTATACTGTTCC ATTGCTTAAATATACCACTTTTGTTAGTTTTTATTGTAAATATCCTCTAGCGATCCATCATAATTTTAAATGGAATCACA CCAAAATTATTTGCATGATAAATGGTAATTGCTCTCTCCAAAACTCTGGGATTATACTTAGTGACAAGCACATAGCCTAG GTCTCAGTAGTATTATTGTAAGAGTGGAGATGTCTTAACCATGTTACCTTAGTCTTTTTATAGGATTAAGGGCACTTAGA CTCAGTAACAATTTTGCATTACTATGATCAACCCATGTTATCTAACTTGTTGCATAATTTGGATGATCAGGTGGCAATTT CAAGAGGCTTAAATGGGATTGGACTTGCCATTGTTATTCCAGCAATCCAGTCCTTGGTTGCTGACTCCACCATTGATAGC AATCGCGGCACGGCTTTTGGGTGGCTGCAACTTACAGGAAACATGGGAAGCATCATTGGGGGTCTCTTCTCTGTACTCAT AGCCTCAACATCATTTGCTGGTATAGCTGGTTGGAGAATAGCATTTCATCTGGTTGCATTAATCAGTATTGTAGTTGGTA TTTTGGTACGCCTCTTTGCTAATGATCCAAATTTCTCAAAAAGCAATGAAAAAGCTGCACAACAAGCTCCAAACAAGTCC TTTTATTCTGAAATGAAAGGTCTAGTGAAAGAAGCAAAATCAGTAATTGGAATTCCAACATTTCAGATCATTGTGGCTCA GGGAGTGTTTGGATCATTCCCCTGGTCAGGCTTGTCATTTGCCACTCTTTGGTTAGAGTTAAAAGGCTTTTCCCATGTCA CAACAGCAGTCCTTTGGACACTGTTTATAGTTTCTGCTTCATTTGGAGCTTTGTTTGGAGGATGGATGGGTGATTTTTTA TCCCTAAGGTTACCAAACACTGGAAGAATAATGCTGTCACAAATAAGTGCTGGTTCAGCCATTCCTTTAGCTGCAATTTT GTTGTTGGCATTGCCTGATGATCCATCCACAGCCTTCTTGCATGGTCTGGCTTTCGTCATCTTTGGATTCTGTACAGCTT GGAATGCTCCAGCAACTAACAAGTATGTGTATATATGA
CDS sequence (LotjaGi4g1v0398200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAAGAGACAGTGACACTGGTTCTGGTGAATCTAGCAAGCATTATGCAGAGAGCTGATGAGTCACTGCTACCAGG AGTTTACAAAGAGGTTGGTGCTGCTCTCAACGCTGATCCCTCTGCCTTAGGTTCACTCACTCTGTTTCGATCTCTGGTTC AGTCTCTTTGTTATCCACTTGCTGCATACTTCGCCACCCGACACAACCGTGCACATGTCATTGCTCTTGGTGCTTTTCTC TGGGCAGCTGCAACATTCCTCGTTGGCATCTCCTCCACCTTCTTACAGGTGGCAATTTCAAGAGGCTTAAATGGGATTGG ACTTGCCATTGTTATTCCAGCAATCCAGTCCTTGGTTGCTGACTCCACCATTGATAGCAATCGCGGCACGGCTTTTGGGT GGCTGCAACTTACAGGAAACATGGGAAGCATCATTGGGGGTCTCTTCTCTGTACTCATAGCCTCAACATCATTTGCTGGT ATAGCTGGTTGGAGAATAGCATTTCATCTGGTTGCATTAATCAGTATTGTAGTTGGTATTTTGGTACGCCTCTTTGCTAA TGATCCAAATTTCTCAAAAAGCAATGAAAAAGCTGCACAACAAGCTCCAAACAAGTCCTTTTATTCTGAAATGAAAGGTC TAGTGAAAGAAGCAAAATCAGTAATTGGAATTCCAACATTTCAGATCATTGTGGCTCAGGGAGTGTTTGGATCATTCCCC TGGTCAGGCTTGTCATTTGCCACTCTTTGGTTAGAGTTAAAAGGCTTTTCCCATGTCACAACAGCAGTCCTTTGGACACT GTTTATAGTTTCTGCTTCATTTGGAGCTTTGTTTGGAGGATGGATGGGTGATTTTTTATCCCTAAGGTTACCAAACACTG GAAGAATAATGCTGTCACAAATAAGTGCTGGTTCAGCCATTCCTTTAGCTGCAATTTTGTTGTTGGCATTGCCTGATGAT CCATCCACAGCCTTCTTGCATGGTCTGGCTTTCGTCATCTTTGGATTCTGTACAGCTTGGAATGCTCCAGCAACTAACAA GTATGTGTATATATGA
Protein sequence (LotjaGi4g1v0398200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQETVTLVLVNLASIMQRADESLLPGVYKEVGAALNADPSALGSLTLFRSLVQSLCYPLAAYFATRHNRAHVIALGAFL WAAATFLVGISSTFLQVAISRGLNGIGLAIVIPAIQSLVADSTIDSNRGTAFGWLQLTGNMGSIIGGLFSVLIASTSFAG IAGWRIAFHLVALISIVVGILVRLFANDPNFSKSNEKAAQQAPNKSFYSEMKGLVKEAKSVIGIPTFQIIVAQGVFGSFP WSGLSFATLWLELKGFSHVTTAVLWTLFIVSASFGALFGGWMGDFLSLRLPNTGRIMLSQISAGSAIPLAAILLLALPDD PSTAFLHGLAFVIFGFCTAWNAPATNKYVYI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| Gene3D | 2 | 350 | 349 | 5.7E-35 | – | |
| PANTHER | 2 | 349 | 348 | 1.1E-181 | – | |
| PANTHER | 2 | 349 | 348 | 1.1E-181 | – | |
| SUPERFAMILY | 6 | 348 | 343 | 1.44E-39 | ||
| ProSiteProfiles | 7 | 351 | 345 | 21.054 | ||
| CDD | 8 | 351 | 344 | 2.83795E-56 | – | |
| Pfam | 13 | 346 | 334 | 8.7E-33 | ||
| Phobius | 48 | 66 | 19 | - | – | |
| Phobius | 67 | 72 | 6 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 100 | 5 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 132 | 154 | 23 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| TMHMM | 164 | 186 | 23 | - | – | |
| Phobius | 166 | 186 | 21 | - | – | |
| Phobius | 187 | 220 | 34 | - | – | |
| Phobius | 221 | 242 | 22 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 243 | 261 | 19 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Phobius | 262 | 286 | 25 | - | – | |
| Phobius | 287 | 297 | 11 | - | – | |
| TMHMM | 296 | 318 | 23 | - | – | |
| Phobius | 298 | 318 | 21 | - | – | |
| Phobius | 319 | 323 | 5 | - | – | |
| TMHMM | 323 | 345 | 23 | - | – | |
| Phobius | 324 | 342 | 19 | - | – | |
| Phobius | 343 | 351 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0398200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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