Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0400600 |
| Transcript ID | LotjaGi4g1v0400600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT4G39710.1 FK506-binding protein 16-2; Swiss-Prot: sp|Q9SCY3|PNSL4_ARATH Photosynthetic NDH subunit of lumenal location 4, chloroplastic; TrEMBL-Plants: tr|I3T1B8|I3T1B8_LOTJA Peptidylprolyl isomerase; Found in the gene: LotjaGi4g1v0400600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77815121..77819520) extracted from Lotus japonicus Gifu genome v1.2.
CCATTACACCTACTAATCAATCAGGAAATTTGTGAAATCGGAATCACAAAAAATTTATTGGAGTATTGCATTTGCTGTTT ACAGTGTACAACATATCATAGGAAAATTCACATTTCATTATGAATGCAGAATGCACAAACTAACAAGAACAAAGCAATTA TACTAAAATATGCAAGAAAAGAACTAAACAACAAATGTGACCAAGTTTCACTTCAGCAGAGAAAGAAGTGGACCGTCTTC ATCATGATCAGAATCACATTCACAGGCCATGGTGGTCTTCAATCTCCACCATTGGTTTCACCTGAGGCATGGGTGATACA GCAGCAGCAGCGACGCCGCCACAACCAGCGCAGGCCCCTTCCATCGCCTGACCAACAGAATCTGGAATATCATCAGCCAT TCCTTCCGCCGCTGCTCCTCCACCGGCGCCTAAGAAAGTATCATAAGCCGCTGCCACGGGATTAATGTGCGGAAACGGCA AGTACACGCTGTGCACCACAATCTTGATGTTGCGCATGACATCCGGCACCTTCACCCTCACATAGTTAATCCTCATCGGC GCCGACGTAGCTCCTCCGCCGGAGGTTGTGATGAGCAGCGGTTGGCCTCTTTCCAATGTCGGCAGAGCAGTCCCTACATG AAGCTTCTCCAGATCTGCAATCGTCAAGTAACGGTTCGGCACGATGTGGAACCTGACATTGCTGATGTACGAGTGTGAAC CGGAGAAGATGGAAAGATCGTCGACGGCGAACACCGTCATGTTGCTGAGAGTCACGAGCTCTGCGTACTTGACCTTCATC GCGAGTGCGAGGATGCTGAATCCGTTGTTACGGAGCCTGAGCATGGCGTCTTTGAGCATGAGACGCATGAATGTAGGCTG CATCGGAGGAGCGCCGTGAGTGTGGTGGAGATGATGACCGGAACGGTGATCTGGATGGTACGGGAAGGAGAGCGAGGTCA TCCTCTCGACATCGCAAGAGAACGGAGACAGCGGAGAAACGAAGCCTTGAAGGCCATGAACCACGACCATGCCGTTGTTG AACAGATCCGGCTGCGTGATCTCCACGCCTCCGATGAAGACCTTCGGAGCGACGGCGGCGCTGGTGTTGTGATTGACCGA TTCGGCGGTAACGGTGATGCATCGTCCCGGACTCAAGGTCTCGATCTTGGTGCCAAAAGAAAGTTTCCTCAGATAATCGA TGGGGAAGAGACCTGGAACGATGTGCTCGCGGAGGAGATTAGGCACGGAGCAAGAAAAGCAAGTCCGGAGCGAGGAATCC GACGGAGCGAAGATAGTGGAAGGACCATTCCAGGCAGAGGAAGCTGCAGTTACAGTTGCAGCAGCGTCAGAGAGCGACGG CGCCGCCGTCGCAAGGTCGTGGAAACCGAGATGTGACAAGATCGGAGGAAGAAGCGCAGTGTGGGAGAAGAACGAGTGTT CTTGAAGATCGTGCGGAGGAGGCGGTGGCGTTGAATGAGCGAAAGCAGCTTCCATTCCTTCAGTGGCGGTGACCTTGGGG CAGCAGAGCACGGCGGCGAAGAAGACGGTGCAGAACAAAGCGAATCGAACTGAGAAATTTTCCATTGCGGAAACAGAGAA AATCAGATTCAAGAGTGAATGCGGTTGCGAAATGAAGCGAGTGAAGAGTTGCAGGGTATTTATGTGTGTATGTAAAGCAC GCGCCAGTGAGAGAGCGAGGGAAAGAAACGGTTATGAGAACGGTGAAGGCGGTTATTGGAATCTTGGAAAGCGCGCTTGT TAGTTAGATTTGAAACTGATTCAGTTAGAGGCGTTGAGTCACGCGTTCCTCGCCGGTGAATGGAAAATAAAAGGAGGGAA AACTTTTATTTATTTATGAGATTAAAAAAAAGAAATAAGAAATTAAAGGAGAAAAGATATTTTATATTTATTTAAAAAAT GAAACGTTATCCTTCGAGAGCCATACGAAGAAGAGAGAAACAGATAGGTGAAGAAGAAGAAGAAGAAGAAAATGGCACTC TCACTCTCCTCTTGTTTAACAGTTCCTAATCGTTCTTCTTCTTCTTGTGTTCGGAATTGCAAGGTGAAGAGTAAGGTGGT GTGTTGTTCGGCGCGTGGCGGGAACGATAGGAATCGAATTTGGGGGATTGGGGTTGGGGTTGTGGCGGCTTGTGTGGTGG GTTTAACGGCGTTGGAGGCGGATGCGACGAGGATAGAGTACTACGCCACCGTGGGAGAGCCGTTGTGTGAGCTTAATTAC GTGAAGTCTGGCCTCGGTTACTGCGATATTGTTGAGGGTTTCGGTGATGAAGCTCCTCGCGCGGAGCTTATCAATGTCAC TGAGTCTCACTCACTCAATTTCTATATGATGAACAGTTTACTTTGTTGATTACTCATTGTTTGTCTCTGAATGATTGATG TATACGTACACTGCAGGTTCACTACACTGCAAGATTTGGCGATGGGACAGTGTTTGATAGCACCTATAAACGTGGAAGAC CTCTCACCATGCGCATTGGTGTTGGCAAGGTAAATAAGTTCTCCTCTCCTCACTGTTAAATTGTTTGTAAATTGAATTGT TGCATACTTTTCCTGAGAGTTTGTCAAATTCAGGTAATCAGGGGACTGGATCAGGGGATTTTTGGGGGAGATGGAGTAAC TCCAATGCGAATAGGTATCGAATTTAATCGATGCGTTTAAGTTTCTTAGGTATCGAATTTAATTGATACGTTTAAGTTTC TTAGGTCACGGTGGTTAATGTTATTTGCTAATTAATCTACCATTTTGACCCAGGTGGGAAACGCAAACTGAAGATTCCTC CAATGTTAGCATATGGCCCTGAACCTGCAGGCTGCTTCTCAGGTTTCATTTGAGCTTTAATTGCAGCAATTACCTAATTT GTTCATAAACATGGAAAATTCCCTTTTAGCTTAACCTGCAACTGAGATCATTATTCATTGGCTAGTTGTGCATTTAGTAT AGCATATTTGTGTGTGCTTTTACCTCCAATGAAAACTAAGGCCATTGTTTTGATTTTTATAAAATTCATGCCTGCTTGTT TTAGGATATGCTACCGCAGATAGAGTGTATGATAATTATCAGAAGATGAAGCGAGTTGTTAAATATGTTAGATTCTGACA TTTTTGTTACTGATTCAATAGGTGATTGTAATATACCGGGCAATGCCACTCTTCTGTATGATATTAATTTTGTTGGAATT TATAACGGCAATGCAAAGTGAAGGAAGCCGAAATTGATCTGATGTATATATGCGTATGAACCACACTGGATCAAGTGAGT TTCCTGGTCTCCTGAGAATAAATACCTAGATTAGATTGTTGAAATGGTACCCAAGCACACAGATTGCTGTGTGCAGCTTA TTTTCTATGTGCACGGCACCTAAACATGTTGCTTTTATGTCCATGTTATCAAAATAGTAGCCATCACCTTCCAATCTTGC TCATATAACAAGCTTGTATGCATTTGTAGGTGTATGCAGCACCTTCATGATTTAACATTGATCAACTGCTTTAGTGGTTT AACTAGTTGGTTTTGATTACATCTAACAAGCAACATTAAAATTAGCTGACCCTAGTGATCATAGTTAAAGCATAGGCTGC TTTATATTTCTCCTCTTGTAAAATACAGGGTTGTTTGTGAAATTTACATCACCCTGCCGAGTGATTTTATGATAAATATG TTGTTTGTTTGCTGTGTAATCGATCTTGTAGCAAGTAGTGTCAGGTAGATATAGACCCATATTTATGAACTAATATATCT TCCTAAGGTATAGAGGAAAAAAACCCTTAAAACTATAAATGACATTCTGGTATGCTTTCTTTGCTTCTCCATGTATAATT ACAATTTCCAGTAGCTTAGAGCAATGAACTTGACTTTTTTACTAGTGAATGTGGATCAACTTGTTTGGCAGAATCTCCTC CCTGAGTCCAGCTATCTCAAGTTACTGTTCCTGGTTAGTACAGTTGGACATGATTGACCTGAATACCTTTTGAGAGCAAA AGGAACTATTTCTGGTGTAGTGATATAGACTAGACAAATCAGGTGTATCTCTCTGCACACGGCATGCAATGTAATTTTTG TATCTTTAGTGTAAAAGTAATTTTCAATTATGCTCTCTAATGATGAATCCAATAATTCTTAGTATGATAAATGTCATTGT CATCCCTATTGCTTTATATGCTTTACCCTTTTGAATATGATCTTGTTCTGTATATGCTCAGAATAATGAAATGCATTGGG AGAATCGTAGTTTCAAATTATTTACTAAACTAGTTAAAAATATTCAAAGATAGTTAGCCTTGATTAAGTTTTCTTTGAGT TTAATTCATCTAAAATTGGAAATATTTTCCTAAAGATATCCTCAATTGTAATTCTCTGAAAAACAAATTTTGCACACTTG
CDS sequence (LotjaGi4g1v0400600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTCTCACTCTCCTCTTGTTTAACAGTTCCTAATCGTTCTTCTTCTTCTTGTGTTCGGAATTGCAAGGTGAAGAG TAAGGTGGTGTGTTGTTCGGCGCGTGGCGGGAACGATAGGAATCGAATTTGGGGGATTGGGGTTGGGGTTGTGGCGGCTT GTGTGGTGGGTTTAACGGCGTTGGAGGCGGATGCGACGAGGATAGAGTACTACGCCACCGTGGGAGAGCCGTTGTGTGAG CTTAATTACGTGAAGTCTGGCCTCGGTTACTGCGATATTGTTGAGGGTTTCGGTGATGAAGCTCCTCGCGCGGAGCTTAT CAATGTTCACTACACTGCAAGATTTGGCGATGGGACAGTGTTTGATAGCACCTATAAACGTGGAAGACCTCTCACCATGC GCATTGGTGTTGGCAAGGTAATCAGGGGACTGGATCAGGGGATTTTTGGGGGAGATGGAGTAACTCCAATGCGAATAGGT GGGAAACGCAAACTGAAGATTCCTCCAATGTTAGCATATGGCCCTGAACCTGCAGGCTGCTTCTCAGGTGATTGTAATAT ACCGGGCAATGCCACTCTTCTGTATGATATTAATTTTGTTGGAATTTATAACGGCAATGCAAAGTGA
Protein sequence (LotjaGi4g1v0400600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALSLSSCLTVPNRSSSSCVRNCKVKSKVVCCSARGGNDRNRIWGIGVGVVAACVVGLTALEADATRIEYYATVGEPLCE LNYVKSGLGYCDIVEGFGDEAPRAELINVHYTARFGDGTVFDSTYKRGRPLTMRIGVGKVIRGLDQGIFGGDGVTPMRIG GKRKLKIPPMLAYGPEPAGCFSGDCNIPGNATLLYDINFVGIYNGNAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| Phobius | 12 | 19 | 8 | - | – | |
| PANTHER | 15 | 208 | 194 | 2.3E-105 | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| Phobius | 43 | 61 | 19 | - | – | |
| Phobius | 62 | 208 | 147 | - | – | |
| Gene3D | 78 | 202 | 125 | 9.7E-37 | – | |
| SUPERFAMILY | 83 | 202 | 120 | 1.79E-32 | – | |
| Pfam | 101 | 198 | 98 | 3.7E-23 | ||
| ProSiteProfiles | 104 | 203 | 100 | 23.996 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi4g1v0400600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…