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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0402500 |
| Transcript ID | LotjaGi4g1v0402500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Early light-induced protein 2, chloroplastic; TAIR: AT2G21970.1 stress enhanced protein 2; Swiss-Prot: sp|Q9SJ02|STEP2_ARATH Stress enhanced protein 2, chloroplastic; TrEMBL-Plants: tr|I1KT92|I1KT92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0402500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77964418..77968915) extracted from Lotus japonicus Gifu genome v1.2.
GTTATTTAACCCAAATTTCAACATGGGTCATTTAGACAACCCCTTTATTTATATATGATCCTCTTGAGTGCTACGTATCC AATGTATCTCCCACACCCCGCGCTTTCCTAGAACAACACTCACCGGTGTCGACAACTGAAAACAACGTTACCGAACATAG CACTAGACACGTAGTAGTAACCACCGTGTCCGTGTCCCACACCCTTGTACCTTCTTCAACTCTTCCCTCTCCATCAAACA CTTTCTCTCCTCTCCATTCTCAATCTCCCAAATCTCTCTCTCATGGCATCAGTTTCGCGTGTTGCGCACTGCAACCTCCG GCAGGCAAAACCCGCGGCGGCTCGACCGAGAAACCAGCCCGGTCCGGTTCAGCTCTCGATCCCCCGGGCCAAACCGGTGG AATCCGATCAAACCGGAAACTCAAACATCGTCCTGCAACCGCGCCTCTGCACTCTCAGATCCTACGGTCCCGATCGAGTC ATCAACAAGAACGCCATCAACCTCGCCGATGACGTGTCACCGTTCTTCGCCACGCTCTCCGACTACATCGAAAGCTCCAA GAAGAGCCAGGATTTCGAAATCATCTCCGGTCGACTCGCCATGGTAACCGCCAAAACCATAAATCAATTTTTTTAGTTTT ATTTTTATTTTTGGTGATGTTTTGATTGAGTGATTTTGTTGGATTTGGCGCGCAGATGGTGTTTGCGGCGACGGTGACGG TGGAGATCGTGACGGGGAGCTCGGTGTTTAGGAAGATGGACGTGGCGGGGATTGCGGAGGCCGGTGGGGTGTGTTTGGCT GCGGTGACTCTGGCGGCGGTTTTTGCTTGGTTTTCGAGTGCCCGAAACAGAGTTGGTAGCATCTTCAATTTGAGCTACAA TGCCTTCATTGATTCCCTCATTGACCAAATCGTTGATGGTTTGTTCTATGAAAGTGAACCTAGTGATTGGTCTGATGAAC TCTGAAGTGAAGCCAATGCCATTGCTAATGTTCGGAAATCTTTCTATAATTGATTTTAAAGTCGTGATCAACTATGTGGA AGGTTATGTGTGTAGCTTCCGACTCGAGATTCGAGATTCTGAGGAAATAGAAGCTGATCTAGATATGCTATATGTATTAG AAGAAAATTAGATACACTTAGGGGGGATGTGAGTGAAGTGAAAAGTCTATTGTATATGGAAGTTGAATATTTGAGAGTTG AAACAAACTTGGGTCATCCATTTGTATGAACAAGAAGAAGATCCAATGTTGTAATTTTTATATAAGACATTGTATTGTAT GTCATGGCTTAAAGCAGTTTAATATTTAATGTTGAACTCTGCTGCAACACTTTCGATTGTTTGAATGCACTCCACTACAC TTGCCTTCTTTGTCATTGATGCCATCAAGGCTTCATGACTCTCCTTGTTATTTTTCAAGAGACTAGCAGCAAACATAACC TGCAAGCATAGCAAAAAAAAAATGAATAAACTTGGGGATGCATGGTTTCCTGGTACAAATCAAACTGTTCAATGAGTGCT ATTTTGGGCATGGCTTTGTGTTAGAAGAACATACTGCCCATCTAGTCAGATTTTGTTGCTGATCTTTGCTGAGTTGAGGC TTGGTTCTGTTTATAAATCTCTGCAGGAAAAGAAAAAAAGTTATGAGATGATATTGCTGAGTAGTATAATATCAACACCT TACAAAAATTGAGAGGGCTGTGTCAGTGCTACCCTTTTATTGTCACTGAAATGAAAAATTCAAAACATGACATATATTAT GGAGAGTGAAAAGTTTTCCAAATAGAGATCTCAAACCTGGAGAGTGAAAAGATCAGCTGATTGACCAATCACCTTGTCAT ATATTAAACCTTCTGCTGCCAGTCCAGCCATTGACACAACAGCCAATCTAAAAAAGAGGCAATGAGTAACAACTTTACCT AGTTCTACACAAAAGTATTGTAGTTGCAAACGCATGTTTCTTTTACAAATCATGTTTTGGGTCAGCTCCTCTTTCATTAG AATCAATTCTGATATCTAGAAGCTACTTACCGGTCTGAATTGTTTTTGACACCGAAGAAGTACATGGTTCTTTAAAAAGT ATTTGTTGTCATCATGGCTTTTTTCTTCCACATTGAATAAAACTAATGAAAGTTGTCTGGTGAATACCTATCTATCTCTT TAGCATCAAGCTGGCCACTATAGATAAGCTTTTCAAGCCTCTGATCAATGAGATTGACATGCTCTTTCCCAATATCCAGC GAATACCCCAAAATGGGTACACCAAGCAGATAAGCAACTAAAATGCACAAATAAACCAAACAGAAGCTGAGCTAGAGTAC ATGAAAAGTCACAACTGATATGTAAATGTAAATCAGCCAAAAAAAGGGCAGTACTCAAAAAGTGTGCTGCTTCATGTCTA GCAATCCTCTCTTGATAATCAGGAAAAACTGTTGAAAAGCTGCCAATAGCTGCTTGGAGAAGCCTACATGCATATGTTAA AATTAATGCTAAATCAAACACTAAAGCTACTCACAGAAGCTTCCCTAAAATTGATTTTGACTTCATAATCAATTGTAGAA GAGTTTCCAAACATACACTTACCCAGGGGATATGCTACCCACAGCTAAAACCACTAGGGATATACTTCCAATCAAGTATG GTACAAAAAAGCCCCAATCCTACATGAGTCAGCAAGCATTAATCAGAATTAACAGGCAAATATAAAAAACAGGTAAATTA TTATCACCAAATCTTTTTCCCACTTTCTATTTGTTGTTTCAATTTAGCTATAAGAAGCAAATGTTAAAGGACTTCTATTC CAAATTTTTCACTTTCTACTACTCAACCAAGCATGGCCTTAAGCTTCTATCTAATACATAAAAGTCATAATCTGAATGCA TGAGTTTGCCAACTTAGAAGAGGAGACAATTCTAAACAACTAAATAAACACAGAATCCTGATATGTAGAAAAGGAAAGAA TTGCTAAATCAACCACTGTGGCTGCTCTTTGATAACCAAGACAGAAATTATAATCCATAAAACAATACATCCTACATGAA ACTCCAATCATATTGCGTTTCCTCAATAATTCATATTAGTAATGCAGGAACAAATTACAAGTCTATAAACCAAATGGAAT GCCATATCCGCATTTACAAAAAAAGCCTTTTAGCACGTTTGGAAGTCCTTCTGCAATTGATTCTAAAACCAAAATCAATT CTGAGAAGAACCTTTGGGTATCAAAATTGATTATGAGGGAAAATAAACTGATCTAAAATCGAAGTTAAACAGACATACAT AGCAAGATAGAAGTGTGCAAGGGATACCCTACCCCGGGAAGCTGACCAGTCAGAATACCCAAAAATCCAGTTGTTCCAAC AACAGTAAAGAGAAAAGCTGCCTGCACCATCAAAGATTAATGTTACTTGTTGGACTTGGAACAAACTCATTTTTCTAGAA TTCTTACAAGAAAATTCAAATGTTAAGTTCTCAATAATCAAGATTTAAGAGATTTACAAATTGCAGACTAAAAAGTACTA CTCATTCCACAAGATACACAAATAAGATAAAAATTCTGAAACTCACATCATTTCTGACACTAGGAATTGCAAGGTTCTCA GCATTTTTAATTCCCAGAGTTGTCAGCTCTCTAAGTGATGTCTGGTAGCACAAATTTTGAAAGGTCAAAATTTATATGTA TGATGAAGCTTACACATTGAATTAAATACTGGAACTGGAAGCACTGAACAAGTATACATGATGCTATAGCTATGTCCAAG AATGCTATAGTTGGTGGCACTTCCCCAGAACTTCACAGTTGATAATGGACACTGACCGTACGACGTGAAACATATGGCTG TGAACCCCATTTCTTGGCCCAACCACCTTCACTCAGCTGATCAAGTGCTTCTTTAACAGCATTGCTATCTTTCTGTTCAA AAATATTCATACAACTCTAAGTTAAATCACTAGATTGTGAATACTCTAATGGGGTCATAGGTAAGAGGCCAAAGAATCTA ACTTTAAGTCAATTTTCAGAAATCTCCATTGTTCTTAAGCACAACATCATATCTTATTGACATGGATTCAAAGAAGAAAT ATTTTGCTGCTCAATTACATTATTCAGCTGATAACAAGTTCATGTTTATAAAAAAATTACAACTTCTAAGTGTCAAAAAT GATTTTTAGGAAAAAGAAGCTAATCCAATCATGTTATGTCCTTAGTATGAAAAGCAGGAACAACAAATTGGTGCTAAAAC CTTGGCAATGGCAGATTCAAGAGTGTTGAGTTCAACACCAGGGGCAGCAGAGGAAGCTCTAGTGGTCCATTTGGGGAGGT TGATCTTGAAGCATCTTTGATGGTGATAATGGAAGTTCTGGGAGTAGCATGGTTTGGGCAGGGATAATGAGTAAGCCATG TTTGTTACCCAGATTATCCTTGCTATCTGTTTTTTTCTAGTTGTTGTTTGATTATTGGATGCTGGAGCTTGAAGCAGATA AGACTAGATAGGACAAAG
CDS sequence (LotjaGi4g1v0402500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAGTTTCGCGTGTTGCGCACTGCAACCTCCGGCAGGCAAAACCCGCGGCGGCTCGACCGAGAAACCAGCCCGG TCCGGTTCAGCTCTCGATCCCCCGGGCCAAACCGGTGGAATCCGATCAAACCGGAAACTCAAACATCGTCCTGCAACCGC GCCTCTGCACTCTCAGATCCTACGGTCCCGATCGAGTCATCAACAAGAACGCCATCAACCTCGCCGATGACGTGTCACCG TTCTTCGCCACGCTCTCCGACTACATCGAAAGCTCCAAGAAGAGCCAGGATTTCGAAATCATCTCCGGTCGACTCGCCAT GATGGTGTTTGCGGCGACGGTGACGGTGGAGATCGTGACGGGGAGCTCGGTGTTTAGGAAGATGGACGTGGCGGGGATTG CGGAGGCCGGTGGGGTGTGTTTGGCTGCGGTGACTCTGGCGGCGGTTTTTGCTTGGTTTTCGAGTGCCCGAAACAGAGTT GGTAGCATCTTCAATTTGAGCTACAATGCCTTCATTGATTCCCTCATTGACCAAATCGTTGATGGTTTGTTCTATGAAAG TGAACCTAGTGATTGGTCTGATGAACTCTGA
Protein sequence (LotjaGi4g1v0402500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVSRVAHCNLRQAKPAAARPRNQPGPVQLSIPRAKPVESDQTGNSNIVLQPRLCTLRSYGPDRVINKNAINLADDVSP FFATLSDYIESSKKSQDFEIISGRLAMMVFAATVTVEIVTGSSVFRKMDVAGIAEAGGVCLAAVTLAAVFAWFSSARNRV GSIFNLSYNAFIDSLIDQIVDGLFYESEPSDWSDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 104 | 104 | - | – | |
| PANTHER | 1 | 195 | 195 | 2.0E-79 | – | |
| MobiDBLite | 13 | 45 | 33 | - | – | |
| Pfam | 85 | 159 | 75 | 4.0E-5 | ||
| SUPERFAMILY | 90 | 126 | 37 | 9.02E-6 | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 105 | 125 | 21 | - | – | |
| Phobius | 126 | 130 | 5 | - | – | |
| Phobius | 131 | 153 | 23 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 154 | 196 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0402500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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