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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0403200 |
| Transcript ID | LotjaGi4g1v0403200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0403200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78016494..78019576) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCTTCTTTTCTCTCGCGAACACGCTTCACTCGCCTCACCGGCTTCCTCTTCTTCTCCGATCGCCGTCGCCGGCTCCA CCACTCGCCGTCGCTGGTTTCCTACTTCTCTCTCGCGAAAAAGCGAGAGTCAGTCTGCTTCGCCTGGGTTCTGCTTCTGA TCAAGACCGTGAGCACTTCATTATTTCACTATGATGAGGCATAACTGTCGAAGAAGGAGCATAGAGAGCCTCAATCTATC TTCCATTCTCCCGCACGATTTGATCGTTCAAATTCTGTTAAGGTTACCGGTGAGATCTCTCCTCCGTTTCAAATCAGTGT GCAAATCATGGCTGTCTCTGATTTCTGATCCCCAATTCGGTAAATCCCATTTTGACCTAGCTGCTGCACCCACCCACCGA TGTCTTGTTAAAATCAATAATTTTAAATTGGAGTCCCTAGATGTAGATGCATCAGTTCTCGATCAGTCTTCAGAAGTAAA CCTCAAATTTCCATATACTGGTTATGTTATTTTCCATATTCAGATTTTGGGTTCTTGTAGAGGGTTTATAGCTCTAGTCC GTGGGGGTGATGCAATTGTATGGAATCCATCAACCTGTGTCCAAAGAAAAATTGCAGATGACATTGAAATGAAGATTTAT GGACATCTATATGGTTTTGGGTATGACAAGTCAACCGATGACTTCTTGCTCGTTTTTATAGATTTGATTGCTTTCGAGTT TTTTGAGGATGGAACCACTGTAGCTGAGTATCATTCTAGCATTGAAATTTTTTCCTTGAAAACACCTTCCTTGTTTTATC CAGAGCCTATTCCATATGTGAAACCGGAGGGATTTAATAGCAGTTATCTTGGGTTCTTCTTGAATGAGGCCCTGCACTGG TTGGTTACAAATGCTGAAACCTATCTTCATGCAATCATTGCGTATGATTTGGTAGAAAGGAGTTTGTCAGAGATTCCTTT GTCACCGATTTTAGCTGCGAAATTACAACATCAAGTATATTATTTGAGGGTCATGGAGGAATGTCTCAGCCTATGTTACC CTGGTGATGCGACTTCAATGGCTGAGATTTGGATGATGAAAGAATATAAAGTGCAGTCATCTTGGATGGACTAAGTTATT TGTTTTTTCTACTTATAACATTCCCAAATACTCCTTTTGTCCATTATGTTTCACCAAAAATGGTAGAATTTTTGGAACAA ATGGCTTAGACAGATTTGTTATACTTAATGACAAAGGATGGCTGCTTGATCAGTGCACAACTTGGCCCGATTACCCTTTC CATTTTATTTCTTTACCATATTGCAGTATCTATAGAGAGAGTTTACTATCACTTCCTAATGACTCTGAGGAAGAAAGTGG TGACTTTGAGGAAGTAAGTGAAGATGGCCAGCTCATGAGTTCCTTAGAGGAAGGACGTGAAGATGACCAATAGTAACTGA CAATAATAATTAGTGTATGGAATTCTTCAAACTAAGATCCTATAGAATTTATAATTAGGTGACATTCAGTTTAAGCTCAT CTTTTCCAGCAGCCCATGAAGGGTGTAAGAGTGCAGTACACAGTTACGCTTGATGTCCTGGCTTGCCTTCAAATGATGAT ACTTAGCATTTGTAAGACAATGTTATTTATACAATGTTAAATCATCTCGCTGTAGTTAGTACATGCTATTTAGCATCTTT ATCTTTTTCTCTTAAGTTTCAGTTTGTTTCTATTAATGTCTTTTACATGGTTTCCAGGTTCAATCTCTACTTAGTTGTAC TGTAAGGTATTGTGCTGTTACTCATTTTGACTTGAAGTTATGGTGTCAATCTTAATCATCTAGGAGCTAATAGAAGGGAA GGGTTGAAGGAGGTTGTAACTAATCAAGTTATGATATGGATTGATCTCGCATGTGGTCAGTTTAACCCTTAATCATACTG ATGTTCATAAGGCATCTGTCCAGTTTCATGATATCTGTAGATACTTTCATTGCCATAGCCCATTGGAAATGATGGTGCAA ATGTGTAAGGAAGGATTGAATAGTTTTTAGCTTACGCCGAACCTTACCCATTACTTTTTCTTCCTCTGTGTAGATTATAG TTCTCTGCATAAGGTAGCAAACTTTGTTATTTGGATGTTTTATTTTTTTGGTTCCTACTCTGCACTTGATGTGTGTGTGA TTCTATTGCACTCAATGCAGAAGCTCTCATGTCTCTCCAAGCTAAAAGCTTTTCTTTTTGCAGCATCAGACAGACAGGCA TATATATATGCCAACAACAAAAATTGGAGGCATAAGTTGTGATTTTATTCCATTTTTCATAGAACTTGGTGCACTTTAAA AAAGCTATTCCACGATTTACCAACAAAGAAAAAATGTAAATTTATCTATTCAATTCCCATTTTCAAATATCGGACACCGC ACATATAACTCAGTTTTTCTTATATAACATTGAAGACTGTCATATTTTCTCCTCCTTTCTATCTTATAAATTTGATTGTC TAGATAATTTTCATTATTTGTGTCAGAAACTAATCTCAGAGAGTCAAGCTTGAGTGCAATTTCAGCCTTGGGGGTGTTTA TCCTTGTCTGGCCGTCTCGATGAAGTTGCAAAGCTGCAGCAAAAAAAAGGTCCTTGTTATCCAGGGCAAAGAGACAACCT GGATTGAACATGATCATAAAATGAGTGGAACAACTTGGAAGACAAACTGTATTGACTAGGAAAATGCACCCTATGAAGGG TAGTTGCTGCAACAGTAATGATACGAGTGATGAGGATGATCATGCTCCCAAATTATGATTGTTATCTTTACATTCATTAC TTCTTTCATTTCTCTCTCTATGTGTCTACCCTCCGTTAATGTCTATGAATCATATTTTTGTAACGTAATGGTAAATTGGT TGTGAGGTTTTCTTCACATTAACTTCAACTTTTTTTTATTTCATGCATCATGACTCATGAGCTAAGCAACCAAAAGGGTA ATTCCATTTTCTTGGAATATACTTCATGAACTGAGGCAGGGTCAAAGTAACTCATAATACAAGTAAATCATCAATGAGTG TAAACTAAGTAGCGTCAAAGTACGCCAGTCCAAGCTGAAAGGA
CDS sequence (LotjaGi4g1v0403200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGGCATAACTGTCGAAGAAGGAGCATAGAGAGCCTCAATCTATCTTCCATTCTCCCGCACGATTTGATCGTTCA AATTCTGTTAAGGTTACCGGTGAGATCTCTCCTCCGTTTCAAATCAGTGTGCAAATCATGGCTGTCTCTGATTTCTGATC CCCAATTCGGTAAATCCCATTTTGACCTAGCTGCTGCACCCACCCACCGATGTCTTGTTAAAATCAATAATTTTAAATTG GAGTCCCTAGATGTAGATGCATCAGTTCTCGATCAGTCTTCAGAAGTAAACCTCAAATTTCCATATACTGGTTATGTTAT TTTCCATATTCAGATTTTGGGTTCTTGTAGAGGGTTTATAGCTCTAGTCCGTGGGGGTGATGCAATTGTATGGAATCCAT CAACCTGTGTCCAAAGAAAAATTGCAGATGACATTGAAATGAAGATTTATGGACATCTATATGGTTTTGGGTATGACAAG TCAACCGATGACTTCTTGCTCGTTTTTATAGATTTGATTGCTTTCGAGTTTTTTGAGGATGGAACCACTGTAGCTGAGTA TCATTCTAGCATTGAAATTTTTTCCTTGAAAACACCTTCCTTGTTTTATCCAGAGCCTATTCCATATGTGAAACCGGAGG GATTTAATAGCAGTTATCTTGGGTTCTTCTTGAATGAGGCCCTGCACTGGTTGGTTACAAATGCTGAAACCTATCTTCAT GCAATCATTGCGTATGATTTGGTAGAAAGGAGTTTGTCAGAGATTCCTTTGTCACCGATTTTAGCTGCGAAATTACAACA TCAAGTATATTATTTGAGGGTCATGGAGGAATGTCTCAGCCTATGTTACCCTGGTGATGCGACTTCAATGGCTGAGATTT GGATGATGAAAGAATATAAAGTGCAGTCATCTTGGATGGACTAA
Protein sequence (LotjaGi4g1v0403200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRHNCRRRSIESLNLSSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAAPTHRCLVKINNFKL ESLDVDASVLDQSSEVNLKFPYTGYVIFHIQILGSCRGFIALVRGGDAIVWNPSTCVQRKIADDIEMKIYGHLYGFGYDK STDDFLLVFIDLIAFEFFEDGTTVAEYHSSIEIFSLKTPSLFYPEPIPYVKPEGFNSSYLGFFLNEALHWLVTNAETYLH AIIAYDLVERSLSEIPLSPILAAKLQHQVYYLRVMEECLSLCYPGDATSMAEIWMMKEYKVQSSWMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 14 | 60 | 47 | 9.365 | ||
| SUPERFAMILY | 14 | 84 | 71 | 1.44E-15 | ||
| PANTHER | 15 | 306 | 292 | 6.2E-72 | – | |
| PANTHER | 15 | 306 | 292 | 6.2E-72 | – | |
| Gene3D | 18 | 56 | 39 | 1.2E-9 | – | |
| Pfam | 18 | 57 | 40 | 1.5E-8 | ||
| SMART | 20 | 60 | 41 | 4.9E-9 | ||
| TIGRFAM | 115 | 306 | 192 | 2.9E-15 | ||
| Pfam | 223 | 305 | 83 | 1.8E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0403200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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