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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0403900 |
| Transcript ID | LotjaGi4g1v0403900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-3; TAIR: AT5G64813.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q9C5J9|LIIP1_ARATH Small GTPase LIP1; TrEMBL-Plants: tr|V7CQY4|V7CQY4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0403900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78048440..78053465) extracted from Lotus japonicus Gifu genome v1.2.
TAACAAAGACATGACTATACTCAAAATTTATTAAATTGGAGAAAATTATAATTAATTAATCTGATCGTATAATACATTGA CATCACGTGCTCATTGGTCGCGTGCTTGACACGAATGAGTAGCGAGATCTCATCTTCATGTGTTGTGATACAATCTTCAG GCCAGGGTTCCTCTGATCCAAACCATTTTGCACTGCATATCCCAATCAATCTTCATCTCAATCAATCGTGTTTCTCAACT GAGCAAGCATCAGCCTCGCATCAGATCCATCGATTAAGCGGTTGATTCAAATTTCCCAGTGCTTTTCAATTTTCCCCCCT TCGGAGATGTGTCCAAAGGGACTCTGATCTCGGCGCGATTCTCACATGACATGGATTTCGAAACGAAATTCGAGATACCG ATTGTGAAACTTTGTTGCTTGAATCCATTCGACGGAACTTGAATCAGTGAGAAAAGCGTTTTGAGTTTGCATTTGGAGTA GTTTTTGTTGTTAACAGGAAATCATGTTCTGGAGAGACCGTGAGAGGGAGAGTAATAAAGAGCTCAACGGTGGGGTTCTG TGCGGCCAGGTCAGAGTGCTTGTTGTTGGTGACTCAGGTGCATGATTCTTACAACCCTTTGTTGTTGTTCTCAGTGGTTT ACTGTTATGGAAAAAGCTTCTCTGAAATATGATTTTATTTTTCAAGTATGAAACTGATGTATAGTTTTAATTGCTCTAAG GTTGGACATGGAATATGTTTTTACTTATGCATTTTAGAGACCAGCTTAGTTTAATTTTTGATATGATTTTCCTTTGGAAT GGGAAATTCTCTGATTGTGAGGCGTGGGCGAAAATTCGAGTTGATTGAGTGTAGGAAGTTGTACTGTAATGATCTATTAT GATTTTGTGACGGCTACTGAAAAGTAATTTACTATGGTGAAGCCATTATGACACTCTTTCAAGAGTTTTTGTTACTAAAG TTAGCCGTTATATTGTGTGTTATGCGCACGGTTTTACATATTCAATGCAAGTGGTTCAGATGATAGATATTTTCTTTTGG CATGTCTTTTAGAGAATCTATTTATGTTTTTTTTATAGGCAAATGTTAGTTGTTAATTGCTAGTAAATTAGTTCCTTCGC CAGGATTTAAACCCTGACCCTTCACCCTGCAATCCCTTCATTTCCCTTAGCTCACCAAGTGAGCTACCCTTCCACTGCTT TTAAAGGATATACCTCTTATAATGCAAGAGAAATAAGTGTAGGACAATGGTAGAAGTTTCTCAGAAACCTTATGTTTATG TGGTATGATATGCAGTCGACGCTAGTAAGTCCCACAGCAATGTGCCAAATTCTTTAGGCATACTTTTGAGACCTGTGTTG TGACTCTCAAAGTTATTCAGAATCAAGTTTTATAGGATATACATTCAGTGAGTATTCAAGTAAAAGCTATCTATATATAA TGGACTGTGAGGGGAAAATAATCAAAATCTAATGTTGCTTAGTGCTAGTGAGGAACTGAGGATGGAAATTGTTCTTGCAT ATAATGCTACGGTATGCGTTGGAAAATATCCCCCCATATGGTGTCTTCCTGAAGCTTTGGAAAAAGATATAGTTTGTATT TAATGATAGTATGGTGCCAAGTACATTGAAATAACTCTTTGCGGTCTGCTTGATTTCAGGAATCTTTCCTGTTTGATTGT TTCTATTTTATTATTTCAATAATACCACATATTTTTACGTTTTTTCCTATTTCCACCTTTAACAAAATGTTCTTTTCATT ATTTCTTGTATAAATATTGAAAAACATGAAATAAAGTGTAAACAAGGTAGCACTTTTGTAATTAATGAAACAGAAAAAAT TTCTTAAACCAAATAAGCCCCAAAGTTGTTGATCGTCAGGCATAATTGGTGGTACTTTTGAGGTCTAAACTTCATATACC TGGGTGTGCATTAGTCAACTGTAGGTAAATGCTGAAGAAAACAATTTGATTTTTCTGAGCATGTGATTGCTTTCACTGGG CCCCTAATTTATGGTTCTCTCTATATAACGATTTCTCGCAGATATTTTAGTTGCATATATGTGATATTTTCTCATTCTTG CAGGTGTTGGTAAGACTTCTTTAGTTCACCTGATTGTTAAAGGTTCTCCTGTCACTCGCCCTCAACAGACAATTGGTTGT ACAGTTGATGTGAAGGTAGACACTTCCGAATCCCAATTCTGGTTACGCTAGAAAGCACATTTTTTCATTGTTCAAACTCT TCATCAAATCTCCTGTGTTTTTTCTCCAGCACACTACTTATGGAAATTCTGGCAGCTCTTCAAGTAGCATTACAAGTGAT TCTGAGAGAAACTTCTTTGTTGAACTGTGGGATGTATCAGGACACGAACGTTACCAAGATTGCCGGTCTCTGTTTTATTC ACAGATTAATGGTGAGTAATAAAGCTCCTATTGTTTCTGTTTACTAAACTGTGTAGTTGTTATAAATTTGTAAGAAGTGG TTGTGTATATTGAACGCAATATCGAGGAAGTCTACTATGCTGAAGATGATTTCTGATATTTAAACCGTCAGTATGTGTAT CCTTGGTTTCTCTTTTTCAGGCCTTGCATACTCTTAATAGATGAAATTTGTTATGAAAAATTCAGGCTTAATCTTTTAAA TCTACAATAAGAAATGGTACAGGATTGGCTGTCTAAACATCATTTATTTGCATAACTACCCTGATTACCACAATCTTAGA TAGTTTGCATTAATCCTTTAATAGCATTTGGGTTTTCTGGGACTTTTAATTAAAATTAGTGCTCTAATTAATGATGCCTC GAACAGTAAATGCACATTCGAAGGTTGTCTGTCTGATTTTCAAACTTTGAATTCTTGTTTGAACTTCATTTGCAGGTGTA ATTTTTGTTCATGATCTTTCACAGAGAAGAACGAAGACTAGCTTACAGAAGTGGGCAGCTGAGATTTCTGCAACAGGGAC ATTTTCAGCTCCTCTGGGTTCTGGTGGCCCTGGTGGACTTCCTGTTCCATATATTGTCATTGGCAACAAAGCTGATATTG CTGCAAAAGAAGGCATTAGAGGAAGCAGTGGGAATCTTGTTGATGTTGCGCGCCAGTGGGTCGAGAAGCAAGGTTTGCTT CCATCCAGTGAGGAGCTTCCACTGACTGAGAGTTTTCCTGGCAGTGGAGGCCTTATTGCAGTGAGTGTCGCAACTAAAAA TTGGTTTCAGTTTTATAAGCTTGTTTTATTCCACTTTCTATGCTTGAGGTAGTATGCTATCCCCAAGAAAATTAGCATGT TGTATTCAGCTAGATTTGAATCAATCAATGTTAATGCTAATTATTAGGTAGTTTCTTCTACTAGCTAGTATAGTGGCAAA TTGAAATTTTAGGTTGGCTTGTTTTGTGCTTTAAAGGTGGTTGATTAATTTTCCAAATCGAGGGGCTGATAATTAAAATT ATCTTTCTTATAGTAGTTTCTTGAAGCTTGTCAATACATATTTGAGTCACTCATTACAAAAATGAATTTACCCCAGCCAT TGTCCCGTGTGCTGTGCTTTACCAAATGCTGAATTGGAGATGTTATCCTGTCTGGGATTCTTGATTTCTCATTTAGTCAT TCAAAACCTTAAGAATCAGTTTTATGTATGATGTAACTTATCATATGACATATCCATTAAAATTTGATGCATATATTTTT GTATTTTGTTGTATGGTTTCTATGTAATTCATTCTTCTTATGGTAGTTGTGATTTGTGCTGGATGTCTACAGGCTGCAAA AGAAGCAAGGTATGATAAGGAGGGTGTGATGAAATTTTTTCGCATGGTCAGTATGGTCTTTGATATCTTCTTTTTTCTAA AGATCAAAATTATGGGTTTTCATCTAAATTTTCCTGCAACTCTTTTTAGTTGATTAGGAGAAGATATTTCTCAGATGAAC TCCCTGAGCCCGCATGGTCCATTCCTTCAGTTCAGAGACCTGCTCAGCAGCGTATAGATGACAGTTTCATTGAAGATGAT AATCAGTCTTATAATACGCGGAGAAGGTATTTTCTGCCTGTCTTCTAAATCATTTTGGTGCTGGCATGCTGCAGTGCTTT TATCACCCCCACCACGTGTCCCTATCAGGAATTTCTTTGTTTGGAAAACGCTTTCTTGATCACTATTTTTTAGCCTTGGA AACACTTGCATAGATGCAATTTTGTGTTTGGCTCCATTTTGCTACATAGATAGAGTGCATGTTTGGAAAATCATTCTACA ATTGATTCTAAAGCCAGAATCAAATATGAGGAGAAACTTCTGGGTTTCAGAATTGATTCTGAGGAAATAGAAGTTGATCC AAACATGTTGGGAGATTGAATGGTAGCTGTAGCTTGTAGGACTATGCCCCGAATCCTTGGTATCTTGGGGATGAAATAAT TATGAATTAGTTTCAAGTTTCAACATAGTGTATGCATGTTCATTTTTAGCTCATCACAATGTGATTGATTTCTCACAATT TTAAGCTTGTTTCATACCCCTCCTTACAAAGTTTATTGTTTATTGCAGTCTAAGCAGTGATCCTTTCAAGTATAACATGC TTCCTCCCCTTCCAGCTCAACGCAATCTAACTCCACCACCCACGCTCTATCCTCAACAGCCAGTTTCAGTCTCTGAAAAC TACAGTTTCCCAAGATTTTCTTTGTCTGGCTCCTCAGAAATCAGTTCCTCAGCTAGAACAAAGCGCTCAGATATTAATGT CTGAAGATCTTTGTATTTGTTAATTGGTCACTGCTATTACACTGATGTATTCTTGCATGGAAAAAAAGTTATATGTTTGT TTAAATTCTTTGTTCCGCTTGTAACTTTTCCTCTGATTTATGCATTTTTTATTAGTCTTTGTCAGGGGGAGGAGGAGCAA CTTGTTCAGAGTTTAGGGATGATTTAAAATGATACATGCTCGATTCTTTTATATAATCATATCATACCTTTCTTTTCCTG CTATTGAAAATGTCGAAAGTATTATTACACTGAATAAGATGGATTTCTCTAACTCTTAAGTTGCAC
CDS sequence (LotjaGi4g1v0403900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTGGAGAGACCGTGAGAGGGAGAGTAATAAAGAGCTCAACGGTGGGGTTCTGTGCGGCCAGGTCAGAGTGCTTGT TGTTGGTGACTCAGGTGTTGGTAAGACTTCTTTAGTTCACCTGATTGTTAAAGGTTCTCCTGTCACTCGCCCTCAACAGA CAATTGGTTGTACAGTTGATGTGAAGCACACTACTTATGGAAATTCTGGCAGCTCTTCAAGTAGCATTACAAGTGATTCT GAGAGAAACTTCTTTGTTGAACTGTGGGATGTATCAGGACACGAACGTTACCAAGATTGCCGGTCTCTGTTTTATTCACA GATTAATGGTGTAATTTTTGTTCATGATCTTTCACAGAGAAGAACGAAGACTAGCTTACAGAAGTGGGCAGCTGAGATTT CTGCAACAGGGACATTTTCAGCTCCTCTGGGTTCTGGTGGCCCTGGTGGACTTCCTGTTCCATATATTGTCATTGGCAAC AAAGCTGATATTGCTGCAAAAGAAGGCATTAGAGGAAGCAGTGGGAATCTTGTTGATGTTGCGCGCCAGTGGGTCGAGAA GCAAGGTTTGCTTCCATCCAGTGAGGAGCTTCCACTGACTGAGAGTTTTCCTGGCAGTGGAGGCCTTATTGCAGCTGCAA AAGAAGCAAGGTATGATAAGGAGGGTGTGATGAAATTTTTTCGCATGTTGATTAGGAGAAGATATTTCTCAGATGAACTC CCTGAGCCCGCATGGTCCATTCCTTCAGTTCAGAGACCTGCTCAGCAGCGTATAGATGACAGTTTCATTGAAGATGATAA TCAGTCTTATAATACGCGGAGAAGTCTAAGCAGTGATCCTTTCAAGTATAACATGCTTCCTCCCCTTCCAGCTCAACGCA ATCTAACTCCACCACCCACGCTCTATCCTCAACAGCCAGTTTCAGTCTCTGAAAACTACAGTTTCCCAAGATTTTCTTTG TCTGGCTCCTCAGAAATCAGTTCCTCAGCTAGAACAAAGCGCTCAGATATTAATGTCTGA
Protein sequence (LotjaGi4g1v0403900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFWRDRERESNKELNGGVLCGQVRVLVVGDSGVGKTSLVHLIVKGSPVTRPQQTIGCTVDVKHTTYGNSGSSSSSITSDS ERNFFVELWDVSGHERYQDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWAAEISATGTFSAPLGSGGPGGLPVPYIVIGN KADIAAKEGIRGSSGNLVDVARQWVEKQGLLPSSEELPLTESFPGSGGLIAAAKEARYDKEGVMKFFRMLIRRRYFSDEL PEPAWSIPSVQRPAQQRIDDSFIEDDNQSYNTRRSLSSDPFKYNMLPPLPAQRNLTPPPTLYPQQPVSVSENYSFPRFSL SGSSEISSSARTKRSDINV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 11 | 285 | 275 | 12.595 | – | |
| PANTHER | 15 | 336 | 322 | 1.5E-96 | – | |
| PANTHER | 15 | 336 | 322 | 1.5E-96 | – | |
| Gene3D | 20 | 233 | 214 | 1.8E-30 | – | |
| SUPERFAMILY | 22 | 168 | 147 | 3.08E-25 | ||
| PRINTS | 23 | 44 | 22 | 5.3E-13 | – | |
| SMART | 23 | 237 | 215 | 1.4E-7 | – | |
| Pfam | 24 | 176 | 153 | 1.9E-19 | ||
| ProSitePatterns | 25 | 38 | 14 | - | ||
| PRINTS | 77 | 99 | 23 | 5.3E-13 | – | |
| PRINTS | 151 | 164 | 14 | 5.3E-13 | – | |
| MobiDBLite | 261 | 306 | 46 | - | – | |
| MobiDBLite | 319 | 339 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0403900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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