Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0409000 |
| Transcript ID | LotjaGi4g1v0409000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-containing protein; TAIR: AT5G64630.2 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9SXY1|FAS2_ARATH Chromatin assembly factor 1 subunit FAS2; TrEMBL-Plants: tr|I1K4Y3|I1K4Y3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0409000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78518076..78522973) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAAGGCCCTAAGCCCAAAGAATACCCTGTGCGGAAGAGGTAAGGCAGCCCACCTAGTAAAAGGCCCAAGCCCAAAA CCCATGAGATCCTAGTTTTTCCCGCCAATTGAAACACAGAAGCGCGAAAATTCCATTTCCCCTCTCTCTTCGCATTCTTC TCTCAGTAGTGTAAACTCACTCTCTTTCCACTCCAAACCCTAATTGGATCAAACCGAAAAGTCACGAACGCACTCGAGAG AGAAATGAAAGGTGGAACGGTTCAGATAAGCTGGCACGAGGGAAAACCCGTCTTGTCCATCGATTTCCACCCTCCCTCCG CCACTCTCGCCACCGCTGGCGCCGATTTCGACATCAAGGTACCGTACCACTCCGTCGCCTCCGCACTGCTCAATTGATCA TGATTCGATTTGATTTGTTGTCTCATCGTGTTCGCAGTTCTGGACGATTAAACCAGCTGGAGCACAGAAGAAGCAGATAC CTTCAGTTTCCTATGTCAACAACCTTTCTTACCATAGCTCCGCTGTCAATGTCATTCGCTTCTCTCCTTCCGGTAACTGA TTCTCCCATCTTCGCCTGTAAAATGGATCGCGATTTCACACAATGCTCTGTTTGTTGAAGAATTGTTAGTGCACTATGAG GAAATTGTTTAGATCTTTTCTGTAGAAGTTAGATTTTGGTTTTTTGTGTTAACTGGAATGTTGCCACTTGTTCTTCAACA AGAATAGTAGTGATGCTTTGTGTTGCTAAGTTAGAATTTAGTTGGTGATGCTGTGTTGTTAAGACTATAGAGTGATGCTT TGTGTTGTTAACAACTCACTTTTTGAATCTTGCAGGGGAACTGCTAGCTTCTGGTGCTGACGGTACGATCTGGATCTTGA CTGTCACTGTTGAATGTGTTTAACGGTTTTTAGTTTTTAGCTTCAGCTAAAATGAGGGATCGATGTTTTGACATCATATT TTTTTTTTCAGCTGGTGAGATGTTAATATGGAAGTTACATTCTACAGATACTGGTCCGACATGGAAGGTTCTTAAGACGT TACGGTATTGCCTTTGCTTTGATTCATCAATGAGCCTTTACATGCATTGTTATAATTTTAAAGTAATTATCATGTAAAAA AATGGAAGTATAATTGTTAATTGAATCTGAATGTCAAACTTTGATTAATACCATTCATAAAGACCAAGCAGATTTTTAAA TTTTTGTTTTTCACTGTATCAATTTCCTGGTTATTAAAGATTTTTTGTGTGAATTAGATCTCATATGAAGGACATTATGG ACCTCGAGTGGTCTCCGGATGGCGCATATCTCATATCTGGATCAGTTGATAATTGTTGCATCATATGGGATGTTAACAAA GGTAAGAAAGACAACACATAAATGTTCTGGATATGCTACCAATGCGGTAGATGGCAGTTGATATGCTGTGACTATCCCAA TTGACATGCTTGGTTTATATTCTTATATCACTTGATCCATGTGTGTCAGGAACTAACCTTCAGACATTGGATTCCCATGC ACACTATGTTCAGGGGGTTGCTTGGGACCCTCTAGGGAAGTATGTTACTTCTCTTAGTTCTGACCGGACTTGCCGAATTT ACATTAATAAGCCTCATAAATCAAAGGGCATTGAGAAAGCCAATTATGTTTGCCAGCATCTTATTTCCAAGGCAGAACAG CCATTGTTGAAGAATTCTAAGGTTAGCATGTAGGTATCATTCTTATTTATTTTCATCATAGATGGTTGTTACAAAACTGA ACATTAGGCATAATTTTCGTAATGCAGTTGACAAAATATCATCTCTTCCACGATGAGACATTACCATCTTTCTTCAGAAG ATTAGCCTGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGTATGTACTTGACCAGGAGTTAGATCTTTGATTCAG TTAATCTTGCTTTTTGCACTTGTTGATGAGCTTTTGTAACTGCATGTAGAGATTCTTTTAGAATTAGGCTAGTGCTTGAA GCTTTCTTAGTTTATAATTTTTCATTTTACTGGAAAGTGGATCAAGTGGTCAACGCTGATTCAAGTGTTAATTGATGTAG TCTTAGTTGCATTGCATGTCTATCAGTTTCTAATTTTCACCCTTGTTGTTTAGCCTGACATCCATATAATTTAATTGCAA CTTATAGGTTGAATCATATCCATGGAGTTCTTCCTTTGAGGATCTGAATTCCTGTATATTTTCACCCTTGTTGTATAGCT TTTACTATGTGCCTGTTTATAATCGAAAAGCTCATGTATCACTTTACCTATTTCAGGCTCTTACAAAATTAATACTGCCT CTGAAGCTGTCAATGCAGCTTACATATTTTCTAGAAAAGATCTTTCTCGGTGAGTCTTCCTTCTATTTTTATCTTTTTAA GTGCTGAGTAAAGACATTATGCAAATCCAAAGTGCACTTCTAATTTGTGCTATCTTGATGAACTGTTAATTTTCCATCTT GCAAACTAAGCAGTAAATCTGGATTTACTTTCAATTATCCATGTTAAGCTAGTGAATTAAGTTACAAATAAATAGTATGC TTCTGATGTGTTAGGATGTAAAGAGCAGGGAAAACTAGTTAGGGGCTTTTATAGCAGTTAGGGGATGTTATAGTAGTTAG TTAGTACTTAGTAGGCATAAATGCATAGGGAGAAATCAGGTTAGAGAGGATTCAGTCAGTACATTTGATAGTTTGAGAGT GAAAGGAGAGATCCTTTGAGAAAGGGGAAACCTTTAGGGAGAATTATGCTATTCTCCGTTTCTTGCCTACCCATTCTTTT TCTTTATCTATCTTTCATCTTCTTTATCTGAGTTCCTTACTATTGATGTGTTTTACTTTATTATTTCTCCTGGTATGCAG GCCTGCCATACAACTTCCTTGTGCAAACAAACCTGTTGTAGCTGTCCGGTTCTGTCCCATATTTTTCAAACTTCGGGGAA CAGACTCAGGTACATATACCTGATACACTTCTATTTAAGAACGATTACTGTATACATGGTGCTAGGTGGTACTGTTACAA ACTTACAATCGAATTGCCTGAGTGGCATAGGGTCAACTTAAATCTGACACCTCTTACTCTACAATTAGTATTGCTTTCGA TTCTGCCTGTCTTGAAAAGAATGTATTGCTTAACAGATGTAATTCTGATTTTGTTAAGTGCAGATGGGTTATTTAAGCTT CCATATCGCATTGTATTTGCCGTGGCCACTTTGAATTCATTGTATATTTTTGACACTGAGAACACTTCTCCAATAGCTAT ATTAGCTGGTCTTCATTATGCTACAATAACAGATATTACCTGGTAAATTTTTAGTGGCAATGCAAATCCTTTTCTGGTTT GAGAATTAACAGTTGTTTTTAAACGGTTTAACTAGTATTTGTTCATAGGTCACCGGATGCTCGTTATTTGGCATTGTCCT CGCAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGATGAGCTTGGATCACCTTTCTCTTTATCAGGTTAGCAGAAT TCCTTTTTATGCTCTTATATTTTGACTGTTATGAGGTTTTTAATTTCTCTTTTACACTGTTCTAGAAGGAAAGGTCTCCT ACAAGGATAGTACAAGCACCTTGCAGACAGCCAACAATGCTGTCATTATACCATCAGGGAAAGTTGTTACAGTTGAAGCA GAAAGCAGGAAAATGGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAGAATCTGCAGATATCGGTACAGTCATAGC AGAAAGCAGTAAAACTGTAACACAAAATAAGGTGGATGACATGATCATCGAGTCAACTGGGAATGTTAGCACGGTTATAG CAGATAGTAGGAAAAATGAAGCAGAAGCAAAAGCTGATGACATGGTCATTGAGGCAGCTAAGAATTTTGAAAGAGTTGCT GCAGATAGTAGGAAAGATGATGCCAAAGAGAAGGCTGATGACATGGTCATTGAGACAAGTGGGAGTACTGGAACTGCTGT ATTAGACAGTGTAAAAACTGAAGCACAAGAAAAGGCAGAGAAGAATGTATGTAGTTCAGGTAGTGTAAATTTTGGAGAAG ACAAGGAAGAGAAACAGTCAGATAATCCAGGTGGTAAACAATCTGAAGCAGTGGAGAAAGCAGAGAAACTGCAATCGAGT TCAGGGAAACAATTGTCCAATTCAAAGAGTACACCTGTATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCAAT CGATCCATGACTTTCAAATCCTGATAAATTCTTTCCATACTGGCCTGTGTACATCTTTTTTTCTCTGCGGCCTGTATTTT CAACTCACCTCCCCTTCCTTTTTTCTTGTTTGCTTTAACATAATTTTGTAATGTAGATTCCAATTAGTGAGAACAATCAT CATCATGGAGAGTTCTCCATGGACTTGTTATTCTACTACGTATGATATCAAATATTTGAAGGTAAAGTAAGAGCAGAGTG CCGCAGCAATCGAGAGATGAAATTAGAGAACGTATGAGGTGAGACATCACCAAATCCTGGCAAGAAATCAATGTCTTTCT TCACATCCTTTACTGTGATTTGCTGAAAACAAATTTTGTCCATGATCATCGATAAAAGGTTAATTTTATTTGTGTAATGT TTCTTTTTTTTGAAAAACCTTACACTATTGTGTTATCAAACCTAAAACTTTCCTTCCCAGCAGTATTCCAACCATAAAAA ACCGTACATGGAAATTGGCCAAAACATAAAATTGTCATGCGTTTTAATAGTCATGTCAAAATCACTTGAATAGTTGTTTG GATTGAAAGACTCTTGAATATTTCCTCTCGTTTTAGTCTTATTAACTTAAGAGAACTAGAGAATGATGGTTATGTTCCAT GTTAAAAATAAAATGAAT
CDS sequence (LotjaGi4g1v0409000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTGGAACGGTTCAGATAAGCTGGCACGAGGGAAAACCCGTCTTGTCCATCGATTTCCACCCTCCCTCCGCCAC TCTCGCCACCGCTGGCGCCGATTTCGACATCAAGTTCTGGACGATTAAACCAGCTGGAGCACAGAAGAAGCAGATACCTT CAGTTTCCTATGTCAACAACCTTTCTTACCATAGCTCCGCTGTCAATGTCATTCGCTTCTCTCCTTCCGGGGAACTGCTA GCTTCTGGTGCTGACGCTGGTGAGATGTTAATATGGAAGTTACATTCTACAGATACTGGTCCGACATGGAAGGTTCTTAA GACGTTACGATCTCATATGAAGGACATTATGGACCTCGAGTGGTCTCCGGATGGCGCATATCTCATATCTGGATCAGTTG ATAATTGTTGCATCATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGATTCCCATGCACACTATGTTCAGGGG GTTGCTTGGGACCCTCTAGGGAAGTATGTTACTTCTCTTAGTTCTGACCGGACTTGCCGAATTTACATTAATAAGCCTCA TAAATCAAAGGGCATTGAGAAAGCCAATTATGTTTGCCAGCATCTTATTTCCAAGGCAGAACAGCCATTGTTGAAGAATT CTAAGTTGACAAAATATCATCTCTTCCACGATGAGACATTACCATCTTTCTTCAGAAGATTAGCCTGGTCTCCTGATGGT TCATTTCTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTGCCTCTGAAGCTGTCAATGCAGCTTACATATTTTCTAG AAAAGATCTTTCTCGGCCTGCCATACAACTTCCTTGTGCAAACAAACCTGTTGTAGCTGTCCGGTTCTGTCCCATATTTT TCAAACTTCGGGGAACAGACTCAGATGGGTTATTTAAGCTTCCATATCGCATTGTATTTGCCGTGGCCACTTTGAATTCA TTGTATATTTTTGACACTGAGAACACTTCTCCAATAGCTATATTAGCTGGTCTTCATTATGCTACAATAACAGATATTAC CTGGTCACCGGATGCTCGTTATTTGGCATTGTCCTCGCAAGATGGTTTCTGCTCTTTGGTGGAATTTGAAAATGATGAGC TTGGATCACCTTTCTCTTTATCAGAAGGAAAGGTCTCCTACAAGGATAGTACAAGCACCTTGCAGACAGCCAACAATGCT GTCATTATACCATCAGGGAAAGTTGTTACAGTTGAAGCAGAAAGCAGGAAAATGGAAGCAGAAGAGAAAACTGATGACAT GGTCATTGAAGAATCTGCAGATATCGGTACAGTCATAGCAGAAAGCAGTAAAACTGTAACACAAAATAAGGTGGATGACA TGATCATCGAGTCAACTGGGAATGTTAGCACGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGCAAAAGCTGATGAC ATGGTCATTGAGGCAGCTAAGAATTTTGAAAGAGTTGCTGCAGATAGTAGGAAAGATGATGCCAAAGAGAAGGCTGATGA CATGGTCATTGAGACAAGTGGGAGTACTGGAACTGCTGTATTAGACAGTGTAAAAACTGAAGCACAAGAAAAGGCAGAGA AGAATGTATGTAGTTCAGGTAGTGTAAATTTTGGAGAAGACAAGGAAGAGAAACAGTCAGATAATCCAGGTGGTAAACAA TCTGAAGCAGTGGAGAAAGCAGAGAAACTGCAATCGAGTTCAGGGAAACAATTGTCCAATTCAAAGAGTACACCTGTATC AAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCAATCGATCCATGA
Protein sequence (LotjaGi4g1v0409000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGTVQISWHEGKPVLSIDFHPPSATLATAGADFDIKFWTIKPAGAQKKQIPSVSYVNNLSYHSSAVNVIRFSPSGELL ASGADAGEMLIWKLHSTDTGPTWKVLKTLRSHMKDIMDLEWSPDGAYLISGSVDNCCIIWDVNKGTNLQTLDSHAHYVQG VAWDPLGKYVTSLSSDRTCRIYINKPHKSKGIEKANYVCQHLISKAEQPLLKNSKLTKYHLFHDETLPSFFRRLAWSPDG SFLLVPAGSYKINTASEAVNAAYIFSRKDLSRPAIQLPCANKPVVAVRFCPIFFKLRGTDSDGLFKLPYRIVFAVATLNS LYIFDTENTSPIAILAGLHYATITDITWSPDARYLALSSQDGFCSLVEFENDELGSPFSLSEGKVSYKDSTSTLQTANNA VIIPSGKVVTVEAESRKMEAEEKTDDMVIEESADIGTVIAESSKTVTQNKVDDMIIESTGNVSTVIADSRKNEAEAKADD MVIEAAKNFERVAADSRKDDAKEKADDMVIETSGSTGTAVLDSVKTEAQEKAEKNVCSSGSVNFGEDKEEKQSDNPGGKQ SEAVEKAEKLQSSSGKQLSNSKSTPVSNKPAKKRITPIAIDP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 600 | 600 | 4.7E-185 | – | |
| SMART | 2 | 41 | 40 | 0.02 | ||
| Gene3D | 5 | 197 | 193 | 9.2E-41 | ||
| ProSiteProfiles | 9 | 182 | 174 | 28.581 | ||
| SUPERFAMILY | 9 | 366 | 358 | 1.05E-53 | ||
| Pfam | 10 | 40 | 31 | 0.024 | ||
| ProSiteProfiles | 16 | 43 | 28 | 8.737 | ||
| SMART | 54 | 93 | 40 | 5.4E-4 | ||
| ProSiteProfiles | 61 | 102 | 42 | 12.179 | ||
| SMART | 102 | 141 | 40 | 1.4E-9 | ||
| Pfam | 103 | 141 | 39 | 2.3E-8 | ||
| ProSiteProfiles | 109 | 150 | 42 | 15.12 | ||
| PRINTS | 109 | 125 | 17 | 9.5E-5 | ||
| ProSitePatterns | 128 | 142 | 15 | - | ||
| PRINTS | 128 | 142 | 15 | 9.5E-5 | ||
| SMART | 144 | 183 | 40 | 0.0052 | ||
| Pfam | 145 | 182 | 38 | 9.0E-4 | ||
| ProSiteProfiles | 151 | 182 | 32 | 8.971 | ||
| PRINTS | 165 | 182 | 18 | 9.5E-5 | ||
| Gene3D | 198 | 393 | 196 | 7.3E-10 | ||
| SMART | 328 | 368 | 41 | 0.049 | ||
| MobiDBLite | 525 | 602 | 78 | - | – | |
| MobiDBLite | 544 | 566 | 23 | - | – | |
| MobiDBLite | 567 | 590 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0409000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…