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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0409700 |
| Transcript ID | LotjaGi4g1v0409700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT3G19380.1 plant U-box 25; Swiss-Prot: sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25; TrEMBL-Plants: tr|A0A1J7GIN8|A0A1J7GIN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0409700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78580684..78582692) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGAGGAAATATAACTGATCCAAACATTCTATAAGGTGTTTAAAGATCAGAAGGCCTTCCCACTTTCTTTAACTAGT ACTAGATCTTCTTTCTGCCCCCCTATGTCTGTGGGTGTTCCTTTCTGCTTTGTGATCATTGAAAGTTTGCACTTTTGCTC TTTCCTTTTCTCTACTGTCTTGTCAGCAACCAAGAATTGGAGGGTTACCAGAAACTTCCCACCCTGCACTACTCTTTTCA GCTGGCAACATAGAATGTAAGTCCATAACTTTGGTAATTGCTATTTTTGTCACCTATCATTTCCTCTGAATGCAATATTT CTATGTTCCATTTCTCAGTCCTCTTCCCTCCTATTTATCAGAGTCACCTCTTCTAAGCTTCTAGCATCTGGCTCTCTGCA ATTCTGCTTCAGTCTCTCAACTCTCAAGGCCTTAGAAGCCAAAAAGAGGAAATAAAAATTTCTACTTTCATGACATCATC TTTGTAGCTGCCTTAGAAAATGCATGTCTTGTATTGCCCTCAAACTATTTAAGACATCGTATCTTGAAAACCCACTTTGA TTTTCTGTCACTTTGATTTGGTTTTTTGTTCTTTGAAATTTGCAGTTTCTTTCCATGACAGAATCTCAAAACTCCATTCC TTACTTATTCAGATGCCCCATCAGTTTAGACTTGTTCCAAGATCCTGTAACTTTATGCACAGGCCAAACATATGACAGGT CAAATATAGAACAATGGCTGGCTGCTGGAAACCTCACATGCCCAGTCACAATGCAGAAGCTTCATGATCCATTCATTGTT CCGAATCACACACTTCGCCACTTGATTGATCAGTGGCTTCAACTCGGTCCCCAATTTGAACCTGGTAACTCTGCAACTGC AGATGATCCTTTATCTGGTCTGAAACACACCCTTGAATCCCAGGAAAGCAGCTTGGAGAACAAGCTTCAAGCACTTGAGA AAATCAGAGCCCTACCTGATCAGTATTTTTCTTTCAAGAAATCATGTTTCCTCCTATTGGATTTCTTATCACTACTTTTG GAACTAGTTTTTGCAAGAGAAGAAGCTCAAGTATCAAAAAATCATATGGAATTCATAGAGCTAGCTCTTTGTTGTGTCCT AAAATTGCTGCCTCTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGAGCCTAAATTTTCCACATTTCTGCTATTAT TTGAAAAGGGTACTAACCCGATTAAGAATAGCTTGTGTCAACTTATAGAGTCAGCATCATCATCTCAGACAGAAGAGTTA TGTTTTTTTCTTGGAAATTCTCACAAACTAGTGCAAGAGATTGTTCTAGCTGCTCGCCGAAACAGCACGGTTTCTGAGTA TGCAGTTAAAGGCATATCAGCACTATGTTCTTTGCAGTCTAACAGGGAGAGTTTAGTGAGAGGAGGAGTGATAGATGGCA TTATGACATACATTTCATCAGGTTCTGAAATAAGACAGAAGAATTTGGCACCACTTGCAATGGGAATAGTAAAGAAACTT TTGGAAGTAGAAAGTGCTAGAGAGGCATTGGTGAACCACCCAAATGCTATCAAAACTTTGGTCAACATGGTTTTCAGGGT ATCTGATCACGAATGCAGTGAGAGTGCTGTTGAGATACTCTTAATAGTTTGCCATGATTTTGGTAGTGCAAGAGAGGAAG CCATTGGAGCCGGAGTTTTGACTCGGTTACTATTGCTTCTGCAGACTGAGTGCAGTACCACAACAAAATCAAAAGCAGGA ATGCTGCTCAAATTACTCAGATCCAAGTGGACTGAGGACCTAAAGCAGTGGTAGACTGTGAATAATAATAATAATATTCA TCATAATAACAACAATATAAGCATTGTCACAAAATAATAAAAATAAATATTCTTGTTTTGACCAGACTATGGATATGCAA GTGTCTTGTGATTTTGAGGGATCTCATTGTTAATGTGCCACTGTCATATTTTCTCCCATATACCTGTAATCTGTGAACAT TTGAATTTA
CDS sequence (LotjaGi4g1v0409700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAATCTCAAAACTCCATTCCTTACTTATTCAGATGCCCCATCAGTTTAGACTTGTTCCAAGATCCTGTAACTTT ATGCACAGGCCAAACATATGACAGGTCAAATATAGAACAATGGCTGGCTGCTGGAAACCTCACATGCCCAGTCACAATGC AGAAGCTTCATGATCCATTCATTGTTCCGAATCACACACTTCGCCACTTGATTGATCAGTGGCTTCAACTCGGTCCCCAA TTTGAACCTGGTAACTCTGCAACTGCAGATGATCCTTTATCTGGTCTGAAACACACCCTTGAATCCCAGGAAAGCAGCTT GGAGAACAAGCTTCAAGCACTTGAGAAAATCAGAGCCCTACCTGATCAGTATTTTTCTTTCAAGAAATCATGTTTCCTCC TATTGGATTTCTTATCACTACTTTTGGAACTAGTTTTTGCAAGAGAAGAAGCTCAAGTATCAAAAAATCATATGGAATTC ATAGAGCTAGCTCTTTGTTGTGTCCTAAAATTGCTGCCTCTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGAGCC TAAATTTTCCACATTTCTGCTATTATTTGAAAAGGGTACTAACCCGATTAAGAATAGCTTGTGTCAACTTATAGAGTCAG CATCATCATCTCAGACAGAAGAGTTATGTTTTTTTCTTGGAAATTCTCACAAACTAGTGCAAGAGATTGTTCTAGCTGCT CGCCGAAACAGCACGGTTTCTGAGTATGCAGTTAAAGGCATATCAGCACTATGTTCTTTGCAGTCTAACAGGGAGAGTTT AGTGAGAGGAGGAGTGATAGATGGCATTATGACATACATTTCATCAGGTTCTGAAATAAGACAGAAGAATTTGGCACCAC TTGCAATGGGAATAGTAAAGAAACTTTTGGAAGTAGAAAGTGCTAGAGAGGCATTGGTGAACCACCCAAATGCTATCAAA ACTTTGGTCAACATGGTTTTCAGGGTATCTGATCACGAATGCAGTGAGAGTGCTGTTGAGATACTCTTAATAGTTTGCCA TGATTTTGGTAGTGCAAGAGAGGAAGCCATTGGAGCCGGAGTTTTGACTCGGTTACTATTGCTTCTGCAGACTGAGTGCA GTACCACAACAAAATCAAAAGCAGGAATGCTGCTCAAATTACTCAGATCCAAGTGGACTGAGGACCTAAAGCAGTGGTAG
Protein sequence (LotjaGi4g1v0409700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTESQNSIPYLFRCPISLDLFQDPVTLCTGQTYDRSNIEQWLAAGNLTCPVTMQKLHDPFIVPNHTLRHLIDQWLQLGPQ FEPGNSATADDPLSGLKHTLESQESSLENKLQALEKIRALPDQYFSFKKSCFLLLDFLSLLLELVFAREEAQVSKNHMEF IELALCCVLKLLPLGSLEPLNMIKDEPKFSTFLLLFEKGTNPIKNSLCQLIESASSSQTEELCFFLGNSHKLVQEIVLAA RRNSTVSEYAVKGISALCSLQSNRESLVRGGVIDGIMTYISSGSEIRQKNLAPLAMGIVKKLLEVESAREALVNHPNAIK TLVNMVFRVSDHECSESAVEILLIVCHDFGSAREEAIGAGVLTRLLLLLQTECSTTTKSKAGMLLKLLRSKWTEDLKQW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 81 | 81 | 2.6E-25 | ||
| SUPERFAMILY | 5 | 76 | 72 | 4.71E-25 | – | |
| PANTHER | 7 | 396 | 390 | 1.5E-169 | – | |
| ProSiteProfiles | 7 | 81 | 75 | 31.952 | ||
| PANTHER | 7 | 396 | 390 | 1.5E-169 | – | |
| Pfam | 8 | 76 | 69 | 5.2E-17 | ||
| SMART | 11 | 74 | 64 | 4.7E-30 | ||
| CDD | 12 | 54 | 43 | 3.3077E-24 | – | |
| Coils | 97 | 120 | 24 | - | – | |
| SUPERFAMILY | 180 | 388 | 209 | 1.19E-10 | ||
| Gene3D | 201 | 395 | 195 | 2.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0409700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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