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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0409800 |
| Transcript ID | LotjaGi4g1v0409800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT1G43890.1 RAB GTPASE HOMOLOG B18; Swiss-Prot: sp|O23657|RABC1_ARATH Ras-related protein RABC1; TrEMBL-Plants: tr|I3T2F9|I3T2F9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0409800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78572992..78576483) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAAAGCACGTTATCGAGTTTGTGAATGAAAAGTAATAATAATAATAATAATAATAGTAATCTGAAAAAGAAAACAGA TCGCCGATCCGCTAATGTTATTGCATCTTTCTTTTTCTCACAACACTTTTCCTATACGATTTCATTCATCCTCAATTTCC TTTTGGATTTCGCTCATCGGGTACTAATTCTACACGAATCTTATATATTATAATCACGAATCTCTCACTCTCATTATTCC TAGTTAATGATTCCGATAACGTGTTTTTGTTTGTGATTGATTCAGTTGATTGATTGCCATGGATTCGAGTTCTGCCCCGC AAGAATTCGATTATTTGTTCAAGTTATTGATGATTGGTGATTCTGGGGTTGGGAAAAGCAGTCTTCTTCTCTCTTTCACC TCCGATGAATTTCAGGATATGTCCCCCACAATTGGTTCGTTTTTTTTAAATCGTTATTACTTTGTGTTTTGATTTGAATA TCCGAAAAGCCTGGAATTGATTTGATTCAAAGTTGGGCATCATTGATAATTACATTATCATTTAGCAAGTTAACTTTCAT GTTTTATGTCTTCTTTGATTTCTCTTGTAGGTGTTGATTTTAAGGTCAAATATGTCGCCATAGGGGGTAAAAAGCTGAAG CTCGCCATTTGGGATACTGGTATTCACTTGAATTTGTCTATTTATGTTTATATTCTCTTAGGGCCTCGCTTTAGATACGG CAATCTTGGAGGCCTTTTATATTTTATATTGTCAGAATTATTGTGGCCATTGCTTGTATTTGATTGTTTATACTTGTTTA ATAATGCAGCTGGCCAAGAGAGATTTAGAACACTTACAAGCTCTTACTATAGAGGGGCACAAGGAATCATCATGGGCAAG TTTCTATTCTCCTTTTTTTTTTGCCACTCCATCTTCTTAATCATACATTTATTGGATTAGGTCAAATGCCTTGAATTTGT ATGACAGCCTAGACTGGAATATAGTCAATGGATACAACTATAGAAGGCTATTCGGTAATCACATGTCTTGTTAAGTTGGC ACTACTAATGGTGAATTCATGTAAATAAAAAACTTCTTTTGTTTAAGTGAAAGGATAGTAAATGTTTACCGTCTACCCGT TGAAATAGTGGCATATATTTATGCATCATCAGACTTCCCTTTTTTGTTTTAACATACATTGTACATAAAATTGGAAGTTA GTACTCTTTCACTTAAGTTCACTAACATGCATTAGTAATCTTGGGCAATTGCATGCTTAATTGCTTATTTCATCCATAAT TCTAGCTTTTTGTTGCCTCATATAATCGAAGCATGTGGTTACGTGCACATTAATTTGAATCTTACACTTTTTACGTCATT TTCCCGATCTCTGCTAGGAAAATTTGATAACCTGATGATCTTGATTCTCAGAATACCATTTCTATAATTTTTCATATCAA CTTTATTGACTTGGATCATTGTAAGAGTTGAATATTATTCATTTTTCTTGGTAATTTTGCACTGACAGCTGATATAAATA CCAGTTAGTAGATCCTGGAATCATTTGGTTGTTAGTGAATTGCTCTTTCATCCAATTGATCTCTAGTATTCAATGACCAA ACTGGAACTTCCTTATTGGTTGGTTTCACCACCAAAATGGCTGTGGAAATTGGGAGATTTCCCCTCCTACAAGTTGATGT ACCATTGCTTAAGTTTTGGATTAGTGGCTAATCTCCATGCTATTCCTATAACTGATGCAGTTTATGATGTAACCCGACGA GATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGATCTTTATTCAACAAATCAAGACTGCATCAAGATGCT TGTTGGAAACAAAGTAGACAAGGTATCTTCTTGTAAGAAGTATGCATTGTTTGGTTATGGTGTCTTTGGGTGGAGTATAA CACCTGGTTAACTTGGTTTTTTATGGCCTCCATTTGGATATCAGCATATCTCTTCAAACGAGTTAATATCATAGATGTAT GAAGGAATTGGAGAGGTCTTTGATCTACTGTAGTTGTCCTTTGTTTCTTCTGTTTTGTGTTTTTCACATCTGGTTCTACC AGGATTGCTTATCTTCCTTGAAATAGTAATTTAAAAAACTAATGATATGATTAGGGGAAATCAAGAAAGCATATTGAAAA CCAACATAAAGAAGAGGTACTTAAGTATGTACAAATCCTGAATTGCATTGACTCCATTTTGGCGCTCAGTCTTGGAAATC TGACTTCAACTCTTGGGATTTGACTGCTCTAATAGTGCTGTGTTATAATCATTTATTGAGAAGTCAGTGTCAGGAACTTA GGATTTGTTAATCAATGATTACAATGCTGCCCTATAGCCTCTGAAGTGTACCTCACAATTTGGAGGAGCCAGATCCCAAC TTTGAATGTGTCTAGTTAGCTGCATCATCTCAGAGCTTATTACTGATTTTCTTTCTGCATGATACTTTTATGGGTATTTC ATGGACAAGTCCTGAATTGCATGGACTCCATTTTGGCTACTCAGTTTTACAATTCTAGCTTCAACTCTTGAATGTGTCTA CTCAGCTGCATGACATTTGTTTCTTGTTTTGATTCTGCATCATATCAGAGCTTATCACTGATTTTTTTTCCATGCATTTT GTTAGAGGATTTGACATGCAAGTTGGTGATATTTGTTTTTCAGGAGAGTGATAGGGTTGTGAGTAAGAAAGAGGGAATAG ACTTTGCCAGGGAATATGGTTGTCTATTTATCGAATGCAGTGCTAAAACTCGAGTTAACGTACAGCAGTGCTTTGAAGAA CTTGTTTTGAAGGTATGTTGAGTCAATACTAACATAATTTTGGCCAATAATTAGTGTGCTGGGTAGATTTCCTATTTATG CAACCATGCTGCTATCGTATTTTAGAAGGCTATGGTGAATCCTTTTTGAGTGGTGTAAAAGGAGGAAATGTTTAATTGAG AAAATTACCCTGTGCAATCACGATATTATTTTTATATCTTTTATTTCTTTGGGTGTGTGCAGATTTTGGATACACCCAGC CTCTTAGCTGAAGGCTCTAAGGGGGTGAAAAAGAACATTTTTAAGGACAAGCAGCCTCAGGCCGATGCATCCACAAGTAG TTGCTGCTGATTTTTAGAAGCTATTTCACTGCATTTAAAGAGTTAAGATCTTCAAGAGAAGGGGGTTGCCTCCATTTCCA TAATCTGATTTCTAACATATTTCGCTGGTTTTTAGCATCAGAGAAGCCATTTTTTATCTTTCAGGTTCCTGTTTTGTCTT TAATATTAGATGTAATATAATGTTGACGGTTGACTTCGTCTGCATTTTCATGGGACTTCTTGTATGTCTGAGTTACCTTT AACTTACTACGATGACATAGTATGATCCAGATGGCCGCTGCCATTAATGAAATAACGTTGTTCTTGTTTTGTTCTACATA TGTAGACAGGCATTTATTTTTGAGTCGTAGATATCATATGATAGGGTTGAGG
CDS sequence (LotjaGi4g1v0409800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGAGTTCTGCCCCGCAAGAATTCGATTATTTGTTCAAGTTATTGATGATTGGTGATTCTGGGGTTGGGAAAAG CAGTCTTCTTCTCTCTTTCACCTCCGATGAATTTCAGGATATGTCCCCCACAATTGGTGTTGATTTTAAGGTCAAATATG TCGCCATAGGGGGTAAAAAGCTGAAGCTCGCCATTTGGGATACTGCTGGCCAAGAGAGATTTAGAACACTTACAAGCTCT TACTATAGAGGGGCACAAGGAATCATCATGGTTTATGATGTAACCCGACGAGATACATTTACAAATCTTTCTGAAATATG GGCAAAGGAAATAGATCTTTATTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGAGTG ATAGGGTTGTGAGTAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGTCTATTTATCGAATGCAGTGCTAAAACT CGAGTTAACGTACAGCAGTGCTTTGAAGAACTTGTTTTGAAGATTTTGGATACACCCAGCCTCTTAGCTGAAGGCTCTAA GGGGGTGAAAAAGAACATTTTTAAGGACAAGCAGCCTCAGGCCGATGCATCCACAAGTAGTTGCTGCTGA
Protein sequence (LotjaGi4g1v0409800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLKLAIWDTAGQERFRTLTSS YYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKT RVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDKQPQADASTSSCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 3 | 179 | 177 | 0.0024 | – | |
| PANTHER | 6 | 209 | 204 | 7.9E-120 | – | |
| PANTHER | 6 | 209 | 204 | 7.9E-120 | – | |
| Gene3D | 7 | 209 | 203 | 3.3E-64 | – | |
| SUPERFAMILY | 9 | 186 | 178 | 6.64E-58 | ||
| ProSiteProfiles | 9 | 209 | 201 | 33.088 | – | |
| SMART | 11 | 178 | 168 | 1.5E-32 | – | |
| TIGRFAM | 12 | 170 | 159 | 1.6E-30 | ||
| SMART | 14 | 178 | 165 | 1.3E-100 | – | |
| PRINTS | 14 | 35 | 22 | 6.6E-37 | – | |
| CDD | 14 | 175 | 162 | 2.46933E-105 | – | |
| Pfam | 15 | 176 | 162 | 1.4E-56 | ||
| SMART | 16 | 178 | 163 | 5.1E-14 | – | |
| SMART | 19 | 208 | 190 | 3.5E-5 | – | |
| PRINTS | 36 | 52 | 17 | 6.6E-37 | – | |
| PRINTS | 54 | 76 | 23 | 6.6E-37 | – | |
| PRINTS | 118 | 131 | 14 | 6.6E-37 | – | |
| PRINTS | 153 | 175 | 23 | 6.6E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0409800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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