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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0409800 |
Transcript ID | LotjaGi4g1v0409800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras family protein; TAIR: AT1G43890.1 RAB GTPASE HOMOLOG B18; Swiss-Prot: sp|O23657|RABC1_ARATH Ras-related protein RABC1; TrEMBL-Plants: tr|I3T2F9|I3T2F9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0409800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78573276..78576128) extracted from Lotus japonicus Gifu genome v1.2.
GTTGATTGATTGCCATGGATTCGAGTTCTGCCCCGCAAGAATTCGATTATTTGTTCAAGTTATTGATGATTGGTGATTCT GGGGTTGGGAAAAGCAGTCTTCTTCTCTCTTTCACCTCCGATGAATTTCAGGATATGTCCCCCACAATTGGTTCGTTTTT TTTAAATCGTTATTACTTTGTGTTTTGATTTGAATATCCGAAAAGCCTGGAATTGATTTGATTCAAAGTTGGGCATCATT GATAATTACATTATCATTTAGCAAGTTAACTTTCATGTTTTATGTCTTCTTTGATTTCTCTTGTAGGTGTTGATTTTAAG GTCAAATATGTCGCCATAGGGGGTAAAAAGCTGAAGCTCGCCATTTGGGATACTGGTATTCACTTGAATTTGTCTATTTA TGTTTATATTCTCTTAGGGCCTCGCTTTAGATACGGCAATCTTGGAGGCCTTTTATATTTTATATTGTCAGAATTATTGT GGCCATTGCTTGTATTTGATTGTTTATACTTGTTTAATAATGCAGCTGGCCAAGAGAGATTTAGAACACTTACAAGCTCT TACTATAGAGGGGCACAAGGAATCATCATGGGCAAGTTTCTATTCTCCTTTTTTTTTTGCCACTCCATCTTCTTAATCAT ACATTTATTGGATTAGGTCAAATGCCTTGAATTTGTATGACAGCCTAGACTGGAATATAGTCAATGGATACAACTATAGA AGGCTATTCGGTAATCACATGTCTTGTTAAGTTGGCACTACTAATGGTGAATTCATGTAAATAAAAAACTTCTTTTGTTT AAGTGAAAGGATAGTAAATGTTTACCGTCTACCCGTTGAAATAGTGGCATATATTTATGCATCATCAGACTTCCCTTTTT TGTTTTAACATACATTGTACATAAAATTGGAAGTTAGTACTCTTTCACTTAAGTTCACTAACATGCATTAGTAATCTTGG GCAATTGCATGCTTAATTGCTTATTTCATCCATAATTCTAGCTTTTTGTTGCCTCATATAATCGAAGCATGTGGTTACGT GCACATTAATTTGAATCTTACACTTTTTACGTCATTTTCCCGATCTCTGCTAGGAAAATTTGATAACCTGATGATCTTGA TTCTCAGAATACCATTTCTATAATTTTTCATATCAACTTTATTGACTTGGATCATTGTAAGAGTTGAATATTATTCATTT TTCTTGGTAATTTTGCACTGACAGCTGATATAAATACCAGTTAGTAGATCCTGGAATCATTTGGTTGTTAGTGAATTGCT CTTTCATCCAATTGATCTCTAGTATTCAATGACCAAACTGGAACTTCCTTATTGGTTGGTTTCACCACCAAAATGGCTGT GGAAATTGGGAGATTTCCCCTCCTACAAGTTGATGTACCATTGCTTAAGTTTTGGATTAGTGGCTAATCTCCATGCTATT CCTATAACTGATGCAGTTTATGATGTAACCCGACGAGATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGA TCTTTATTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGTATCTTCTTGTAAGAAGTATG CATTGTTTGGTTATGGTGTCTTTGGGTGGAGTATAACACCTGGTTAACTTGGTTTTTTATGGCCTCCATTTGGATATCAG CATATCTCTTCAAACGAGTTAATATCATAGATGTATGAAGGAATTGGAGAGGTCTTTGATCTACTGTAGTTGTCCTTTGT TTCTTCTGTTTTGTGTTTTTCACATCTGGTTCTACCAGGATTGCTTATCTTCCTTGAAATAGTAATTTAAAAAACTAATG ATATGATTAGGGGAAATCAAGAAAGCATATTGAAAACCAACATAAAGAAGAGGTACTTAAGTATGTACAAATCCTGAATT GCATTGACTCCATTTTGGCGCTCAGTCTTGGAAATCTGACTTCAACTCTTGGGATTTGACTGCTCTAATAGTGCTGTGTT ATAATCATTTATTGAGAAGTCAGTGTCAGGAACTTAGGATTTGTTAATCAATGATTACAATGCTGCCCTATAGCCTCTGA AGTGTACCTCACAATTTGGAGGAGCCAGATCCCAACTTTGAATGTGTCTAGTTAGCTGCATCATCTCAGAGCTTATTACT GATTTTCTTTCTGCATGATACTTTTATGGGTATTTCATGGACAAGTCCTGAATTGCATGGACTCCATTTTGGCTACTCAG TTTTACAATTCTAGCTTCAACTCTTGAATGTGTCTACTCAGCTGCATGACATTTGTTTCTTGTTTTGATTCTGCATCATA TCAGAGCTTATCACTGATTTTTTTTCCATGCATTTTGTTAGAGGATTTGACATGCAAGTTGGTGATATTTGTTTTTCAGG AGAGTGATAGGGTTGTGAGTAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGTCTATTTATCGAATGCAGTGCT AAAACTCGAGTTAACGTACAGCAGTGCTTTGAAGAACTTGTTTTGAAGGTATGTTGAGTCAATACTAACATAATTTTGGC CAATAATTAGTGTGCTGGGTAGATTTCCTATTTATGCAACCATGCTGCTATCGTATTTTAGAAGGCTATGGTGAATCCTT TTTGAGTGGTGTAAAAGGAGGAAATGTTTAATTGAGAAAATTACCCTGTGCAATCACGATATTATTTTTATATCTTTTAT TTCTTTGGGTGTGTGCAGATTTTGGATACACCCAGCCTCTTAGCTGAAGGCTCTAAGGGGGTGAAAAAGAACATTTTTAA GGACAAGCAGCCTCAGGCCGATGCATCCACAAGTAGTTGCTGCTGATTTTTAG
CDS sequence (LotjaGi4g1v0409800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGAGTTCTGCCCCGCAAGAATTCGATTATTTGTTCAAGTTATTGATGATTGGTGATTCTGGGGTTGGGAAAAG CAGTCTTCTTCTCTCTTTCACCTCCGATGAATTTCAGGATATGTCCCCCACAATTGGTGTTGATTTTAAGGTCAAATATG TCGCCATAGGGGGTAAAAAGCTGAAGCTCGCCATTTGGGATACTGCTGGCCAAGAGAGATTTAGAACACTTACAAGCTCT TACTATAGAGGGGCACAAGGAATCATCATGGTTTATGATGTAACCCGACGAGATACATTTACAAATCTTTCTGAAATATG GGCAAAGGAAATAGATCTTTATTCAACAAATCAAGACTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGAGTG ATAGGGTTGTGAGTAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGTCTATTTATCGAATGCAGTGCTAAAACT CGAGTTAACGTACAGCAGTGCTTTGAAGAACTTGTTTTGAAGATTTTGGATACACCCAGCCTCTTAGCTGAAGGCTCTAA GGGGGTGAAAAAGAACATTTTTAAGGACAAGCAGCCTCAGGCCGATGCATCCACAAGTAGTTGCTGCTGA
Protein sequence (LotjaGi4g1v0409800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLKLAIWDTAGQERFRTLTSS YYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKESDRVVSKKEGIDFAREYGCLFIECSAKT RVNVQQCFEELVLKILDTPSLLAEGSKGVKKNIFKDKQPQADASTSSCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 3 | 179 | 177 | 0.0024 | – | |
PANTHER | 6 | 209 | 204 | 7.9E-120 | – | |
PANTHER | 6 | 209 | 204 | 7.9E-120 | – | |
Gene3D | 7 | 209 | 203 | 3.3E-64 | – | |
SUPERFAMILY | 9 | 186 | 178 | 6.64E-58 | ||
ProSiteProfiles | 9 | 209 | 201 | 33.088 | – | |
SMART | 11 | 178 | 168 | 1.5E-32 | – | |
TIGRFAM | 12 | 170 | 159 | 1.6E-30 | ||
SMART | 14 | 178 | 165 | 1.3E-100 | – | |
PRINTS | 14 | 35 | 22 | 6.6E-37 | – | |
CDD | 14 | 175 | 162 | 2.46933E-105 | – | |
Pfam | 15 | 176 | 162 | 1.4E-56 | ||
SMART | 16 | 178 | 163 | 5.1E-14 | – | |
SMART | 19 | 208 | 190 | 3.5E-5 | – | |
PRINTS | 36 | 52 | 17 | 6.6E-37 | – | |
PRINTS | 54 | 76 | 23 | 6.6E-37 | – | |
PRINTS | 118 | 131 | 14 | 6.6E-37 | – | |
PRINTS | 153 | 175 | 23 | 6.6E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0409800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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