Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0411100 |
| Transcript ID | LotjaGi4g1v0411100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0411100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78685641..78691025) extracted from Lotus japonicus Gifu genome v1.2.
AACCCAAAATATGAGAATCTTTTTTCAATCGGTTTTATAGCTCACTCAATGTAAAACCCTAGATTTGTGAATTTTCCCCA ATTCAATTCTATCGTGAGAGTGCTTCGAAGCTCTCTTCTCTTGTTCTTCTCCGTCATCTTGAGCTCTATCTGCTGCTGCT GGATGATGAACGAGCAGGGACCAAGGAGCACGGAGGAGGAGAACCCTTCGCTCTCTCCCATCGTTCTCCCTGACGAGTTG ATTGTAGCGATTCTGGTGAGACTACCGGTGAGTTCTCTTCTCCGTTTCAAATGCGTCTCCAAATTGTGGCTCTCTCTAAT TTCAGATACCCAATTTGCGAAATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTCATC AACTCCAATTCCAATCCTTAGACATTGATTCATCACCACCCAACAATGAATCTGCACTGCTCCAATACCTCCGTCAAGAG TTTCATGGTTATGGTATAGAATACCATATAGATTTTCACCCCAAACTTCACGTCCTGGGTTCTTGCAGAGGGTTTCTACT CTTACTTTCACCCAATCAAAATGATTTCATTGTGTCTAATCCATCAACGGGTGTGCAAACACTAATTCCATCATCTACTA GTTTTAGATATTCTAGGCATTCTCAGTATGGTATTGGGTATGATGAATCAACTGATGACTACTTGTTAGTTTCTATAAAT TCGTTTACAATTGACCTGTTTTCTTTGAAAACCAATTTACCCTGCTCGCTGCCACTGGATCATGAATATCAGTTGTATGA TTATTATTTTGCTAGTCCAATCGATTTGTTCTTACATGGGTCTCTTCATTGGTTGGTTACGTCGAGTCTTACGAAGCTTA GTGTAGTTCTTGCTTTTGATCTGGTAGGGAAGAGTTTATCAGAGATTGCTCTGTCGCCTGATTTAGCTCTGAAGAGAAAG CCATATCATTTCATAGAGATGACAGGATGTCTTGGTCTGTGTCCTGGTCTATGCTACTCTGGTAATCTTGGCATCATTGA AATATGGATAATGAAAGAGTATAAACTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACATCCTTAGCACAC CCCGCTTTTTTCCAATATGTTTCACTAAATGTGGTCACGTTTTTGGATCAGATGAGGCTGGAAGATTCTTCAGAGTCAAC GATAAAGGAAAGCTGCTTGCAGTTTGGCCGTTGGACTGGAAGAGCAATTATCGTCTATTACATAGTCGTATGTATACACC AAGTTTACTGTCACTCCCTAGTTAATTTGTAACAGACATCAAGTATCAATTCACTGATTCTCCTGAGGCTCTGTTGGTAA TAGCCACCCCAATGAATTTCCTCATTCAGCATATCCAGCAGGCGATGATAATCTGGACCTATTGTAATGTTTGACCTAAT GTCTGCTCTTTTTGTCTTAGATAATGACATTTTAGATGTTAAATATTAAAACTTTTCAATTGTATGTAAGGTGTTTGATG TGCAGTTGAAGGAGAAATCAGTGATGGTTGTTAGCATGTACCTCTATATTCAATTTTACTTTTAGACAATGCTAATTGGT CCCGAGAAAAAACAAGTTTGAGTTGCACTGGGTTGACTTGACCTTGACGCCGCCACTAATCTTCACTACTTTCCCACGAA TCTTTTCTTTAACCATTATTACTTTACTTGTGATTTTTTTTTTTCAATGAATAAAATTTAGGGTTAGAGGCTCGTGTTGA AAGTGTTGCGCCCAAAGAGCTCTAACAAGACTTACATTTACCTCACCCGAACTCGAATCTGCAATGCTCCAACCCTAGTG ATTACTGATTACTTGTGATTTCTTACATCACCGATTCCCTTCCAACTCTTAAAAAATAGTTCTTTTTTCCACAACAAACA AATGACATTCATTTGCAATATCTCAGACGACCCAAGTCACTTCTGGTAGGTACGTCTCTTTGTTACTCACTCACAATCTC TGTGGAATTTTCAATTAACACTTGAAAGTTTCAATTTTTACCATCAAATTTCAGTTAGATTCAATTGGGGTTCGTTATGT CGTCGTTACCTGATTCCTGCGATTCAAGCTTGCTTCTTTTTCTGCCAGATGATGTATTTGCCATGGTGTCACGGTTCCTC AAGCCCAGAGACATTTGCAATCTCAGTCTCTGCTGCAAGAGTCTCTGCGATCTTTCAGCTTCTGAAAAAGTGTGGCTCAC TCAATGTGACATCTTGAACATGCAAAGACATTGTTGAGTGGAGAGAGGGTGTGTCATCTTACAAGGCACTTTGCCGTTTT CTTCTGAGTGTTCAACCATTGCTTGGAACATGGGTGTATCAGAATCCTGAACTTGGTAACCTTGTCTATGTCATGCCAGG TTATGTGTCTGTTTTTTGGATGCAGGGTGGTTCCTCAGGAGATTGGTTCATTGGGGATTCATGATGGTCCTATCCTCTGG TCTGCTGTGTTTGAAGTTATTGGTGATTTTGATGGTTCAGCTGTTTTTGTCCTCCATGGAAGAGAAGAGGGTGTACATTA TGTTTGTCTAAGGTCAGTGAAGTACATAGATAAATCTTGCAATGTTTTGTTGCTTGAGGTTGAGCCCTTGAAGGGTAGTA GCTTAGTATGCCAATCGGGTCTGGAGTTCTTAAAGAAGGTTTTTAGGTCATACATTGAGCTTTCTAGGCCACAAGGGGCG GTTGGAAATGATGATGGAATACAGGTTCCCTTCAGTAAGTTGACTTTTACAGATAGAGGAATGTTGCTTGATATTACAAC TATCCAAGTTCGACAAGAGGTTCCTAACATGGCAATGGGACCATTGTTTACTAGGTCAAGGGATGATTATGATAATTTTC AGAAGGATTTGGTGCTCTCGAGGGATAGAAGAGTGGCCCTAATTCAAATGTACAGGCTCGGGGGTATTCAGATTGACAAT AAATGTACAGGAGAGGGTATTGCAAATGGTTATGGGTTCAACTACCCTGGATCACAACCCGGTTCCCTCTTTGTATTTCA AAATGGTATCCTTGCCTTCGTTTGGGTAGATTCAAGTGTTGTTTTGACCTTGCAAAGACTTGACTTGCAAGAACTTTTGA AGAAAGGAGAAAGGATACCCTCTCTGCCCCCCATCAACAATTTTTCATATTTGACCAAGTCTTACTCAAATGTGTTTACA GTCTCTCCTAGCACTTAGTTTTCATCGAGGTTTGCCTTAACCCTGAAGTACCAACTTGTTTTATATTTCAAAAATTTCAG ATCAATCTATGCATATCCTCCTTGCTTCATTATATTTTTTGTGTTACAAAGATATTATTTGTGTTAGATATAGGTTAATA GATATCATGCCTGTTTCTTATTATTACTCCCAACCATTTTTCTTGAAGTTACATTTATGCTGATGTATAGACTTTTGACA AGTTAATAACCAATTCCAATTAGGTGGGTTTTTGGACTTTTTGGCATAATTTTGTAGATCTAGAGGACTAACAGAAAGTT GCTGCATTGTGTCTCTCTAGTGAGTTTCACTCTCCTAGTTGGTGACTTAATAAAACTAGTTGCATAGACCAATTTCATTT GAATGATTATTTGGATCTTCCAAGAAAAACAGTTTATTCATGAATCTAAGAAAACCAGTTAGAAAGGCTGTCTCCACTCA GTACAAGAAATCTAATCTTTCTTTTTCCGTAGTTAGTGTTCAGTAAAAAAGTGAAAATTGTTAATCTCATATAATCTTCT AGAAGGAAATTATCCTGTACAGAAAAAATTGCTCACTTTCTTTTGCTCTTCACCTCACTTCTCTATAGGCATATAGAAAA TGTCCTGCCTGTGAAAAATGGCCACATTTTAAGTGGATCACGTTATATGCTATTGTAGACATGATCAATGCTAGCAACAC ACTCTTTTATGATTAATGTATTTTTTTAATAAGCCAAAACACTTGCCCTGTAATTTGATCGCTTTTTAAGGTGTGTTGAA GTTTATAAAAATGGACCAACCATAGAAAGTTTGTTAAAGAGTGTGTTGCTGGCATTTCTGAATTACACTGACATTTGCCC GTTATTACTTAATATATGTCAACCACCTTTGTGAACTGGGGAAATTAACATTTAGTAGAACAGAGATCAGCTGAGTCCTG AATACAATTAGGGGTGGAAAATGCTTCTATGCGGTACAAGTACAACAATCATTGGAATCAGATTTTGTAGTTCTCCAATA TATACAATGCTTTATTATATCTAGCAAGCCCTGCCACCAGTGGATTATTTTTTCAATTACTGTTATAGTGTTATGAAATA TATTGTAACATCATTCAGATATAGCCACTTCATATGCTACTTTTCTTTATAACCTTTCCCGCATTGTCTGTGAAATAAAT GATGGTAAAGGATTTAAATGTAATTGAAATCTATCGAAGATTGATATTAATTGCTCGTTTTTTTTTAAATTCTCTTCTAA AAGTTTGAATGTTGACAGGTAAAGACAACACCAGTATATTAGTGGGTTTGGAGCTTCATGGTTTTGACATAATAGCAGTG TAAGTTGTTATTCAGTTGTAAAATTCAGGTAGCCATAAAAGGTTGGATTAGTTTGATCAATTTTCAGTAATTTTTATAAT AATGGCTTATTTTGATAGTAAATGAGTTTAATTTAGTAACACGTTTGATTAATTTCCTGCTTTTGCAGGCTTCCCAGCGC CAAGAAGTTGGCATCCCGACGCTTAGGTGTTGGGAAGGCGCAAGCTTAAGCGTCCCCGCGCTCAGGAGATATAGATCATT AGATCATTTCAATTTTTTGGAAAAAATCTTTTAGGCACAGAAGGAGGGCAGATGGAGTTTATCAGAGGTTTTGGGAGCAA AGGAGGCTAGAGAGCTGGAGCTGAATCTCAGAAGTGGAAGCACCAACTCCTGATGTCTTCTACTTTTTTATACTTTGGTT TTACTTGTTTCTCATACTTTGTGACTGGCTAAGTTTTTCATTGTTAGAGGGTGATTTTACTACTTGAAATACTTGTTCCA AACACTTTAATAATTTAATATGCTGCATTTTAGCTTTGTTATTGTGCCCTCTCTAGTTTTAATGAATCTTTGTCTATTGG ATGATGATTTAGCATGTTTGTTATTGGAAATTAGAGTTTTCTTGTGTGAGTTGAGAACAGTGTATATTATGTTTTTGTCA GTGTATATTATGTTTTTGTCAGGGCCGTGTATAGACATCTGGGGGCCTAAAAAATCATTTAGGGGCTTAAAGATACTTAA TATATCATATAAATTTTCGATTTTATTATATTAATCTTCTAGCTTTCTGAGCTGCAAAATCATTTATAATAGTTTTAAAA TCAACAATTCTAACATTTCGTGTTC
CDS sequence (LotjaGi4g1v0411100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAACGAGCAGGGACCAAGGAGCACGGAGGAGGAGAACCCTTCGCTCTCTCCCATCGTTCTCCCTGACGAGTTGAT TGTAGCGATTCTGGTGAGACTACCGGTGAGTTCTCTTCTCCGTTTCAAATGCGTCTCCAAATTGTGGCTCTCTCTAATTT CAGATACCCAATTTGCGAAATCCCATTTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTCATCAA CTCCAATTCCAATCCTTAGACATTGATTCATCACCACCCAACAATGAATCTGCACTGCTCCAATACCTCCGTCAAGAGTT TCATGGTTATGGTATAGAATACCATATAGATTTTCACCCCAAACTTCACGTCCTGGGTTCTTGCAGAGGGTTTCTACTCT TACTTTCACCCAATCAAAATGATTTCATTGTGTCTAATCCATCAACGGGTGTGCAAACACTAATTCCATCATCTACTAGT TTTAGATATTCTAGGCATTCTCAGTATGGTATTGGGTATGATGAATCAACTGATGACTACTTGTTAGTTTCTATAAATTC GTTTACAATTGACCTGTTTTCTTTGAAAACCAATTTACCCTGCTCGCTGCCACTGGATCATGAATATCAGTTGTATGATT ATTATTTTGCTAGTCCAATCGATTTGTTCTTACATGGGTCTCTTCATTGGTTGGTTACGTCGAGTCTTACGAAGCTTAGT GTAGTTCTTGCTTTTGATCTGGTAGGGAAGAGTTTATCAGAGATTGCTCTGTCGCCTGATTTAGCTCTGAAGAGAAAGCC ATATCATTTCATAGAGATGACAGGATGTCTTGGTCTGTGTCCTGGTCTATGCTACTCTGGTAATCTTGGCATCATTGAAA TATGGATAATGAAAGAGTATAAACTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACATCCTTAGCACACCC CGCTTTTTTCCAATATGTTTCACTAAATGTGGTCACGTTTTTGGATCAGATGAGGCTGGAAGATTCTTCAGAGTCAACGA TAAAGGAAAGCTGCTTGCAGTTTGGCCGTTGGACTGGAAGAGCAATTATCGTCTATTACATAGTCGTATGTATACACCAA GTTTACTGTCACTCCCTAGTTAA
Protein sequence (LotjaGi4g1v0411100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNEQGPRSTEEENPSLSPIVLPDELIVAILVRLPVSSLLRFKCVSKLWLSLISDTQFAKSHFDLAASPTHRLLLNCTHQ LQFQSLDIDSSPPNNESALLQYLRQEFHGYGIEYHIDFHPKLHVLGSCRGFLLLLSPNQNDFIVSNPSTGVQTLIPSSTS FRYSRHSQYGIGYDESTDDYLLVSINSFTIDLFSLKTNLPCSLPLDHEYQLYDYYFASPIDLFLHGSLHWLVTSSLTKLS VVLAFDLVGKSLSEIALSPDLALKRKPYHFIEMTGCLGLCPGLCYSGNLGIIEIWIMKEYKLQSSWTKIVFSTHDILSTP RFFPICFTKCGHVFGSDEAGRFFRVNDKGKLLAVWPLDWKSNYRLLHSRMYTPSLLSLPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 105 | 93 | 1.2E-7 | – | |
| ProSiteProfiles | 16 | 62 | 47 | 9.921 | ||
| PANTHER | 20 | 359 | 340 | 3.2E-65 | – | |
| PANTHER | 20 | 359 | 340 | 3.2E-65 | – | |
| SUPERFAMILY | 21 | 74 | 54 | 4.45E-13 | ||
| SMART | 22 | 62 | 41 | 4.8E-5 | ||
| Pfam | 22 | 55 | 34 | 6.5E-7 | ||
| TIGRFAM | 127 | 314 | 188 | 2.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0411100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…