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LotjaGi4g1v0416100.1

Overview

Field Value
Gene ID LotjaGi4g1v0416100
Transcript ID LotjaGi4g1v0416100.1
Lotus japonicus genome version Gifu v1.2
Description Myb transcription factor; TAIR: AT2G16720.1 myb domain protein 7; Swiss-Prot: sp|O49608|MYB32_ARATH Transcription factor MYB32; TrEMBL-Plants: tr|G7LGH2|G7LGH2_MEDTR Myb transcription factor; Found in the gene: LotjaGi4g1v0416100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79171492..79173316) extracted from Lotus japonicus Gifu genome v1.2.

CTTCAGGTTCTAGAGAGAGAGAGTGAGGCAGTGAGAGTGAGACTGAGACCATCAGAATGAGATGGAGAGAGAGAGAGTGA GTGAGAGAGTAGCAAAATCAGAAGTAGAAGTATAAAGAAGCCATGAAAAGTAGAGCTACCTACCCAATCAAAGCACTAAC TTATTTGCAACCACTAATCTCTTTTCTTTCTTTCTCTCTATTCTCTCTCACCAACTCACTCAGTCAAATAGCTTTGAGAA AATGAGTCTCCATTTACATTCTCTCCCTCTTTTGTTTACTTTCAAATAAATCTCGATCTCTCTCTCTCACACACACACTC ACTCACTCTCTCACTCTCACCCAACCAACCACCATGGGCAGATCTCCATGCTGTGACAAAGAGCACATAAACAAAGGTAC TTGGTCCAGAGAAGAAGATCTCTGCCTCTCCAACTACATCAAGGCAAACGGGGAAGGCAACTGGAGAGCTCTCCCAAAAG CCGCAGGTATACATTCGTAACATGTTTTTTCGAAAGAAACATTCATAACATGTTTGAATCTGGATTTTTTTTATAATATA AATTCTGATACTCAGAAGCTACTCAAATAATTTATTTATCTAATGAATTAATGTGTTTTCAGGATTGAACCGATGCGGCA AGAGCTGCAGGCTCAGGTGGATTAATTACCTGAAACCCGGCGTCAAGCATGGAAACTTCACTGCTGAGGAAGATGATCTC ATCATCCAACTTCACAGTGAGGTTGGAAACAAGTAAGAACACACAAAACCCGCTATTAATTTTCCTCATTAATTAATGAT TGTAAATATATCACCAGGTTCTAATATTTGAGTGTCCCAGTTTTTCTGGGTCTACTCTCTGACGTTATCGTGCTTTAAAT TGTGTGTCACATACAAACAAACAAGATATAATTATTGATGTTTCTTCTTGAATGAATTCTCAGGTGGGCTTCGATTGCGG CCTATCTACCTGGGAGAACTGATAATGAGATCAAGAACCACTGGAACACCCGCATCAAGCGCCAGCTCTACCTCCGCGGA ATCAACCCCGCAACCCATGAGCGAATCCCCGGCTTGGGCCAACTCCCCTCTTTATCCACAGCCTCTGTCGCCATTGTCAC CGCTGCCACCTCAGCACCTCCTGCACCTGTGGTGGGCCTCACAAGCAAGAAGGTAATCATCAGCGCCAACAACCACAGCA GCAGCAGCAACAGCATCGTCACTAGCGGCGGCAGCATCAGCAACCCCCAGAAGAACAAAGACAAGAAGAAGATTGAGGAT CAGTTTCAGATGTTTGATGTTTTTTCCAATTCCAAGGTTGTTGGAAAGGCTGCTGACTCAGGCTCGAATAGAAGCAGTGC GGTCTCTGCATATCAGGAAGCTTATAATCCTGAAATCAACTTGGAACTTTCATTGGCACCACCAATGAACCCTCCTCCTC CTCAGAGAATGTGATGCCACCACCACAACAGGTTTTAGGGTTCCAAAGGGGTGCTGCTCCTGGTGGATTTATGAGATTTT ATGGGCTGTGAAGAATAATCTGAATGATATGATTCATTTTAGAGTTGATAGGGTGGGAGAGTCTTTTTGTTGATCGGAGT TTTGCAACAATCAGGGAGGGACATGCAGTAGGGCCGGGTAGAATGTTTTTAAAACTTTATGAATAAGTTTTCAGAAGATT TTGGGGTGCCAGATTTTGGTTTCATTTGTATGTCAATTCTGAGAACAGTGAATCTGAATTTTAATTTTAATGTCAACCAA TTGTGTGTTCTCCATGTCACCTTGATCTATACCTTTATTTGTTGCATGATTGTGTATTCCTTCGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0416100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAGATCTCCATGCTGTGACAAAGAGCACATAAACAAAGGTACTTGGTCCAGAGAAGAAGATCTCTGCCTCTCCAA CTACATCAAGGCAAACGGGGAAGGCAACTGGAGAGCTCTCCCAAAAGCCGCAGGATTGAACCGATGCGGCAAGAGCTGCA GGCTCAGGTGGATTAATTACCTGAAACCCGGCGTCAAGCATGGAAACTTCACTGCTGAGGAAGATGATCTCATCATCCAA CTTCACAGTGAGGTTGGAAACAAGTGGGCTTCGATTGCGGCCTATCTACCTGGGAGAACTGATAATGAGATCAAGAACCA CTGGAACACCCGCATCAAGCGCCAGCTCTACCTCCGCGGAATCAACCCCGCAACCCATGAGCGAATCCCCGGCTTGGGCC AACTCCCCTCTTTATCCACAGCCTCTGTCGCCATTGTCACCGCTGCCACCTCAGCACCTCCTGCACCTGTGGTGGGCCTC ACAAGCAAGAAGGTAATCATCAGCGCCAACAACCACAGCAGCAGCAGCAACAGCATCGTCACTAGCGGCGGCAGCATCAG CAACCCCCAGAAGAACAAAGACAAGAAGAAGATTGAGGATCAGTTTCAGATGTTTGATGTTTTTTCCAATTCCAAGGTTG TTGGAAAGGCTGCTGACTCAGGCTCGAATAGAAGCAGTGCGGTCTCTGCATATCAGGAAGCTTATAATCCTGAAATCAAC TTGGAACTTTCATTGGCACCACCAATGAACCCTCCTCCTCCTCAGAGAATGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0416100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRSPCCDKEHINKGTWSREEDLCLSNYIKANGEGNWRALPKAAGLNRCGKSCRLRWINYLKPGVKHGNFTAEEDDLIIQ LHSEVGNKWASIAAYLPGRTDNEIKNHWNTRIKRQLYLRGINPATHERIPGLGQLPSLSTASVAIVTAATSAPPAPVVGL TSKKVIISANNHSSSSNSIVTSGGSISNPQKNKDKKKIEDQFQMFDVFSNSKVVGKAADSGSNRSSAVSAYQEAYNPEIN LELSLAPPMNPPPPQRM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641
1 192 192 1.1E-70
IPR015495
PANTHER
PTHR10641:SF1222
1 192 192 1.1E-70 –
Gene3D
G3DSA:1.10.10.60
7 67 61 1.1E-16 –
ProSiteProfiles
PS51294
9 61 53 16.031
IPR017930
SUPERFAMILY
SSF46689
12 108 97 2.2E-30
IPR009057
SMART
SM00717
13 63 51 1.0E-11
IPR001005
Pfam
PF00249
14 61 48 3.2E-12
IPR001005
CDD
cd00167
16 61 46 8.75229E-9
IPR001005
ProSiteProfiles
PS51294
62 116 55 27.484
IPR017930
SMART
SM00717
66 114 49 9.4E-17
IPR001005
Pfam
PF00249
68 110 43 8.9E-16
IPR001005
CDD
cd00167
69 110 42 1.7936E-13
IPR001005
Gene3D
G3DSA:1.10.10.60
69 115 47 5.7E-20 –
MobiDBLite
mobidb-lite
173 189 17 - –
MobiDBLite
mobidb-lite
173 197 25 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0416100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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