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LotjaGi4g1v0419300.1

Overview

Field Value
Gene ID LotjaGi4g1v0419300
Transcript ID LotjaGi4g1v0419300.1
Lotus japonicus genome version Gifu v1.2
Description Membrane-anchored ubiquitin-fold protein; TAIR: AT4G24990.1 Ubiquitin family protein; Swiss-Prot: sp|Q9SW27|MUB3_ARATH Membrane-anchored ubiquitin-fold protein 3; TrEMBL-Plants: tr|I3SSW2|I3SSW2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0419300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79479664..79485195) extracted from Lotus japonicus Gifu genome v1.2.

AATTGGGCAACTCAGCACAGAACCTGGTTTCTTCTTGGGCCAAAATAAACCCAAATCCACATCATTCTGATCTTTATGAA ACGGCACCGTTTGTCTTTTTGAACCCTGTCGTTTTGACTGGGTTCATCTTAGCCTCTGCTCTCCACAGTGAGTTAGGGAC TCAATGAGTAATGTTTTGGGATCCCTAATGTTTTTTACTTTTATGAATCATCTACGTGAAACAATTTTGTTTGAGCCGAA AACAAATAAATTATTACGGAACTAACTCTTTCCGTGTTTTTTTTTTCTATACACAAGACTTGAAGCCGATACATAATTTA AGGAAAATACAATATGTAACACTTGAAACAATCACGCGGTGAAGTTAATGTGAATCTGTGAATTAACTTTAAAAATAATT TGTTTCTGTTTTGGTATGAATTAGTATTAGTATTAATTAATTGATTGATTATTCTTTTGGTTGTTGATGAGTTGAGGGTG TTCACCAACAGAAGAAGCAGAAGAAGAAAAAGAAGCAAAGAGGAATAAAAGCCAAGTCAAAACCTGAAAATGGTTTCACT CTGATCAAGTTGAAAGCTCGTTGTAACTTGTAAGTGTTCAAATTCTCTTTGTTTTTATTGCTATTGGGATTGCAGATCTT TGTGATGGAATCGAATTGATTTGGGAATTTCAGGAATCGTGAAGTGAAGAGGGTTAGGGTTTGGTTGAGAAAGGAAGAGG AGAAGAAGGAGAAGCAAAGGTGAATTCAAATGCCGGAAGAGGACTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCC GATATCGGGCCTTTCAGGTACTCCTCCGCCGCCACCGTCGACATGCTTAAGCAAAGGGTTGTCTCTGATTGGCCCAAAGG TTACTCTCTCTCTACCATTTTGTTCAATTCAATTTCAATTTCTTGCTTGTTTACTTGTTCTCTTTGTTTTGATTGATTAT GGATTGGTCAATTTTGTCTTTGAGAATATTCAGCTGCTAGTTTGGTTTGGAGGGTTGGATTTATGTATGTATGTATCTTT GGGTTGGCCAAAGTTTTTAGCTCCTTCTGAGTTTGGCTGTATGTGAGTGATTCTCCAAGTTTGTAGAGTTGTGTTCTGGA GTGCTATTTGATCTTTTCTTTAATTGTTCTGGGAAACATTTTATCCTTTTTTTTTATGCTAGAAAAGTTTTTAAGTTCAG AATCGGTAGTTTTTTTACTGAAAACTTATAGTTTTCATATGTCAATTAAGATCTGAATTGTGTCGTCGAAGGCAAGTGAA GTCCAGCTTAGGTTTCGGCTGCATTTTTCCATAACTGCACAGTCGAACATTGCCAACAATTATTTTTTATCAAAGTGGCA GAAACTCTGACCTTTTCTTTTTTTTATTTTGATTTGTATGTTAGTTTGATGGACTTGAATGTGGGTTAATTTATGTGTGA AGACTGACGAATGAGTATTTCCAGTAGATTTTTTCACTCGTACAGGCGAACTGGCGTGCTTCACTTGGTTTTGTTTAAAA CTTTTCTAAATAAGTGTAATTATTGCCGTACTTCTGCTGTCCTTCTATTGTCCTCATAGTGTTACCAAATAGAGGCTATA GCGGCGTAGCGTCGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCACTATAGCGCGCTATTCGCC GCTACTAGCGGCCGAAATAGCAGATTTTTGGCTCACCGCGATTGTCCGCCATCGCGATTTGACAACACTGGTCCTCATTA ATAGTGGTAAAGGACTTGGATGTCAGTTCATGTCTCAATATTGATATTACCAGAATTTTTTTCATGAAATCTCTTGCTTC GCTGAAGCCAACTATATATCTAGGAGTTATATAGTGGAGTTATGTTGACATAAGGAATAAGCTAATCTTTGCACAGAGCA AATTTAAACCAAATTTATGGGATCAGAGCCAGAGAAAGGGCAATATAGTGTTCCATGCAAGAATAAGAAACAAACGGCTT GAACATGGTAACCAATTCCACATAAGGTTGGGAATTTCAAAACAGGCAAGGGTAACTCTGGTGGTAGGGTGGCTGAGGCC AGCAACCAAGGCCAGGGGCTGGCCAGAAAAGTCAACGCAAGGAAATCTGGACTGGTTGTGGTCATGAGTAAAGGAGGGTT GGAATGCACTACCACATACGTGGGCAAGTCCGGACAGATCAGCAAGATCTGATTTTAATGGTGTAGCCGGTATATTGAGT AGAGACCCGGAATGTTAATAACTAGATCTGGCAGCAATGGTGACGAGGAATAGCATACTAGGAATGTGAACACGACCCCT AATGTTGACTGGAAAGCAGTGTGGAAGCCATAAGTAGAAGGGAAAACTAAGATTTTGGCGGTTATGGCCAACAAGGAGAT CGTCACTAGAAAAATATCACATGGGAGAGAAAGGGAGTTCTGGATTTTTAGGAACTCAAAAATGGAAATTGTGATTGTAG TCATGGAGGATCATACCGCATTGATGCCATGTTTTATTTGTAGAGGAAGAGTGGAAAAAAGAAAATTAATATATTTCACA GGTATTGAAAGGTATGTATGATACAAAACACAACACTCCTATTTATGTTGATAATCTAATTCAAGAAGTACTAGTACAAC TAGTACAAGTCCAAAGCAATAACACTCCTGACATAATAAGATTCCTATAACCGTAAGAACCCTAATGTTATAACAAGTTA CTTCTTTTTTCTGATGCCTTCTCAGAACAAATGGAGTACAAGTGATTTCCCCCTAATTTCTGTGTCAACTTTGTTACTGT GAATCTATAAAATGATTCAGGATCTTGTTCGCATGTGGTCTTGATATGATTGAAGGTCACTTAACATATGAAAATTATTT TAAATATAATCATCTTAACATTAGATAAAGAAGCATTACTTTAGAAAGTTATGGTCAAACTCTCCGAAAGGAAAATTTTG GCTCTAGTAAACAAATTTAGTGACGTTTCTTATCTAAAAAGCAGATTGATAACTAAGCAGAGTAGTAACTTGGTGACGTT GAATATTAATCGTCTTTTGATGATTGTTAACTCTGTATCATAATTTCAGCATTTGATGATTCAATCAACTTGTTATGATT ATTATTCATGTAGTTTCTTGGGCTCCTTTTTACAACTTTGAGGACAGGGTATGTTCATATTCTCTTCTATGTTCTTTAAT TTTATTAGTTGTACTTCTTCCCGTAATGTAGGTAAGACAGTCATACCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTC TGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGTCCCATTTGGTGAGACTGCAGGGGGTGTTATCATGC ATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAAGCTGGTAAGTTCCATGGACTTCTTTCTATTGCAAATACATGTGAC TTTGATAGTCAGCTTTTTTAAGGTTTTGCTATTTATTATTACTTGGTATGAAAATTAACGGGAGCTCATGTTCGAAGCAA CTTCCATGTCTTAGCAGCTGAATCTGCATGATGACTTTGGCTTGCTATTATGTGATAGTAAGTAGAGTGATTTAAGAAAC CTTTGACTATTTCAGTCACTCTTATTGAAATAGATGAAGTAGAACTGGCTTGCAGGATCAAGTTAATATGAGCAGTTGAA TAAACATTTCATGTGTTACTGAAAGCTAAAAGCTATATGGTGCTTGTGACTGATAGGCTTTTGGTACTTTTTTGTAAGAC ATTCATCTTACTGGTTTTGGTAGGCATAGGTTCTGCCCAACACCCATTTGATGGAGAGAGATTCTTGTGCGGACTTCGTA GACTAAACCAATTAGTAATTGACATAATGATTTTTAAGTTTTTTTATCTTTTTCAGATAAGCCATATGATTTGAAGTATA TAATTGATGTGTGGCACCGAGATTTTGATAATAGTTTAATGAGCAGTGCTGCCACCATACTTCCTAACACTCTCATATTT GGTAAACATTTATGTGTAATCTACTAAATCATGCTGGTCTCACTCCTTATATGGTGGGACATACTTGAATTTCACACAAT AATAGTGCATTGAAAAAATTGTGTTACAGAGTATGTTTACTAGCACTTCTCTAATTCAAAATAAAATTATGATGCATGAA ATTTATTTTTGTAGTCTACCCAAGTTTTGTAGACTCAAATTGTATGATAGAAATGGAGAGTGTTTTACTAGTTAGGCAAT ATTGTATTTTTGTCTTTAAGAGAAGAAGACTTGCCCATGTTTGGTTTAGGTGGTAAAGAAAGCGGATATGCTTTATTTTC TAGGTTCAAAACTTAAGATCCCTATAATGGATGTCAACCAGCATGTTAAAGAGGAGAGATCCAATGCCTTGAGTGTCAGA TTCTTTTTCTATGCATGGCACAGGCCTCCATGCTCTGCATAAATATCTATTGTATTTACTTCATAAGCTGCATTGTTTGT CATCCACAACCACCAAACAATTTGTCTTAATGACATTGCAGTTTGTAGATCGATTTTCATGCCAATTATCCATATAGCTA AGCTTAGTATTAGTGCATTTTATGCATGTTGTTTGGTTACACGTATGGGCAGTAGGACACCGCCACACTTGGGATTCAAA CCCACAGGTGGGTGTGTTGCTTAATTTTTGTTTGGTGGACGCTGACATGAAATTGTGAATATAATACTGGCTGAAGGAGA TGCCTTGGTTAGACTGGGGTGGGGAGTCCTCTATCACATACGAAGCATGTGTTAAGTATTCCTTATAATGGGTAGAGCAA TCCTCCCATCAAAGCTAGCTTTTGAGGTAGAGTTAGGTCTAACCCCAATTCTAAGAGCATATTTTAGACTTTGAAAACTT CTTTTAACTTTTTCATGTGTCTTACTGTACCTTAGATTTGAAGGTTTAATAAATTACATGATTTGATATTTGCATTTCTC TTTTCCATTACAGAAAAGAAGGTTGATGATTCTCCCAAGAAGGTCGTCTGTTCTTGTTCCATATTGTGAAGACAGTTTGT AAGTTGGAGATGCTTATCCTCAATTCATCAATCACCCCTTGAACTACAGAAATCAACAACTGCTTGAACAAAAAACCCTT CTATTTTCAGCGTTCCTGTGTAAAGACGTATACGGCAATTATATATTTATACATAAGTTTGTGTTAATGGTGGCTTCGGA AGATTGTGTCATTCTTTTATTACAACGTCTAAAAGGTTGATGACAATGTATCCATTGATTACTACCATCATGCGGACGTT TTCTCCTTGCATTTCCAATAACGTGCATGATTATATCATATGCATCTGAGTGTGTAACCACTGCATCGGTGCATCCTTTG TCATTTTATCATGCACATGGATAATTCACTACAACATTTTAGCTCAACTAATTTATCTTCAAAATCTTCAAAATCCTTAC CTTTCAAAATAAAATAAAATAAATTTATCTTCAAAATCAATTCTGAAATCTAAAAACTACTCACATAAGCTTTTCTACGG AATTGATTCAGG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0419300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGGAAGAGGACTTGGTTGACATCAAGTTTAGGTTGTACGATGGCTCCGATATCGGGCCTTTCAGGTACTCCTCCGC CGCCACCGTCGACATGCTTAAGCAAAGGGTTGTCTCTGATTGGCCCAAAGGTAAGACAGTCATACCAAAGTCAGCAAATG AAGTGAAATTGATTAGTTCTGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAGTGTAAAGTCCCATTTGGTGAGACT GCAGGGGGTGTTATCATGCATGTTGTTGTACAGCCATCTCTAGCAAAATCTAAAGCTGAAAAGAAGGTTGATGATTCTCC CAAGAAGGTCGTCTGTTCTTGTTCCATATTGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0419300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPEEDLVDIKFRLYDGSDIGPFRYSSAATVDMLKQRVVSDWPKGKTVIPKSANEVKLISSGKILENNKTVGQCKVPFGET AGGVIMHVVVQPSLAKSKAEKKVDDSPKKVVCSCSIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.20.90
1 99 99 4.9E-34 –
PANTHER
PTHR13169:SF3
1 116 116 2.2E-68 –
PIRSF
PIRSF032572
1 117 117 3.9E-47
IPR017000
PANTHER
PTHR13169
1 116 116 2.2E-68
IPR040015
SUPERFAMILY
SSF54236
2 96 95 1.43E-23
IPR029071
CDD
cd01814
6 92 87 1.82551E-44 –
Pfam
PF13881
6 115 110 2.7E-40
IPR039540
ProSiteProfiles
PS50053
7 75 69 10.179
IPR000626

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0419300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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