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LotjaGi4g1v0420200.1

Overview

Field Value
Gene ID LotjaGi4g1v0420200
Transcript ID LotjaGi4g1v0420200.1
Lotus japonicus genome version Gifu v1.2
Description Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A; TrEMBL-Plants: tr|G7LI38|G7LI38_MEDTR SAM domain protein; Found in the gene: LotjaGi4g1v0420200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79554719..79557984) extracted from Lotus japonicus Gifu genome v1.2.

GAACAAATAAAATAAAATAAAACAAAACAAACCCTTTCCAGTTTCCACTCACAATCCAAGAACACAAATAAACACACCAT ACATACCCACTTTCTCTGTTACTCTGCTTCTACCCACTCCATCACTCTCCCAAACTCAAACCCATTAATTCTGAACGGAT TCCAAGTATTGGAATGGCTGAGATTCATGCGGCGGAGGGTCAGCTCAACGGCGCCGGAAACCTAATTCTGAACTCCTTGG AACCCATCGGAACCAAGCGCCAGAGGAGGCCTAGCGTCCGATTAGGCGACATCGGCGGCGACCAACCGCACGAATCCCAC CACCGCCGAAGCACCAGCAGCAAGGGGTGGAAGCTCGGCTTCGACCACCGCAAGGAAAAGGATTCCACCGCCGCTAACCC ATCATCAGGTAATAAACCCTCCAAGACTCGACCCTTAACCAATTTGACCTCCGTCGCCGACTTCAATGAAACCCTAGACG GCGACGAGAGGGAAGGGAACAACATCGACAGCGTCGCGATTGGTAGCTGGAAGGTGAAAGAGTCCAAGAAGAGGGCCACC AAGAGGGTCAGATCGAGTTGGGTCTCGAGAATCGAGGATGGTGGGGGCGGTGGTGGTGGTGGTGAAGGGGAGGAAAAGTA CAGTGGCGGCGATGATGATGTGGATGATGGGTATCGGGAATTTGATATGGAGAATTCGGATTCTCTGTTGAAAGAACAGA GCCCTATTCAATCTATGGAGAATTTGGGGGTTGATGGGCATAGGAGGTCGTTTAAGGGTAGTAGGGATCACCATGATGGG ATTGAGCTATCTGGGCCTTCTGATACTGATGCAAGGGATTGGAAGTGTGGAGGGACTAGTGGTGGTGATAGGAATGAGAA TGGTGGTGGGAGGGTCAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGGTTGGGGTTAGGGCGTTATGCGCCGG TGTTTGAAGTGCATGAGGTTGATGATGAGGTTTTGCCAATGTTGACACTAGAGGATCTCAAAGATATGGGGATTAGTGCT GTTGGATCCAGGAGAAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGCTTCTCCTGAGCTTTTACTTGTTTTTTTTC TACAGTTACGGAATGTAGCAGTGGGAGAGGAGGAGAGGATTCTCAGCCATAGCAAATTCAGATGAGTATGTCTGAACTGA GATATAGCATGTTTCTCCTGTGACTTTTTTTAGGCTTGGAATCGTTAGGTCCTCACATGTTCTTATTTGAGAAACATCTT TTTGAAATCTAGTGCAAGTACATATGACTCTGCAAATTTTGTTGGAGCATTTTGTTGTCTTTCTGAAGTAATTCCAGTTG TATTGTTATCAATTAATAACTTGAAAGGAGTAATACGAGGAAGAAAGGAACACAATTATGCATTTGGAAAGTTTTTGCTT AAATAAACTGGAAATGCTGTTAATTTCTTCTTTCCATCCATTGGAATACCATCTATACAGCTGTGTAGTCTTCTTGAGAA ATTCTTGTGTTGACCTTCTATTCAGAAGTTGTGTAGACTAAAGTTTTGATCAATCAACTAGCAACACATCATAGCCCTTG GGTCATGTAATTGTTGTACTTTTGAAGTGATATAGTATCAATTGTTGATTGGTTTGGCTTGCACAACTTGCGAGAACTTT ATCTATACGAGTCCCTCAGTTTATATGGATGCTACGATGTGGTCTCTCTTGAAGAGTTGTATTACCAAGAGAGTCAATAG TTGGTTTTCCAAATTTAACTAGTCATTTTAGGTGCTAATTATTTTAGCTTATTAGAACATAAGTTACTGTAGCTTATTAG CACATAAGTTTTTGTAGATATGATCGCAGTATTGTTTGTTTTATTCGATTATCAAGGTTTAATGGAATCAATATATTCCA AAGTTGCTTGTTTTTCATTCATGCAATATCTGTAACCATGTTCAATACTTTTCATGTCAAGTTTGCAATGTTGTGAGTTC TCTCAGCTTTATAATCTACTGTTTGACGGTTCAACAATGTTTATTATATTTTAATTGGGATTGATGGATTAACTGAGCTG GTGTTTACTTGCTGGTTTCTGCCACTGTCTCCAAAGTTTCTTTGTTCTGGGGTGGATGTGTCATGCTATGAGAACACATT TGCTGTAGTTTCTTTTAACATAGCGAGATTGTATCTTTGATGGTGATTGGTATGTAATTAGGCAGGAATGATATGAGGCA AATAATGTTGCAACTAAATTATTTCTTCTCATCTGTATCTAGTGATGGAGCCACCGTGTAAAAGTGGCAAATTTGGTTAA GCTTATTGCACAGCGAGTGAGTATCTTACTATCTGTTGGATTTGGAGTGTTGTTCTGTTTTCTGCTATATCTATCTTTGG ATTAACACGTTGTGAAATTGTTTTCACATGGTGGATGAATTTGATAGAAGATGATTGAGGTTGGAGAAGGAAGCTCCATT GAGAGGATGGGTGCTTGATAAAAGGGCAAGAGCCTGATAGATAGATGGGAAATCATGTGCTAGTAATAGTGAGGTTGTTG GTAGTAGTCAAATTGCCACTTTCAATTTTTAATTTGAGTTATTTGTATTTTATGCGCACCTTTTTCGCATCCAGACCACA TATTTGGTTATATGAGTATACCAGTGACTGTAGTAGCACAAGTAAATACTGTCATGCGTGTTCTGTTCGTTCTTTAAATC ATTGATAATCAGGCAGGTTTAGCAAACAACAGCAAAGAGAGGTCTGGTTGAAGCACCAAAACTGATCCACAAAATGTAGG AGAAGATTCAGCTTAACTAGTAGACCTGAGTTCAAATCTTATGGATGCAGTTGCATTGAATATTTGCATTTTGCAGGCAG AGCTTTACTGTAGTTGTAGTATTACATGTCTTGACTCTTGAGCGCGATTCCTCCACTGAAGAATGCTTGTGATTTAGATA AAATAATTACTTCATAATAGCCAACAACTCAACTAAGTGCTTGTTTGGTTATACCTCATTCAAGTCTGGAAGAAATTTAA CTGTATTAGGTTAGTCTGTTAAATGTTTGAGTCCCACTTTAAACTTTGCGTTTGAAGTACAACTTTATTGCATTTACTTG TATTCTTGTAATGATAAATTCTTCAGTTTAAGTGGACAACAATGAAGAACAAAACAACAATAAGACAAAAGTCTTATCCA GTAAGTGATGTGGGCCGTATGAATCATCTAACACCATGGCACTTGATCAAAAAATAAATTGAGACA 

CDS sequence (LotjaGi4g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGAGATTCATGCGGCGGAGGGTCAGCTCAACGGCGCCGGAAACCTAATTCTGAACTCCTTGGAACCCATCGGAAC CAAGCGCCAGAGGAGGCCTAGCGTCCGATTAGGCGACATCGGCGGCGACCAACCGCACGAATCCCACCACCGCCGAAGCA CCAGCAGCAAGGGGTGGAAGCTCGGCTTCGACCACCGCAAGGAAAAGGATTCCACCGCCGCTAACCCATCATCAGGTAAT AAACCCTCCAAGACTCGACCCTTAACCAATTTGACCTCCGTCGCCGACTTCAATGAAACCCTAGACGGCGACGAGAGGGA AGGGAACAACATCGACAGCGTCGCGATTGGTAGCTGGAAGGTGAAAGAGTCCAAGAAGAGGGCCACCAAGAGGGTCAGAT CGAGTTGGGTCTCGAGAATCGAGGATGGTGGGGGCGGTGGTGGTGGTGGTGAAGGGGAGGAAAAGTACAGTGGCGGCGAT GATGATGTGGATGATGGGTATCGGGAATTTGATATGGAGAATTCGGATTCTCTGTTGAAAGAACAGAGCCCTATTCAATC TATGGAGAATTTGGGGGTTGATGGGCATAGGAGGTCGTTTAAGGGTAGTAGGGATCACCATGATGGGATTGAGCTATCTG GGCCTTCTGATACTGATGCAAGGGATTGGAAGTGTGGAGGGACTAGTGGTGGTGATAGGAATGAGAATGGTGGTGGGAGG GTCAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGGTTGGGGTTAGGGCGTTATGCGCCGGTGTTTGAAGTGCA TGAGGTTGATGATGAGGTTTTGCCAATGTTGACACTAGAGGATCTCAAAGATATGGGGATTAGTGCTGTTGGATCCAGGA GAAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGCTTCTCCTGA 

Protein sequence (LotjaGi4g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEIHAAEGQLNGAGNLILNSLEPIGTKRQRRPSVRLGDIGGDQPHESHHRRSTSSKGWKLGFDHRKEKDSTAANPSSGN KPSKTRPLTNLTSVADFNETLDGDEREGNNIDSVAIGSWKVKESKKRATKRVRSSWVSRIEDGGGGGGGGEGEEKYSGGD DDVDDGYREFDMENSDSLLKEQSPIQSMENLGVDGHRRSFKGSRDHHDGIELSGPSDTDARDWKCGGTSGGDRNENGGGR VRSGEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGKGFS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 2 308 307 6.6E-126
PANTHER 2 308 307 6.6E-126
MobiDBLite 22 110 89 -
MobiDBLite 29 72 44 -
MobiDBLite 73 97 25 -
MobiDBLite 123 169 47 -
MobiDBLite 194 243 50 -
MobiDBLite 194 218 25 -
SMART 240 306 67 6.9E-13
ProSiteProfiles 243 306 64 14.852
SUPERFAMILY 245 303 59 6.46E-16
Pfam 248 303 56 1.5E-13
CDD 248 302 55 1.26904E-16
Gene3D 248 305 58 6.2E-18

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0420200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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