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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0420200 |
| Transcript ID | LotjaGi4g1v0420200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9IA00|BIC1A_XENLA Protein bicaudal C homolog 1-A; TrEMBL-Plants: tr|G7LI38|G7LI38_MEDTR SAM domain protein; Found in the gene: LotjaGi4g1v0420200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79554719..79557984) extracted from Lotus japonicus Gifu genome v1.2.
GAACAAATAAAATAAAATAAAACAAAACAAACCCTTTCCAGTTTCCACTCACAATCCAAGAACACAAATAAACACACCAT ACATACCCACTTTCTCTGTTACTCTGCTTCTACCCACTCCATCACTCTCCCAAACTCAAACCCATTAATTCTGAACGGAT TCCAAGTATTGGAATGGCTGAGATTCATGCGGCGGAGGGTCAGCTCAACGGCGCCGGAAACCTAATTCTGAACTCCTTGG AACCCATCGGAACCAAGCGCCAGAGGAGGCCTAGCGTCCGATTAGGCGACATCGGCGGCGACCAACCGCACGAATCCCAC CACCGCCGAAGCACCAGCAGCAAGGGGTGGAAGCTCGGCTTCGACCACCGCAAGGAAAAGGATTCCACCGCCGCTAACCC ATCATCAGGTAATAAACCCTCCAAGACTCGACCCTTAACCAATTTGACCTCCGTCGCCGACTTCAATGAAACCCTAGACG GCGACGAGAGGGAAGGGAACAACATCGACAGCGTCGCGATTGGTAGCTGGAAGGTGAAAGAGTCCAAGAAGAGGGCCACC AAGAGGGTCAGATCGAGTTGGGTCTCGAGAATCGAGGATGGTGGGGGCGGTGGTGGTGGTGGTGAAGGGGAGGAAAAGTA CAGTGGCGGCGATGATGATGTGGATGATGGGTATCGGGAATTTGATATGGAGAATTCGGATTCTCTGTTGAAAGAACAGA GCCCTATTCAATCTATGGAGAATTTGGGGGTTGATGGGCATAGGAGGTCGTTTAAGGGTAGTAGGGATCACCATGATGGG ATTGAGCTATCTGGGCCTTCTGATACTGATGCAAGGGATTGGAAGTGTGGAGGGACTAGTGGTGGTGATAGGAATGAGAA TGGTGGTGGGAGGGTCAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGGTTGGGGTTAGGGCGTTATGCGCCGG TGTTTGAAGTGCATGAGGTTGATGATGAGGTTTTGCCAATGTTGACACTAGAGGATCTCAAAGATATGGGGATTAGTGCT GTTGGATCCAGGAGAAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGCTTCTCCTGAGCTTTTACTTGTTTTTTTTC TACAGTTACGGAATGTAGCAGTGGGAGAGGAGGAGAGGATTCTCAGCCATAGCAAATTCAGATGAGTATGTCTGAACTGA GATATAGCATGTTTCTCCTGTGACTTTTTTTAGGCTTGGAATCGTTAGGTCCTCACATGTTCTTATTTGAGAAACATCTT TTTGAAATCTAGTGCAAGTACATATGACTCTGCAAATTTTGTTGGAGCATTTTGTTGTCTTTCTGAAGTAATTCCAGTTG TATTGTTATCAATTAATAACTTGAAAGGAGTAATACGAGGAAGAAAGGAACACAATTATGCATTTGGAAAGTTTTTGCTT AAATAAACTGGAAATGCTGTTAATTTCTTCTTTCCATCCATTGGAATACCATCTATACAGCTGTGTAGTCTTCTTGAGAA ATTCTTGTGTTGACCTTCTATTCAGAAGTTGTGTAGACTAAAGTTTTGATCAATCAACTAGCAACACATCATAGCCCTTG GGTCATGTAATTGTTGTACTTTTGAAGTGATATAGTATCAATTGTTGATTGGTTTGGCTTGCACAACTTGCGAGAACTTT ATCTATACGAGTCCCTCAGTTTATATGGATGCTACGATGTGGTCTCTCTTGAAGAGTTGTATTACCAAGAGAGTCAATAG TTGGTTTTCCAAATTTAACTAGTCATTTTAGGTGCTAATTATTTTAGCTTATTAGAACATAAGTTACTGTAGCTTATTAG CACATAAGTTTTTGTAGATATGATCGCAGTATTGTTTGTTTTATTCGATTATCAAGGTTTAATGGAATCAATATATTCCA AAGTTGCTTGTTTTTCATTCATGCAATATCTGTAACCATGTTCAATACTTTTCATGTCAAGTTTGCAATGTTGTGAGTTC TCTCAGCTTTATAATCTACTGTTTGACGGTTCAACAATGTTTATTATATTTTAATTGGGATTGATGGATTAACTGAGCTG GTGTTTACTTGCTGGTTTCTGCCACTGTCTCCAAAGTTTCTTTGTTCTGGGGTGGATGTGTCATGCTATGAGAACACATT TGCTGTAGTTTCTTTTAACATAGCGAGATTGTATCTTTGATGGTGATTGGTATGTAATTAGGCAGGAATGATATGAGGCA AATAATGTTGCAACTAAATTATTTCTTCTCATCTGTATCTAGTGATGGAGCCACCGTGTAAAAGTGGCAAATTTGGTTAA GCTTATTGCACAGCGAGTGAGTATCTTACTATCTGTTGGATTTGGAGTGTTGTTCTGTTTTCTGCTATATCTATCTTTGG ATTAACACGTTGTGAAATTGTTTTCACATGGTGGATGAATTTGATAGAAGATGATTGAGGTTGGAGAAGGAAGCTCCATT GAGAGGATGGGTGCTTGATAAAAGGGCAAGAGCCTGATAGATAGATGGGAAATCATGTGCTAGTAATAGTGAGGTTGTTG GTAGTAGTCAAATTGCCACTTTCAATTTTTAATTTGAGTTATTTGTATTTTATGCGCACCTTTTTCGCATCCAGACCACA TATTTGGTTATATGAGTATACCAGTGACTGTAGTAGCACAAGTAAATACTGTCATGCGTGTTCTGTTCGTTCTTTAAATC ATTGATAATCAGGCAGGTTTAGCAAACAACAGCAAAGAGAGGTCTGGTTGAAGCACCAAAACTGATCCACAAAATGTAGG AGAAGATTCAGCTTAACTAGTAGACCTGAGTTCAAATCTTATGGATGCAGTTGCATTGAATATTTGCATTTTGCAGGCAG AGCTTTACTGTAGTTGTAGTATTACATGTCTTGACTCTTGAGCGCGATTCCTCCACTGAAGAATGCTTGTGATTTAGATA AAATAATTACTTCATAATAGCCAACAACTCAACTAAGTGCTTGTTTGGTTATACCTCATTCAAGTCTGGAAGAAATTTAA CTGTATTAGGTTAGTCTGTTAAATGTTTGAGTCCCACTTTAAACTTTGCGTTTGAAGTACAACTTTATTGCATTTACTTG TATTCTTGTAATGATAAATTCTTCAGTTTAAGTGGACAACAATGAAGAACAAAACAACAATAAGACAAAAGTCTTATCCA GTAAGTGATGTGGGCCGTATGAATCATCTAACACCATGGCACTTGATCAAAAAATAAATTGAGACA
CDS sequence (LotjaGi4g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGATTCATGCGGCGGAGGGTCAGCTCAACGGCGCCGGAAACCTAATTCTGAACTCCTTGGAACCCATCGGAAC CAAGCGCCAGAGGAGGCCTAGCGTCCGATTAGGCGACATCGGCGGCGACCAACCGCACGAATCCCACCACCGCCGAAGCA CCAGCAGCAAGGGGTGGAAGCTCGGCTTCGACCACCGCAAGGAAAAGGATTCCACCGCCGCTAACCCATCATCAGGTAAT AAACCCTCCAAGACTCGACCCTTAACCAATTTGACCTCCGTCGCCGACTTCAATGAAACCCTAGACGGCGACGAGAGGGA AGGGAACAACATCGACAGCGTCGCGATTGGTAGCTGGAAGGTGAAAGAGTCCAAGAAGAGGGCCACCAAGAGGGTCAGAT CGAGTTGGGTCTCGAGAATCGAGGATGGTGGGGGCGGTGGTGGTGGTGGTGAAGGGGAGGAAAAGTACAGTGGCGGCGAT GATGATGTGGATGATGGGTATCGGGAATTTGATATGGAGAATTCGGATTCTCTGTTGAAAGAACAGAGCCCTATTCAATC TATGGAGAATTTGGGGGTTGATGGGCATAGGAGGTCGTTTAAGGGTAGTAGGGATCACCATGATGGGATTGAGCTATCTG GGCCTTCTGATACTGATGCAAGGGATTGGAAGTGTGGAGGGACTAGTGGTGGTGATAGGAATGAGAATGGTGGTGGGAGG GTCAGGTCTGGTGAAGATGGGGTTAGGATTTGGCTCAATGGGTTGGGGTTAGGGCGTTATGCGCCGGTGTTTGAAGTGCA TGAGGTTGATGATGAGGTTTTGCCAATGTTGACACTAGAGGATCTCAAAGATATGGGGATTAGTGCTGTTGGATCCAGGA GAAAAATGTACTGTGCTATTCAGAAGCTTGGAAAGGGCTTCTCCTGA
Protein sequence (LotjaGi4g1v0420200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEIHAAEGQLNGAGNLILNSLEPIGTKRQRRPSVRLGDIGGDQPHESHHRRSTSSKGWKLGFDHRKEKDSTAANPSSGN KPSKTRPLTNLTSVADFNETLDGDEREGNNIDSVAIGSWKVKESKKRATKRVRSSWVSRIEDGGGGGGGGEGEEKYSGGD DDVDDGYREFDMENSDSLLKEQSPIQSMENLGVDGHRRSFKGSRDHHDGIELSGPSDTDARDWKCGGTSGGDRNENGGGR VRSGEDGVRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGISAVGSRRKMYCAIQKLGKGFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 308 | 307 | 6.6E-126 | – | |
| PANTHER | 2 | 308 | 307 | 6.6E-126 | – | |
| MobiDBLite | 22 | 110 | 89 | - | – | |
| MobiDBLite | 29 | 72 | 44 | - | – | |
| MobiDBLite | 73 | 97 | 25 | - | – | |
| MobiDBLite | 123 | 169 | 47 | - | – | |
| MobiDBLite | 194 | 243 | 50 | - | – | |
| MobiDBLite | 194 | 218 | 25 | - | – | |
| SMART | 240 | 306 | 67 | 6.9E-13 | ||
| ProSiteProfiles | 243 | 306 | 64 | 14.852 | ||
| SUPERFAMILY | 245 | 303 | 59 | 6.46E-16 | ||
| Pfam | 248 | 303 | 56 | 1.5E-13 | ||
| CDD | 248 | 302 | 55 | 1.26904E-16 | – | |
| Gene3D | 248 | 305 | 58 | 6.2E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0420200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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