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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0421100 |
| Transcript ID | LotjaGi4g1v0421100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G71210.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210; TrEMBL-Plants: tr|A0A1J7HUC0|A0A1J7HUC0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79621438..79624549) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACACTCAACAAGGTTAGAAGTATAACTTGGGTAAATGATAACTATTGGATTGAATTTACCAAGATCAATAGTAGA TTTGACCCTTTCATTCAACCAAAATCTTAAACCCCACAAAAACCCAGACACAAACACAGAATGCAATTGCAATGGCAGCA TCATCTTAGTTTGTCAGAAGAGAAACAAGATCCATTACATTTTTCCAACCAAGATCCCCATTCCCATGATGCTATCAACA CTCAAACATCATCATCATGTCACCAAACACAAACCCAATTCTCTCTTCTCTTCCATTCTCACACTCTTCTCCAACAATTG TTCTTCTCTTTCACCCTCATCATCTTCATCGTTTCCACCTCCCTCCTTCGCCATCTCCAAAACCGACGTCGCCGACACCA TCAACACCTGGTTCACAACCCGCCACCAATCACAGGACCCTCTCCTCATCCGCATCTACAACATCCTCTCCTCCGACGAC GACTTCTCCGCCGCACTCTCCGCACTCTCCCTCCCCCTCTCCGAAACCTTCGTCCTCCGCGTCCTCCGCCACGGCGGCGA CGACGGCGACATCCTCTCATGCCTCAAATTCTTCGACTGGGCCGGCCGCCAGCCACGGTTCTACCACACCCGCACCACCT TCGTTGCCATCTTCCGCATCCTCTCGTGCGCCAGGCTCCGGCCGCTTGTCTTCGATTTCCTCCGCGACTTCAGGAGTTGC AGCTTCCCCCACAGGGCTCGCTACCACGACACCCTCGTCGTCGGATACGCCATTGCTGGGAAACCTGACATTGCACTCCA CCTGCTCGGCAGAATGCGCTTTCAGGGTTTGGACTTGGATGGGTTTGGTTACCATATTCTGTTGAATTCTCTTGCTGAGA ACAACTGTTACAATGCATTTGATGTCATTGCCAACCAGATTTGCATGAGGGGCTACGAGAGCCACATGACCAATGTCATT GTTATTAAGCATTTGTGCAAGCAAGGTCGGTTGGAGGAGGCGGAAGCTCATCTCAATGGCTTGGTGGGTAGTGGAAAGGA GTTGCACAGGTCTGAGTTGAGTTTTCTTATTGGTGTATTGTGTGAGAGTAATAGATTTGAGCGTGCTGTTGAGTTGGTTA GCGAGTTTGGGACATCGCTTCCATTGGAGAATGCTTATGGTGTGTGGATAAGGGGTCTTGTGCAGGGTGGGAGATTGGAT GAAGCACTTGAGTTTTTTAGGCAGAAGAGAGATTCTGAAGGGTTTGTTCCTTGCAAGGTTCGGTATAACATTTTGATTGG CAGGCTTTTGAGAGAGAACCGGCTTAAAGATGTATATGAATTGTTGATGGATATGAACGAGACTTGCATTCCACCTAATA TGGTTACCATGAATGCTGTCTTGTGCTTTTTTTGTAAACTGGGGATGGTCGATGTTGCACTAGAATTGTTCAATTCCAGG TCTCAGTTTGGACTGTCTCCCAATTACATGGCTTACAAGTATTTGATACTTACTTTGTGTTGGGATGGGTGCCCTAAGGA GGCATACAGAGTGTTGAGAAGTTCTTCTGGTACAGGTTATTTTCCTGATAGGCGGACCTTTTCAACGCTTGCCAATGCTT TATGTAGAGAGTGCAAGATTGATGAGATGTGGGACTTGCTCGATTTTGCCTTAGAAAGGAGATTTATGCCAAATTCTTCC ACATATTCAAGGTTTGTATCGGCTCTATGCCGAGCTGGAAGAGTGGAAGATGGTTATTTGATGCGTGGGGACCTTGACAA AGTAACTGCTAGGTTTTCGTACGCCAAGATGATTATGGGTTTTATCAAGTCAAATAGGGGAGACATTGCTGCTCGTCTTC TTGTTGAAATGAAAGAGAAGGGTTATGAGCTAAAGCGTTCCTCGTATAGACATGTTCTTCATTGTTTACTTCATATGGAT AATCCAAGAACACGTTTTTTCAATTTATTGGAGATGATGACTCATGGTAAACCTCATTGTGATATTTTCAACAGTTTCAT TGACGGAGCTATGCATGCCAATAAGCCTGATTTGGCTAGGGAAGTATTTGAGTTGATGCAAAGGAATGGCATCATGACCA ATGCGTCTTCTCAAATCCTTGTAATGAAGAGTTATTTTAGAAGTCGAAGGATTTCTGATGCTCTGCGTTTCTTTAATGAT ATCAGGCACCAGGTTGTGGTGAGCACAAAATTGTATAATCGCATGATTGTTGGTCTCTGCAAGTCTGACAAGGCAGACAT TGCACTTGAGCTCTGTTTTGAAATGTTAAAAGTTGGATTAAATCCGAGCATTGAATGCTATGAGGTTCTTGTGCAGAAGC TTTGCTCATTGAAAAGATATTATGAAGCAGTAAATCTTGTTAATGTGTATGAGAAAGCAGGACGTCGGTTAACTTCTTTT CTTGGCAATGTACTTCTTTTTCATTCAATGATATCACCGGAAGTCTATCATTCATGTGTAGATTTAAGAAGAGAGAAAGA GGGGGAGTTTCTTGATAGTTCAATGCTGACCTTGATCATTGGTGCATTTTCTGGCTGTCTCAGAGTAAGCTATTCTATTC AGGAGTTGGAGGAATTAATAGCTAAGTGCTTTCCAGTTGACATTTACACCTACAATTTGTTGATGAGGAAACTAACTCAT CATGATATGGACAAAGCTTGTGAGTTGTTTGATAGGATGTGTCAAAGGGGTCTTGAGCCTAATCGTTGGACTTATGGACT CATGGCACATGGTTTCTCAAATCATGGCAGGAAAGATGAGGCTAAGCGATGGGTTCATGAAATGCTCAAAAAAGGATTTA ATCCACCAGAGAATACTAGAAATGTCATTTAAGGAGAATAAATTGATGTGCTGAAAAATGGGTCACTGGTAAGATATTAT ATTTAATTGATTTTTTTGCTAACTTCTAAATGTTAAATCTCGAGTGTAGAATTCCTGGACACCGGATTGCAAACTCAATG CAATGGAGTAAGAGTTGATGGTTATATTTTTAGAATACTAAAAATTCTTACACGACAAAAATTATTGAGGCTTTAAAGCT GAAATGTCATATTTGTAACTTGTAGTGTAATTTTATGAGTAATGATATATACACACCTCACTTTCTCTCCCA
CDS sequence (LotjaGi4g1v0421100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAACTATTGGATTGAATTTACCAAGATCAATAGTAGATTTGACCCTTTCATTCAACCAAAATCTTAAACCCCACAA AAACCCAGACACAAACACAGAATGCAATTGCAATGGCAGCATCATCTTAGTTTGTCAGAAGAGAAACAAGATCCATTACA TTTTTCCAACCAAGATCCCCATTCCCATGATGCTATCAACACTCAAACATCATCATCATGTCACCAAACACAAACCCAAT TCTCTCTTCTCTTCCATTCTCACACTCTTCTCCAACAATTGTTCTTCTCTTTCACCCTCATCATCTTCATCGTTTCCACC TCCCTCCTTCGCCATCTCCAAAACCGACGTCGCCGACACCATCAACACCTGGTTCACAACCCGCCACCAATCACAGGACC CTCTCCTCATCCGCATCTACAACATCCTCTCCTCCGACGACGACTTCTCCGCCGCACTCTCCGCACTCTCCCTCCCCCTC TCCGAAACCTTCGTCCTCCGCGTCCTCCGCCACGGCGGCGACGACGGCGACATCCTCTCATGCCTCAAATTCTTCGACTG GGCCGGCCGCCAGCCACGGTTCTACCACACCCGCACCACCTTCGTTGCCATCTTCCGCATCCTCTCGTGCGCCAGGCTCC GGCCGCTTGTCTTCGATTTCCTCCGCGACTTCAGGAGTTGCAGCTTCCCCCACAGGGCTCGCTACCACGACACCCTCGTC GTCGGATACGCCATTGCTGGGAAACCTGACATTGCACTCCACCTGCTCGGCAGAATGCGCTTTCAGGGTTTGGACTTGGA TGGGTTTGGTTACCATATTCTGTTGAATTCTCTTGCTGAGAACAACTGTTACAATGCATTTGATGTCATTGCCAACCAGA TTTGCATGAGGGGCTACGAGAGCCACATGACCAATGTCATTGTTATTAAGCATTTGTGCAAGCAAGGTCGGTTGGAGGAG GCGGAAGCTCATCTCAATGGCTTGGTGGGTAGTGGAAAGGAGTTGCACAGGTCTGAGTTGAGTTTTCTTATTGGTGTATT GTGTGAGAGTAATAGATTTGAGCGTGCTGTTGAGTTGGTTAGCGAGTTTGGGACATCGCTTCCATTGGAGAATGCTTATG GTGTGTGGATAAGGGGTCTTGTGCAGGGTGGGAGATTGGATGAAGCACTTGAGTTTTTTAGGCAGAAGAGAGATTCTGAA GGGTTTGTTCCTTGCAAGGTTCGGTATAACATTTTGATTGGCAGGCTTTTGAGAGAGAACCGGCTTAAAGATGTATATGA ATTGTTGATGGATATGAACGAGACTTGCATTCCACCTAATATGGTTACCATGAATGCTGTCTTGTGCTTTTTTTGTAAAC TGGGGATGGTCGATGTTGCACTAGAATTGTTCAATTCCAGGTCTCAGTTTGGACTGTCTCCCAATTACATGGCTTACAAG TATTTGATACTTACTTTGTGTTGGGATGGGTGCCCTAAGGAGGCATACAGAGTGTTGAGAAGTTCTTCTGGTACAGGTTA TTTTCCTGATAGGCGGACCTTTTCAACGCTTGCCAATGCTTTATGTAGAGAGTGCAAGATTGATGAGATGTGGGACTTGC TCGATTTTGCCTTAGAAAGGAGATTTATGCCAAATTCTTCCACATATTCAAGGTTTGTATCGGCTCTATGCCGAGCTGGA AGAGTGGAAGATGGTTATTTGATGCGTGGGGACCTTGACAAAGTAACTGCTAGGTTTTCGTACGCCAAGATGATTATGGG TTTTATCAAGTCAAATAGGGGAGACATTGCTGCTCGTCTTCTTGTTGAAATGAAAGAGAAGGGTTATGAGCTAAAGCGTT CCTCGTATAGACATGTTCTTCATTGTTTACTTCATATGGATAATCCAAGAACACGTTTTTTCAATTTATTGGAGATGATG ACTCATGGTAAACCTCATTGTGATATTTTCAACAGTTTCATTGACGGAGCTATGCATGCCAATAAGCCTGATTTGGCTAG GGAAGTATTTGAGTTGATGCAAAGGAATGGCATCATGACCAATGCGTCTTCTCAAATCCTTGTAATGAAGAGTTATTTTA GAAGTCGAAGGATTTCTGATGCTCTGCGTTTCTTTAATGATATCAGGCACCAGGTTGTGGTGAGCACAAAATTGTATAAT CGCATGATTGTTGGTCTCTGCAAGTCTGACAAGGCAGACATTGCACTTGAGCTCTGTTTTGAAATGTTAAAAGTTGGATT AAATCCGAGCATTGAATGCTATGAGGTTCTTGTGCAGAAGCTTTGCTCATTGAAAAGATATTATGAAGCAGTAAATCTTG TTAATGTGTATGAGAAAGCAGGACGTCGGTTAACTTCTTTTCTTGGCAATGTACTTCTTTTTCATTCAATGATATCACCG GAAGTCTATCATTCATGTGTAGATTTAAGAAGAGAGAAAGAGGGGGAGTTTCTTGATAGTTCAATGCTGACCTTGATCAT TGGTGCATTTTCTGGCTGTCTCAGAGTAAGCTATTCTATTCAGGAGTTGGAGGAATTAATAGCTAAGTGCTTTCCAGTTG ACATTTACACCTACAATTTGTTGATGAGGAAACTAACTCATCATGATATGGACAAAGCTTGTGAGTTGTTTGATAGGATG TGTCAAAGGGGTCTTGAGCCTAATCGTTGGACTTATGGACTCATGGCACATGGTTTCTCAAATCATGGCAGGAAAGATGA GGCTAAGCGATGGGTTCATGAAATGCTCAAAAAAGGATTTAATCCACCAGAGAATACTAGAAATGTCATTTAA
Protein sequence (LotjaGi4g1v0421100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITIGLNLPRSIVDLTLSFNQNLKPHKNPDTNTECNCNGSIILVCQKRNKIHYIFPTKIPIPMMLSTLKHHHHVTKHKPN SLFSSILTLFSNNCSSLSPSSSSSFPPPSFAISKTDVADTINTWFTTRHQSQDPLLIRIYNILSSDDDFSAALSALSLPL SETFVLRVLRHGGDDGDILSCLKFFDWAGRQPRFYHTRTTFVAIFRILSCARLRPLVFDFLRDFRSCSFPHRARYHDTLV VGYAIAGKPDIALHLLGRMRFQGLDLDGFGYHILLNSLAENNCYNAFDVIANQICMRGYESHMTNVIVIKHLCKQGRLEE AEAHLNGLVGSGKELHRSELSFLIGVLCESNRFERAVELVSEFGTSLPLENAYGVWIRGLVQGGRLDEALEFFRQKRDSE GFVPCKVRYNILIGRLLRENRLKDVYELLMDMNETCIPPNMVTMNAVLCFFCKLGMVDVALELFNSRSQFGLSPNYMAYK YLILTLCWDGCPKEAYRVLRSSSGTGYFPDRRTFSTLANALCRECKIDEMWDLLDFALERRFMPNSSTYSRFVSALCRAG RVEDGYLMRGDLDKVTARFSYAKMIMGFIKSNRGDIAARLLVEMKEKGYELKRSSYRHVLHCLLHMDNPRTRFFNLLEMM THGKPHCDIFNSFIDGAMHANKPDLAREVFELMQRNGIMTNASSQILVMKSYFRSRRISDALRFFNDIRHQVVVSTKLYN RMIVGLCKSDKADIALELCFEMLKVGLNPSIECYEVLVQKLCSLKRYYEAVNLVNVYEKAGRRLTSFLGNVLLFHSMISP EVYHSCVDLRREKEGEFLDSSMLTLIIGAFSGCLRVSYSIQELEELIAKCFPVDIYTYNLLMRKLTHHDMDKACELFDRM CQRGLEPNRWTYGLMAHGFSNHGRKDEAKRWVHEMLKKGFNPPENTRNVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 85 | 400 | 316 | 3.1E-92 | – | |
| Gene3D | 138 | 366 | 229 | 4.9E-12 | ||
| ProSiteProfiles | 232 | 266 | 35 | 7.311 | ||
| Pfam | 238 | 263 | 26 | 1.3 | ||
| ProSiteProfiles | 301 | 335 | 35 | 7.048 | ||
| ProSiteProfiles | 336 | 366 | 31 | 5.218 | ||
| Gene3D | 367 | 433 | 67 | 7.3E-9 | ||
| ProSiteProfiles | 369 | 404 | 36 | 8.659 | ||
| TIGRFAM | 372 | 395 | 24 | 0.0021 | ||
| Pfam | 373 | 395 | 23 | 0.016 | ||
| PANTHER | 391 | 567 | 177 | 3.1E-92 | – | |
| ProSiteProfiles | 405 | 439 | 35 | 8.133 | ||
| Gene3D | 434 | 500 | 67 | 1.3E-10 | ||
| Pfam | 439 | 487 | 49 | 3.1E-8 | ||
| ProSiteProfiles | 440 | 474 | 35 | 10.041 | ||
| TIGRFAM | 442 | 475 | 34 | 9.4E-5 | ||
| ProSiteProfiles | 475 | 509 | 35 | 7.202 | ||
| Gene3D | 501 | 576 | 76 | 5.8E-11 | ||
| ProSiteProfiles | 510 | 544 | 35 | 9.536 | ||
| Pfam | 513 | 536 | 24 | 0.65 | ||
| TIGRFAM | 513 | 545 | 33 | 3.9E-4 | ||
| ProSiteProfiles | 545 | 575 | 31 | 7.311 | ||
| Gene3D | 577 | 712 | 136 | 7.5E-17 | ||
| ProSiteProfiles | 577 | 611 | 35 | 8.923 | ||
| PANTHER | 579 | 790 | 212 | 3.1E-92 | – | |
| Pfam | 580 | 608 | 29 | 0.05 | ||
| ProSiteProfiles | 646 | 680 | 35 | 8.484 | ||
| TIGRFAM | 649 | 678 | 30 | 9.7E-5 | ||
| Pfam | 649 | 678 | 30 | 0.0012 | ||
| ProSiteProfiles | 681 | 711 | 31 | 6.555 | ||
| Gene3D | 713 | 781 | 69 | 3.9E-8 | ||
| ProSiteProfiles | 715 | 749 | 35 | 10.205 | ||
| Pfam | 719 | 746 | 28 | 0.0022 | ||
| ProSiteProfiles | 750 | 784 | 35 | 6.489 | ||
| Gene3D | 801 | 930 | 130 | 1.7E-19 | ||
| PANTHER | 843 | 926 | 84 | 3.1E-92 | – | |
| Pfam | 854 | 900 | 47 | 3.8E-9 | ||
| ProSiteProfiles | 854 | 887 | 34 | 9.514 | ||
| TIGRFAM | 856 | 888 | 33 | 3.1E-4 | ||
| ProSiteProfiles | 888 | 922 | 35 | 11.334 | ||
| TIGRFAM | 891 | 922 | 32 | 3.5E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0421100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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