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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0421900 |
| Transcript ID | LotjaGi4g1v0421900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle subunit SRP68; TAIR: AT5G61970.1 signal recognition particle-related / SRP-like protein; Swiss-Prot: sp|Q8BMA6|SRP68_MOUSE Signal recognition particle subunit SRP68; TrEMBL-Plants: tr|G7LIT8|G7LIT8_MEDTR Signal recognition particle subunit SRP68; Found in the gene: LotjaGi4g1v0421900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79708674..79715822) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAAGTCATCTCTCTTCATCGGTTTCTTCCTTGCACAGTTGTGTTCCGTTCATTCTCGGCGATTTCTGTCACGGCTTA CATTCGCTGCAGTAACCTCTGTGCTTCAATCCTCTCACGAAGCTCGAAACCCTCTCTCACTCGCCAGGTTTGTCTCATTT CCATTATCTACTTCGAGATCTATCACAGCGTTGTGAATTCTCATCCAATGAAGCTTCAATTTGATTATATGCATCGTATC TACCTCCAACACTGGCTCTGATTCGATTTTTGTTGTTTTATGCTTAATGATTGGATGAATGTTCTGAACTAACGTAGATT CGATGGTGAAGGAGAATCCAGTGTCCGCTATGGAAATCGATGATCAGAAATCGACGAATTCAGATCAGATCGTTCCCAAG TTCTCCATTCACGGTTTGTCTCATCCTTCATCGTTCAATGCTGTTCAATTCGCGTTCATATTCTTCTTGCTGATGAAATT GAAAACTCAGCATTTAGTATTGAAACTTCGATTTTGGTGTAATTGATGTTTTTTTTTATCTTCTTAAATTTCCAGTACTG CAGCTCTTGAAATCTGCGCAAATGCAGCATGGTTTGCGTCATGGAGATTACACTCGCTATCGGTATGTATGTATTTCGAT CGTCTCTAACATGCTATCAAATAGCAAATTATGTTATTTTCCCAGCTAATTCATAGGAGAGGCACAATTTACTACTTCTA TAGCTGAAACAGCTGAACTTTACTAGGGAAAATGGCATGGGGCATGTTAGCGTTGTCGTTTTTTGAAAATTCAGTGGGTA AAGGGTTGAAATATCTGTAGATTGGTAATTGATGTGCTTTTTTTCCTTTACATTGTAGGAGGTATTGCACGGCTCGTTTG AGGAGGTTATATAAGTCGTTGAAGTTTACCCATGGTCGCGGCAAATATTCAAAAAGAACCATATCTGAGTCCAATGTCAC TGAAGTAAGGTATGCTTTGCTTACTGTTTAGCTCTTCTCTTACACTGTAGTTCTGAAACTTTTTGGTGGTGGTTGACTTA TTATGAATTTGTGTTATAGAAGTAAAGGATAGTAGAATGAATGATTGGTTGCATGTATTTTGGTCGGTTTATCATCTATG TTGCTGTTGAATTATTTCTCGAATTGAAGTGATGCGGTAATTCCTGAATTATGTAGCGGTTCGTAATACCCACATTCATT AGCCAACCGTGATACCGTTTAATGATCCAAAAAATCACGTAACAAAACATGGAACAGCTAAATGCCCATGAGGCAATCTT AAACCTATTTAAAGCCTAAGATAACAAAGATTAAGGCATCTTCACTCTTTCTCTAATTCTGAGGGCTAGGCTGTGTGTTG GTCACTGAGTTTGACCCCCTGGAGTTTGGAGATAACAGGTATCATTATGTGAATCTGAAACCATCAATAAGTATTAACCA TCACTTAGACCTTGCTTTGTCTCCTTTCTGCTTGCTTTATTTTTGTTTTAATTTTTTTTTACTACTTTTGGGAATTGGAA AATGAACATTTTTCTGTCTAGCAACCTTTTTACTTATCTATGCAGTTTAACATTGTAAGTTATTTGATTTCAATTCAGGT TTCTTCATGTGATTCTCTATTCCGCAGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAGCTTCCAAATGGGCCAAAT GCACGCCAACGTATCTATTTGATTGGCAGGTTGCGGAAGGCAGTAAAATGGGCTACTTTGTTTTCACAATTGTGTGCAGT CAAGTCAGATTCTAGAACATCTTTGGAAGCTGAGGTGTGTCTTTTAATCATTAATTTCAACAAAAACATTTAGAAGAAAA GCTTTCCAAAATGCAAATGCTTTGATAGCTTTACTCTTTTTTATTGTTAATCTATAGCAGATAACTGTTTTTCTTTGTTT ATTTACTGATTTTTAGGCTTATGAATCCTATATGAAGGGGAGTTTGTTGTTTGAACAAGATCAGAATTGGGACGTGGCGC TAAAGCACTTCAAAAGTGCTAGGTACATCTACTCTGTTTCCTTGATTTATACATACTTCTTTGAAAAGAAGAAGAGACCA TGCTCTTTTTCATAAAACATAAAAAAGGAACATGATGATTATGCTTGGTTAAATCATAAATGAGATCTTTGCATACATAA TTTGAAAATCTATGCCTTTTTGTGGCAAAAAATTGTTTAGTTTGTGTGATCTAGCACATTAGCTTTTGTGATGCTTCGTT CTTTTTGCTCCCCTTGCTCAAGTTTTCAACCTTGTCCATATTTAACAGGGCCGTATATGAGGAATTAGGCAAATATGGAG ATCTGGATAACCAAGTGATGTGTCGTGAGCGAGTTGAGGAACTCGAACCTAGTATCAGATACTGCCTTCACAAAATTGGC GAGTCAAATCTACAAGCCTCTGAACTGTTAAATATTGGTGATATGGAAGGGCCTGCATTAGACCTTTTTAAAGCTAAATT AGAGGTTGGTGTAGATTTCATTTATATATGTTACTGGAAAATAGTGGAAACCAGTAATGTAATATGCATATCTTTGCAAA TCAGTATACTCAAATTTTTCTTATAAGGACGTGTTGCATTGAGATAATCTTTCATTTTCGTGCCTATTCAAAAAGGGAAC ACAATCATACATGCATACATAAGATGATCTTTTTAATTTAACTAAACCTTTTGAAATTCTAAAACTCCTAATGTTTCATT TCCATGCAAGAGTCTTAATCAGTTCAGTTACTTGAATCAATAGGCTGCTATTGTGATAGATAGCTTCATGCATGTCCTTT CTATGATAGAAATACATAATTGAATAGCGTTTGTTCCAGGCTGTCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCTT GACTGAATTCCATTGGCTTGGCCATAGATTTCCAATTTCAAATGCCAAAACAAGGGTTGCCATTTTGAAAGGTTGGTAGC CTTCTTCTCATATAAATTAGAGGGCTGGAAGAAAAGTAATGTTATCTATTGATTAAACTTCATAATCATATTTCCAAGTC TTAACCTCATGCTTTGTCCCATGTGAATCCACCTACTTGCGTCTTTGACCACTCTGCTAAATGACATTTACTAGTGTGGC TAGGAATTCTTTTTCTGTGTTTTCTTCCATGAGCGTGCTATTATAATTAATTGATTGCTAATTTCCATAGACTAGATGGC ATATATTTTTATCATTTAGAACTTAGCCTTTTCCCTCTTGTGGATGTTTGTAATGCCAGTTCGGGATACACAATTTCTTA CATTAAAATATATGCTGAAAATGTTTGGTTGATGAGCTTGTTAGTGCAATGCTGGGTTAATATTGTAGTATTTTTTTAGT AATATACCTGACATTCATTATAGTAAATCTGCTGACCAAGTCCTTGGGATAATAGTTTGGTAATATACTTAACTTATTTA ACATATGGTAACTTTTATTTTTTACGTAGTTCAGCTTAGGTAGTTCGAACTAACTATATAAAGTAATGTTTCTATCTGAA TAATTTTCTCAGCTCAGGAGCTGGAGAAAGATATACATGGTCCCTCGGCAGATTCTATTCCAGCAGACAAAAGATTGGTT ATTTTTGACAAAATCTTTTCCGCATATCATGATGCTAGAGGCTTTATTCGGGCTGATTTGGTAATGGAAATTACTTGATG TTCTTGCTGTTAATTATGATTTACCAGCAAATCTTTTTACTAGTTATACAAAGTTACTAATACTTTTCACGATAGATTCT CTATAATACCCTGTTTTTCTCAATCTATATTTGGTCTTTTGTAAATTTTAGGCTACTACAGGAAGTGCTGAAAGTGTAAA AGATGATCTGAATGGCCTTGATAAGGCTGTCAGTGCTGTCTTAGGAGAAAGAACCATTGAGCGCAACCTCTTGTTGGTTA AGGTAGCGAAGAGTAAACTTGCAAGGCGTAGTGATGATAAAAATGAAAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTA TATGATCTCTTGCTACAGGTGCCCATATATTTGTTTGTTAACTTGCATTAATTGAACACATTTCTTTGTGATCCCCCGAG CTGCTGCATTTATTTTTTGAGGTATTAGCTCCTCAAATGAAGTGACAATGCTTGCATGGATCATGTATTTGGCAGAATAC AGCTGATCTATCAGATTTAGTCAGTTCTGGAAGGGACAGAAACTCAGAAGAAGTTAACTTTGCTGAAGTGTGTTCGTGCA AAAGTTTGGCTTTTCGAGCTGAAAGGTTTGCTTCTTAGAACCGAATATTTTCTTCCTGATCTTAGAAATATCCTTGCTTT CAGTTTGGTGCTTACAAACTGCACACGCGCACATGTTATTTTCAGCTTTTTCTGAAAGCTAAATTTTTTCACTTTCTATT CTAAAAGAAATCTTTGTACCAATAGCACTGAAGAAAGTTCATTAAGAACATACAGATTACTGTTGAGCTGCGGAGCTTTT CTGTTCATCCCATTGACAAATATGCTCATTGATGACCACTCACTTATTTTCCTTATGCTTTTAATAATCAGAGCTTTCTC TGTAGTTTGAATGTCTAGGATTTGATTTGGTTTTTCCTCGAATGTGAAATTTCATATTCTTGGTTTTGGTTTTCCCTCTG AAAAACAGTTTTGACAGTTATTGCTTTAGTTATATGTCATAGATAGTTACATAGTTTTGTCATCCTTAGAGTTTTTTATT TTTATCTCAGCAGATGAACATAATTAGAAATAAATCCTAAAGTGGTTTACTTTTTAGTTAGCTACAGTGTGTGCAATTAC CACCTTTATTATTTGGTTAATGCCTAGATGTTTGTGTAATCAAGATTTAGTTTTTACCCTTCATTGAGGGCTCCAGGGAA AGGGCAGTTAAGTAGAAGGGTGATGATTTCTCGCTGCTGGTTCAGCCAAATGTGTATCTTGTTTTTGTAGAGACATTCCT ACCTGAACTAAAGGTACATGTGCTTATGACTTGTGTAGGTGCTTTTACGTTGCGAAGTCATATGGTGTTGCTGGAAAGAG GGCTGAAGCATATGCTTTGTATTGTCGTGCTCGAACACTGGCAGAAGATGCCCTAAGAAAGTTTCAAATGTTAGATGGTG ATAATAAGGTAATTTTAATTATTTTTCTTAAATCAGGTTTGAAGAACCTCACTGATCAATACCAGGGCCATCATCTGCAT TGTGATATTTTTTCTAATGAACCTCACTGATAATACCTTGGAACATCTTGGTAGACCTGAAATTTTGAATGTGGAATCCA ATGCCGTTGAAGGTAAAGAAGTAAAGAAAGCTCGTCTGTCTAATGATCTCCTTTGACTAGCCATAGGATACATAGATGGC AATTTATTGGTCTTGTGGCTTTCTCCGATGTACAACAGGCACAATAGGTTGCAATCTCTGAATCCTTGCCTAGTCTGAGA AGATCATTGTGCAAGTGGTTTTTTTATTTTTGTAAATTTCTTACTATGAAAAACAATTGACTTTACACTCAGAACTTCAG GTCTGCACAGTATTTCCATATTACTAATGTTTATTCTTTCATCTTTTTCTGGTAATATGTAAGATGAGAATGTGCTTCGT ATGTTGAAATTTTTGTATCGATCGAACCTTCGTGGGTTAATGGTATTTGGGGTAGGTTCATGTTTTAAGACTGGGATATG CTTGAGTACAAAAGAAGTTCACGTGAACTGATACAAATTGAAACATGGCACTGTGTAGTTAGTTTTTCAACTTTCATGTA TTGTCATTGTACATCCATCGTACAAAAAAACTTCATAATGTATAGTAGTATTGTTTAACATTCCCTATCAATAATTATCA AACCTCACATGATTTGATTGCTGATGTACATTCCTATAAATTTCCCCCTGATTTTTGGTTTGGCAGACTATGGTGAAAGA GCTAGAGGTCTTGTGCAATGAATGCCGCTCTAACAGTTGTATAGAGCACGCGTTGGGGATCATGGAGGAGAAGAAGGCTC AAGAGAATCTCTCCGAAGGGATCTCTAATATATCATTAACTGGAGCTGAGCGGGTACATAAGTTTCTACTTCTCATATGA TCTCAATATGGGGTGGTATTTGCATGAAACATTTATTCATATATTCTGACGTGTGTCTGCTTGTTTCAGTTGGAGAAATT CCTTCTTGAGAAACTTGATATCTATGAGTCTGCTGTGGGTGATTCAAATGTGAAACGTGCTCCCCGTATTGCAGCTTTCC CTCCAGCTTTCCAATCAATCTCCCGCAATCCTATTGTGCTGGATCTGGCCTATAACATGATTGAATTCCCATCTATCGAG AGTCGGATGAAGAAGGATAGAAAAGCTAAGGGTGGCTTTATCAGTAGAATATTTGGATGAGTTTATTTGGTTAGGTTTTT GGTTCTTCAGAATGAAGAATTCGTGACAACTAATCTGGAGGTTCCTTTTGTTGAATATTTTTATGAATTTTTGACATGTT GATATACAAATTTTGAGTGGTCTGTTAATTTGGAAATTTACAGCGGGAAGATTGATAAAACATTTTATATAAGTAGGACT GTATTCTACTTTTTGTAGCTGCGGTTATAATGTTTACAATAACTCCTCTTTTGAGCTCCAGAGCGTCTCTTTTCCATACT GGAAGCTCATGCTGCTGCTGGTCCAGCAGGTCGCGCCTCTGGTCTCTCCTCCCTTCTTAGGCCTCTCAAGCTTCTCCCAG GACATCCAATTCATCTTCCGAATAGTGACATCTCCTCCCCAGAAAAATTGATTAATCGTAAGCTGAACTACATTGCACAA AGTTTGTGGCAAAGCAAAACAGCTCATAATGTACGCTGGTATAGCCTGAACCACTGACTTGCAATAATTTGTTCTAGTGC TTCCTTTTCTTTTCTGCTCATCTTCACTTTTTTTTTCATTCTATTATGAAGTAACTATGTACAAGTTAGATTAGAAAATG TGTCATGAAAAAAAAAGGGCAGAACTTTTCATGTGAAGAATCTTAAAGGAACCTTAATGTTATCTTTGTGCGTTTATTTG ATCAATATAATCAGACACCGTAAACACAGCAACATGAAGTATTATAATGACTCTGGAATGTTGATTTAAAAAGAGGGAAG AAATTCAAGTAGGATATATAATGTTCTTG
CDS sequence (LotjaGi4g1v0421900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATCGATGATCAGAAATCGACGAATTCAGATCAGATCGTTCCCAAGTTCTCCATTCACGTACTGCAGCTCTTGAA ATCTGCGCAAATGCAGCATGGTTTGCGTCATGGAGATTACACTCGCTATCGGAGGTATTGCACGGCTCGTTTGAGGAGGT TATATAAGTCGTTGAAGTTTACCCATGGTCGCGGCAAATATTCAAAAAGAACCATATCTGAGTCCAATGTCACTGAAGTA AGGTTTCTTCATGTGATTCTCTATTCCGCAGAGAGAGCATGGAGTCATGCCATGGAGAAAAGGCAGCTTCCAAATGGGCC AAATGCACGCCAACGTATCTATTTGATTGGCAGGTTGCGGAAGGCAGTAAAATGGGCTACTTTGTTTTCACAATTGTGTG CAGTCAAGTCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAATCCTATATGAAGGGGAGTTTGTTGTTTGAACAA GATCAGAATTGGGACGTGGCGCTAAAGCACTTCAAAAGTGCTAGGGCCGTATATGAGGAATTAGGCAAATATGGAGATCT GGATAACCAAGTGATGTGTCGTGAGCGAGTTGAGGAACTCGAACCTAGTATCAGATACTGCCTTCACAAAATTGGCGAGT CAAATCTACAAGCCTCTGAACTGTTAAATATTGGTGATATGGAAGGGCCTGCATTAGACCTTTTTAAAGCTAAATTAGAG GCTGTCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCTTGACTGAATTCCATTGGCTTGGCCATAGATTTCCAATTTC AAATGCCAAAACAAGGGTTGCCATTTTGAAAGCTCAGGAGCTGGAGAAAGATATACATGGTCCCTCGGCAGATTCTATTC CAGCAGACAAAAGATTGGTTATTTTTGACAAAATCTTTTCCGCATATCATGATGCTAGAGGCTTTATTCGGGCTGATTTG GCTACTACAGGAAGTGCTGAAAGTGTAAAAGATGATCTGAATGGCCTTGATAAGGCTGTCAGTGCTGTCTTAGGAGAAAG AACCATTGAGCGCAACCTCTTGTTGGTTAAGGTAGCGAAGAGTAAACTTGCAAGGCGTAGTGATGATAAAAATGAAAAAG TCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACAGCTGATCTATCAGATTTAGTCAGTTCT GGAAGGGACAGAAACTCAGAAGAAGTTAACTTTGCTGAAGTGTGTTCGTGCAAAAGTTTGGCTTTTCGAGCTGAAAGGTG CTTTTACGTTGCGAAGTCATATGGTGTTGCTGGAAAGAGGGCTGAAGCATATGCTTTGTATTGTCGTGCTCGAACACTGG CAGAAGATGCCCTAAGAAAGTTTCAAATGTTAGATGGTGATAATAAGACTATGGTGAAAGAGCTAGAGGTCTTGTGCAAT GAATGCCGCTCTAACAGTTGTATAGAGCACGCGTTGGGGATCATGGAGGAGAAGAAGGCTCAAGAGAATCTCTCCGAAGG GATCTCTAATATATCATTAACTGGAGCTGAGCGGTTGGAGAAATTCCTTCTTGAGAAACTTGATATCTATGAGTCTGCTG TGGGTGATTCAAATGTGAAACGTGCTCCCCGTATTGCAGCTTTCCCTCCAGCTTTCCAATCAATCTCCCGCAATCCTATT GTGCTGGATCTGGCCTATAACATGATTGAATTCCCATCTATCGAGAGTCGGATGAAGAAGGATAGAAAAGCTAAGGGTGG CTTTATCAGTAGAATATTTGGATGA
Protein sequence (LotjaGi4g1v0421900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDDQKSTNSDQIVPKFSIHVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYSKRTISESNVTEV RFLHVILYSAERAWSHAMEKRQLPNGPNARQRIYLIGRLRKAVKWATLFSQLCAVKSDSRTSLEAEAYESYMKGSLLFEQ DQNWDVALKHFKSARAVYEELGKYGDLDNQVMCRERVEELEPSIRYCLHKIGESNLQASELLNIGDMEGPALDLFKAKLE AVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDIHGPSADSIPADKRLVIFDKIFSAYHDARGFIRADL ATTGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLARRSDDKNEKVTKPEELVRLYDLLLQNTADLSDLVSS GRDRNSEEVNFAEVCSCKSLAFRAERCFYVAKSYGVAGKRAEAYALYCRARTLAEDALRKFQMLDGDNKTMVKELEVLCN ECRSNSCIEHALGIMEEKKAQENLSEGISNISLTGAERLEKFLLEKLDIYESAVGDSNVKRAPRIAAFPPAFQSISRNPI VLDLAYNMIEFPSIESRMKKDRKAKGGFISRIFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 592 | 592 | 3.3E-224 | ||
| Gene3D | 17 | 214 | 198 | 2.2E-69 | ||
| PIRSF | 18 | 587 | 570 | 1.7E-91 | ||
| CDD | 22 | 209 | 188 | 6.15117E-63 | ||
| Pfam | 35 | 569 | 535 | 2.6E-158 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Signal recognition particle binding | Interacting selectively and non-covalently with the signal recognition particle. | ||
| Cellular component | Signal recognition particle, endoplasmic reticulum targeting | A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Molecular function | Endoplasmic reticulum signal peptide binding | Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum. |
Expression pattern of LotjaGi4g1v0421900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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