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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0421900 |
| Transcript ID | LotjaGi4g1v0421900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle subunit SRP68; TAIR: AT5G61970.1 signal recognition particle-related / SRP-like protein; Swiss-Prot: sp|Q8BMA6|SRP68_MOUSE Signal recognition particle subunit SRP68; TrEMBL-Plants: tr|G7LIT8|G7LIT8_MEDTR Signal recognition particle subunit SRP68; Found in the gene: LotjaGi4g1v0421900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79708693..79715868) extracted from Lotus japonicus Gifu genome v1.2.
ATTATCTTTTGGGCCTAGAGTGAGTGAGTTGATCCAAATGGACCCGGCCCAAGTCATCTCTCTTCATCGGTTTCTTCCTT GCACAGTTGTGTTCCGTTCATTCTCGGCGATTTCTGTCACGGCTTACATTCGCTGCAGTAACCTCTGTGCTTCAATCCTC TCACGAAGCTCGAAACCCTCTCTCACTCGCCAGGTTTGTCTCATTTCCATTATCTACTTCGAGATCTATCACAGCGTTGT GAATTCTCATCCAATGAAGCTTCAATTTGATTATATGCATCGTATCTACCTCCAACACTGGCTCTGATTCGATTTTTGTT GTTTTATGCTTAATGATTGGATGAATGTTCTGAACTAACGTAGATTCGATGGTGAAGGAGAATCCAGTGTCCGCTATGGA AATCGATGATCAGAAATCGACGAATTCAGATCAGATCGTTCCCAAGTTCTCCATTCACGGTTTGTCTCATCCTTCATCGT TCAATGCTGTTCAATTCGCGTTCATATTCTTCTTGCTGATGAAATTGAAAACTCAGCATTTAGTATTGAAACTTCGATTT TGGTGTAATTGATGTTTTTTTTTATCTTCTTAAATTTCCAGTACTGCAGCTCTTGAAATCTGCGCAAATGCAGCATGGTT TGCGTCATGGAGATTACACTCGCTATCGGTATGTATGTATTTCGATCGTCTCTAACATGCTATCAAATAGCAAATTATGT TATTTTCCCAGCTAATTCATAGGAGAGGCACAATTTACTACTTCTATAGCTGAAACAGCTGAACTTTACTAGGGAAAATG GCATGGGGCATGTTAGCGTTGTCGTTTTTTGAAAATTCAGTGGGTAAAGGGTTGAAATATCTGTAGATTGGTAATTGATG TGCTTTTTTTCCTTTACATTGTAGGAGGTATTGCACGGCTCGTTTGAGGAGGTTATATAAGTCGTTGAAGTTTACCCATG GTCGCGGCAAATATTCAAAAAGAACCATATCTGAGTCCAATGTCACTGAAGTAAGGTATGCTTTGCTTACTGTTTAGCTC TTCTCTTACACTGTAGTTCTGAAACTTTTTGGTGGTGGTTGACTTATTATGAATTTGTGTTATAGAAGTAAAGGATAGTA GAATGAATGATTGGTTGCATGTATTTTGGTCGGTTTATCATCTATGTTGCTGTTGAATTATTTCTCGAATTGAAGTGATG CGGTAATTCCTGAATTATGTAGCGGTTCGTAATACCCACATTCATTAGCCAACCGTGATACCGTTTAATGATCCAAAAAA TCACGTAACAAAACATGGAACAGCTAAATGCCCATGAGGCAATCTTAAACCTATTTAAAGCCTAAGATAACAAAGATTAA GGCATCTTCACTCTTTCTCTAATTCTGAGGGCTAGGCTGTGTGTTGGTCACTGAGTTTGACCCCCTGGAGTTTGGAGATA ACAGGTATCATTATGTGAATCTGAAACCATCAATAAGTATTAACCATCACTTAGACCTTGCTTTGTCTCCTTTCTGCTTG CTTTATTTTTGTTTTAATTTTTTTTTACTACTTTTGGGAATTGGAAAATGAACATTTTTCTGTCTAGCAACCTTTTTACT TATCTATGCAGTTTAACATTGTAAGTTATTTGATTTCAATTCAGGTTTCTTCATGTGATTCTCTATTCCGCAGAGAGAGC ATGGAGTCATGCCATGGAGAAAAGGCAGCTTCCAAATGGGCCAAATGCACGCCAACGTATCTATTTGATTGGCAGGTTGC GGAAGGCAGTAAAATGGGCTACTTTGTTTTCACAATTGTGTGCAGTCAAGTCAGATTCTAGAACATCTTTGGAAGCTGAG GTGTGTCTTTTAATCATTAATTTCAACAAAAACATTTAGAAGAAAAGCTTTCCAAAATGCAAATGCTTTGATAGCTTTAC TCTTTTTTATTGTTAATCTATAGCAGATAACTGTTTTTCTTTGTTTATTTACTGATTTTTAGGCTTATGAATCCTATATG AAGGGGAGTTTGTTGTTTGAACAAGATCAGAATTGGGACGTGGCGCTAAAGCACTTCAAAAGTGCTAGGTACATCTACTC TGTTTCCTTGATTTATACATACTTCTTTGAAAAGAAGAAGAGACCATGCTCTTTTTCATAAAACATAAAAAAGGAACATG ATGATTATGCTTGGTTAAATCATAAATGAGATCTTTGCATACATAATTTGAAAATCTATGCCTTTTTGTGGCAAAAAATT GTTTAGTTTGTGTGATCTAGCACATTAGCTTTTGTGATGCTTCGTTCTTTTTGCTCCCCTTGCTCAAGTTTTCAACCTTG TCCATATTTAACAGGGCCGTATATGAGGAATTAGGCAAATATGGAGATCTGGATAACCAAGTGATGTGTCGTGAGCGAGT TGAGGAACTCGAACCTAGTATCAGATACTGCCTTCACAAAATTGGCGAGTCAAATCTACAAGCCTCTGAACTGTTAAATA TTGGTGATATGGAAGGGCCTGCATTAGACCTTTTTAAAGCTAAATTAGAGGTTGGTGTAGATTTCATTTATATATGTTAC TGGAAAATAGTGGAAACCAGTAATGTAATATGCATATCTTTGCAAATCAGTATACTCAAATTTTTCTTATAAGGACGTGT TGCATTGAGATAATCTTTCATTTTCGTGCCTATTCAAAAAGGGAACACAATCATACATGCATACATAAGATGATCTTTTT AATTTAACTAAACCTTTTGAAATTCTAAAACTCCTAATGTTTCATTTCCATGCAAGAGTCTTAATCAGTTCAGTTACTTG AATCAATAGGCTGCTATTGTGATAGATAGCTTCATGCATGTCCTTTCTATGATAGAAATACATAATTGAATAGCGTTTGT TCCAGGCTGTCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCTTGACTGAATTCCATTGGCTTGGCCATAGATTTCCA ATTTCAAATGCCAAAACAAGGGTTGCCATTTTGAAAGGTTGGTAGCCTTCTTCTCATATAAATTAGAGGGCTGGAAGAAA AGTAATGTTATCTATTGATTAAACTTCATAATCATATTTCCAAGTCTTAACCTCATGCTTTGTCCCATGTGAATCCACCT ACTTGCGTCTTTGACCACTCTGCTAAATGACATTTACTAGTGTGGCTAGGAATTCTTTTTCTGTGTTTTCTTCCATGAGC GTGCTATTATAATTAATTGATTGCTAATTTCCATAGACTAGATGGCATATATTTTTATCATTTAGAACTTAGCCTTTTCC CTCTTGTGGATGTTTGTAATGCCAGTTCGGGATACACAATTTCTTACATTAAAATATATGCTGAAAATGTTTGGTTGATG AGCTTGTTAGTGCAATGCTGGGTTAATATTGTAGTATTTTTTTAGTAATATACCTGACATTCATTATAGTAAATCTGCTG ACCAAGTCCTTGGGATAATAGTTTGGTAATATACTTAACTTATTTAACATATGGTAACTTTTATTTTTTACGTAGTTCAG CTTAGGTAGTTCGAACTAACTATATAAAGTAATGTTTCTATCTGAATAATTTTCTCAGCTCAGGAGCTGGAGAAAGATAT ACATGGTCCCTCGGCAGATTCTATTCCAGCAGACAAAAGATTGGTTATTTTTGACAAAATCTTTTCCGCATATCATGATG CTAGAGGCTTTATTCGGGCTGATTTGGTAATGGAAATTACTTGATGTTCTTGCTGTTAATTATGATTTACCAGCAAATCT TTTTACTAGTTATACAAAGTTACTAATACTTTTCACGATAGATTCTCTATAATACCCTGTTTTTCTCAATCTATATTTGG TCTTTTGTAAATTTTAGGCTACTACAGGAAGTGCTGAAAGTGTAAAAGATGATCTGAATGGCCTTGATAAGGCTGTCAGT GCTGTCTTAGGAGAAAGAACCATTGAGCGCAACCTCTTGTTGGTTAAGGTAGCGAAGAGTAAACTTGCAAGGCGTAGTGA TGATAAAAATGAAAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGGTGCCCATATATTTGT TTGTTAACTTGCATTAATTGAACACATTTCTTTGTGATCCCCCGAGCTGCTGCATTTATTTTTTGAGGTATTAGCTCCTC AAATGAAGTGACAATGCTTGCATGGATCATGTATTTGGCAGAATACAGCTGATCTATCAGATTTAGTCAGTTCTGGAAGG GACAGAAACTCAGAAGAAGTTAACTTTGCTGAAGTGTGTTCGTGCAAAAGTTTGGCTTTTCGAGCTGAAAGGTTTGCTTC TTAGAACCGAATATTTTCTTCCTGATCTTAGAAATATCCTTGCTTTCAGTTTGGTGCTTACAAACTGCACACGCGCACAT GTTATTTTCAGCTTTTTCTGAAAGCTAAATTTTTTCACTTTCTATTCTAAAAGAAATCTTTGTACCAATAGCACTGAAGA AAGTTCATTAAGAACATACAGATTACTGTTGAGCTGCGGAGCTTTTCTGTTCATCCCATTGACAAATATGCTCATTGATG ACCACTCACTTATTTTCCTTATGCTTTTAATAATCAGAGCTTTCTCTGTAGTTTGAATGTCTAGGATTTGATTTGGTTTT TCCTCGAATGTGAAATTTCATATTCTTGGTTTTGGTTTTCCCTCTGAAAAACAGTTTTGACAGTTATTGCTTTAGTTATA TGTCATAGATAGTTACATAGTTTTGTCATCCTTAGAGTTTTTTATTTTTATCTCAGCAGATGAACATAATTAGAAATAAA TCCTAAAGTGGTTTACTTTTTAGTTAGCTACAGTGTGTGCAATTACCACCTTTATTATTTGGTTAATGCCTAGATGTTTG TGTAATCAAGATTTAGTTTTTACCCTTCATTGAGGGCTCCAGGGAAAGGGCAGTTAAGTAGAAGGGTGATGATTTCTCGC TGCTGGTTCAGCCAAATGTGTATCTTGTTTTTGTAGAGACATTCCTACCTGAACTAAAGGTACATGTGCTTATGACTTGT GTAGGTGCTTTTACGTTGCGAAGTCATATGGTGTTGCTGGAAAGAGGGCTGAAGCATATGCTTTGTATTGTCGTGCTCGA ACACTGGCAGAAGATGCCCTAAGAAAGTTTCAAATGTTAGATGGTGATAATAAGGTAATTTTAATTATTTTTCTTAAATC AGGTTTGAAGAACCTCACTGATCAATACCAGGGCCATCATCTGCATTGTGATATTTTTTCTAATGAACCTCACTGATAAT ACCTTGGAACATCTTGGTAGACCTGAAATTTTGAATGTGGAATCCAATGCCGTTGAAGGTAAAGAAGTAAAGAAAGCTCG TCTGTCTAATGATCTCCTTTGACTAGCCATAGGATACATAGATGGCAATTTATTGGTCTTGTGGCTTTCTCCGATGTACA ACAGGCACAATAGGTTGCAATCTCTGAATCCTTGCCTAGTCTGAGAAGATCATTGTGCAAGTGGTTTTTTTATTTTTGTA AATTTCTTACTATGAAAAACAATTGACTTTACACTCAGAACTTCAGGTCTGCACAGTATTTCCATATTACTAATGTTTAT TCTTTCATCTTTTTCTGGTAATATGTAAGATGAGAATGTGCTTCGTATGTTGAAATTTTTGTATCGATCGAACCTTCGTG GGTTAATGGTATTTGGGGTAGGTTCATGTTTTAAGACTGGGATATGCTTGAGTACAAAAGAAGTTCACGTGAACTGATAC AAATTGAAACATGGCACTGTGTAGTTAGTTTTTCAACTTTCATGTATTGTCATTGTACATCCATCGTACAAAAAAACTTC ATAATGTATAGTAGTATTGTTTAACATTCCCTATCAATAATTATCAAACCTCACATGATTTGATTGCTGATGTACATTCC TATAAATTTCCCCCTGATTTTTGGTTTGGCAGACTATGGTGAAAGAGCTAGAGGTCTTGTGCAATGAATGCCGCTCTAAC AGTTGTATAGAGCACGCGTTGGGGATCATGGAGGAGAAGAAGGCTCAAGAGAATCTCTCCGAAGGGATCTCTAATATATC ATTAACTGGAGCTGAGCGGGTACATAAGTTTCTACTTCTCATATGATCTCAATATGGGGTGGTATTTGCATGAAACATTT ATTCATATATTCTGACGTGTGTCTGCTTGTTTCAGTTGGAGAAATTCCTTCTTGAGAAACTTGATATCTATGAGTCTGCT GTGGGTGATTCAAATGTGAAACGTGCTCCCCGTATTGCAGCTTTCCCTCCAGCTTTCCAATCAATCTCCCGCAATCCTAT TGTGCTGGATCTGGCCTATAACATGATTGAATTCCCATCTATCGAGAGTCGGATGAAGAAGGATAGAAAAGCTAAGGGTG GCTTTATCAGTAGAATATTTGGATGAGTTTATTTGGTTAGGTTTTTGGTTCTTCAGAATGAAGAATTCGTGACAACTAAT CTGGAGGTTCCTTTTGTTGAATATTTTTATGAATTTTTGACATGTTGATATACAAATTTTGAGTGGTCTGTTAATTTGGA AATTTACAGCGGGAAGATTGATAAAACATTTTATATAAGTAGGACTGTATTCTACTTTTTGTAGCTGCGGTTATAATGTT TACAATAACTCCTCTTTTGAGCTCCAGAGCGTCTCTTTTCCATACTGGAAGCTCATGCTGCTGCTGGTCCAGCAGGTCGC GCCTCTGGTCTCTCCTCCCTTCTTAGGCCTCTCAAGCTTCTCCCAGGACATCCAATTCATCTTCCGAATAGTGACATCTC CTCCCCAGAAAAATTGATTAATCGTAAGCTGAACTACATTGCACAAAGTTTGTGGCAAAGCAAAACAGCTCATAATGTAC GCTGGTATAGCCTGAACCACTGACTTGCAATAATTTGTTCTAGTGCTTCCTTTTCTTTTCTGCTCATCTTCACTTTTTTT TTCATTCTATTATGAAGTAACTATGTACAAGTTAGATTAGAAAATGTGTCATGAAAAAAAAAGGGCAGAACTTTTCATGT GAAGAATCTTAAAGGAACCTTAATGTTATCTTTGTGCGTTTATTTGATCAATATAATCAGACACCGTAAACACAGCAACA TGAAGTATTATAATGACTCTGGAATGTTGATTTAAAAAGAGGGAAGAAATTCAAGT
CDS sequence (LotjaGi4g1v0421900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAAGGAGAATCCAGTGTCCGCTATGGAAATCGATGATCAGAAATCGACGAATTCAGATCAGATCGTTCCCAAGTT CTCCATTCACGTACTGCAGCTCTTGAAATCTGCGCAAATGCAGCATGGTTTGCGTCATGGAGATTACACTCGCTATCGGA GGTATTGCACGGCTCGTTTGAGGAGGTTATATAAGTCGTTGAAGTTTACCCATGGTCGCGGCAAATATTCAAAAAGAACC ATATCTGAGTCCAATGTCACTGAAGTAAGGTTTCTTCATGTGATTCTCTATTCCGCAGAGAGAGCATGGAGTCATGCCAT GGAGAAAAGGCAGCTTCCAAATGGGCCAAATGCACGCCAACGTATCTATTTGATTGGCAGGTTGCGGAAGGCAGTAAAAT GGGCTACTTTGTTTTCACAATTGTGTGCAGTCAAGTCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAATCCTAT ATGAAGGGGAGTTTGTTGTTTGAACAAGATCAGAATTGGGACGTGGCGCTAAAGCACTTCAAAAGTGCTAGGGCCGTATA TGAGGAATTAGGCAAATATGGAGATCTGGATAACCAAGTGATGTGTCGTGAGCGAGTTGAGGAACTCGAACCTAGTATCA GATACTGCCTTCACAAAATTGGCGAGTCAAATCTACAAGCCTCTGAACTGTTAAATATTGGTGATATGGAAGGGCCTGCA TTAGACCTTTTTAAAGCTAAATTAGAGGCTGTCATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCTTGACTGAATTCCA TTGGCTTGGCCATAGATTTCCAATTTCAAATGCCAAAACAAGGGTTGCCATTTTGAAAGCTCAGGAGCTGGAGAAAGATA TACATGGTCCCTCGGCAGATTCTATTCCAGCAGACAAAAGATTGGTTATTTTTGACAAAATCTTTTCCGCATATCATGAT GCTAGAGGCTTTATTCGGGCTGATTTGGCTACTACAGGAAGTGCTGAAAGTGTAAAAGATGATCTGAATGGCCTTGATAA GGCTGTCAGTGCTGTCTTAGGAGAAAGAACCATTGAGCGCAACCTCTTGTTGGTTAAGGTAGCGAAGAGTAAACTTGCAA GGCGTAGTGATGATAAAAATGAAAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACA GCTGATCTATCAGATTTAGTCAGTTCTGGAAGGGACAGAAACTCAGAAGAAGTTAACTTTGCTGAAGTGTGTTCGTGCAA AAGTTTGGCTTTTCGAGCTGAAAGGTGCTTTTACGTTGCGAAGTCATATGGTGTTGCTGGAAAGAGGGCTGAAGCATATG CTTTGTATTGTCGTGCTCGAACACTGGCAGAAGATGCCCTAAGAAAGTTTCAAATGTTAGATGGTGATAATAAGACTATG GTGAAAGAGCTAGAGGTCTTGTGCAATGAATGCCGCTCTAACAGTTGTATAGAGCACGCGTTGGGGATCATGGAGGAGAA GAAGGCTCAAGAGAATCTCTCCGAAGGGATCTCTAATATATCATTAACTGGAGCTGAGCGGTTGGAGAAATTCCTTCTTG AGAAACTTGATATCTATGAGTCTGCTGTGGGTGATTCAAATGTGAAACGTGCTCCCCGTATTGCAGCTTTCCCTCCAGCT TTCCAATCAATCTCCCGCAATCCTATTGTGCTGGATCTGGCCTATAACATGATTGAATTCCCATCTATCGAGAGTCGGAT GAAGAAGGATAGAAAAGCTAAGGGTGGCTTTATCAGTAGAATATTTGGATGA
Protein sequence (LotjaGi4g1v0421900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKENPVSAMEIDDQKSTNSDQIVPKFSIHVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYSKRT ISESNVTEVRFLHVILYSAERAWSHAMEKRQLPNGPNARQRIYLIGRLRKAVKWATLFSQLCAVKSDSRTSLEAEAYESY MKGSLLFEQDQNWDVALKHFKSARAVYEELGKYGDLDNQVMCRERVEELEPSIRYCLHKIGESNLQASELLNIGDMEGPA LDLFKAKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDIHGPSADSIPADKRLVIFDKIFSAYHD ARGFIRADLATTGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLARRSDDKNEKVTKPEELVRLYDLLLQNT ADLSDLVSSGRDRNSEEVNFAEVCSCKSLAFRAERCFYVAKSYGVAGKRAEAYALYCRARTLAEDALRKFQMLDGDNKTM VKELEVLCNECRSNSCIEHALGIMEEKKAQENLSEGISNISLTGAERLEKFLLEKLDIYESAVGDSNVKRAPRIAAFPPA FQSISRNPIVLDLAYNMIEFPSIESRMKKDRKAKGGFISRIFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 601 | 592 | 3.3E-224 | ||
| Gene3D | 26 | 223 | 198 | 2.3E-69 | ||
| PIRSF | 27 | 596 | 570 | 1.8E-91 | ||
| CDD | 31 | 218 | 188 | 3.54191E-63 | ||
| Pfam | 44 | 578 | 535 | 2.8E-158 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Signal recognition particle binding | Interacting selectively and non-covalently with the signal recognition particle. | ||
| Cellular component | Signal recognition particle, endoplasmic reticulum targeting | A ribonucleoprotein particle of 325 kDa composed of a 7S (300 nucleotide) RNA molecule and a complex of six different polypeptides. This binds both to the N-terminal signal peptide for proteins destined for the endoplasmic reticulum as they emerge from the large ribosomal subunit and also to the ribosome. This binding arrests further translation thereby preventing the proteins from being released into the cytosol. The SRP-ribosome complex then diffuses to the endoplasmic reticulum where it is bound to the signal recognition particle receptor, which allows resumption of protein synthesis and facilitates the passage of the growing polypeptide chain through the translocon. Through a process involving GTP hydrolysis, the SRP-SRP receptor complex dissociates and SRP returns to the cytosol. Of the six polypeptides of SRP the 54 kDa subunit (SRP54) is the central player. It contains an N-terminal GTPase domain and a C-terminal domain that binds directly to the signal peptide and the SRP RNA. Examples of this component are found in Mus musculus, Saccharomyces cerevisiae and Arabidopsis thaliana. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Molecular function | Endoplasmic reticulum signal peptide binding | Interacting selectively and non-covalently with an endoplasmic reticulum signal peptide, a specific peptide sequence that acts as a signal to localize the protein within the endoplasmic reticulum. |
Expression pattern of LotjaGi4g1v0421900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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