Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0422000 |
| Transcript ID | LotjaGi4g1v0422000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Magnesium-protoporphyrin O-methyltransferase; TAIR: AT4G25080.1 magnesium-protoporphyrin IX methyltransferase; Swiss-Prot: sp|Q9SW18|CHLM_ARATH Magnesium protoporphyrin IX methyltransferase, chloroplastic; TrEMBL-Plants: tr|V7CRR1|V7CRR1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0422000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79716788..79719079) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTGTGTGCAGTTCAATCCAAGTCATCTTTGAAAAGTAGGACCCACAAAAATCAGAGAAAAGCATGGAAGCTGAAGGC TATCTTATCCTGGATAACATTTCTACTTCCACTCCACACTCCCACCGGCCGGTGACACAAACCGGAACCAAAAAAAAACC AAAATGGCGTTCTCACCGTCGTTAGGATCTTCCCTCTTCGCTCCAAATCCTAACAGAACCAACCGTTTCCCTAGATTCTC TCCCTCTCCCGCCAATCCCAAACTCCCACTCTCAACCGCATTCGCCATTCCCCCACTCTCAACCGCAACCGCCGCCGACG TCACCGGCGCAATCGACGGGACCACACTCGCTGTAGTCAGCGGAGGCTTCGTCGCCGGCCTTGCCGCTCTCCTCTCCCTG ACAGACCCCGAGAGACGGCGGCAGACCCAGGCCGAGGAGGTCGGCGGCGGCGACAAGGAAGTGGTGAGGGAGTATTTCAA CAACAACGGCTTCCAGCGCTGGAAGAAGATCTACGGTGACACTGACGATGTCAACAGGGTTCAACGAGACATCAGAGTGG GCCACGCCAAAACGGTTGAGAACGTTCTTCAAATGTTGAAAGATGAAGGCTCTCTGAACGGAGTTACTGTCTGTGACGCT GGTTGTGGCACCGGTTCTCTGTCTATTCCCCTCGCCAAGGAGGGAGCTGTTGTTCTTGCCAGTGATATCTCCGCTGCTAT GGTCTCTGAGGCTGAGAAAAAGGTAATCTATCCCTCCTCTTCTCTTCGAATTACAAGCTTCTAATTACAGATTGGTGAAA GGAATAAGCTCAAAACAGCTTATGGCCTACCATAAACTGTTTGCATAAGCTTTTCCAAACACTGACATAAGAGCTTATGC TTTTAGATAAGCTCAAATAAGCTCTTCCAAACGGGGCCTAATTTGAGCTCTAAAGAGCTTATGGGTAGGCTATAAGTTAT TTCTTAAGTTTAGCCGAATAGTGTTATATCATGAGGTAAGCTCAAATAAGCCATTAGGAAAGCAGTCATACATATTTTTA AGCTCTTTTGATGGCATTTTAATAAAATTCAAAAAATTATATGATAAGTATTTATTAATATAAGCGTTTAATTAAAAACA CTAACACTAGTATTTTCAAAGTAAATTTACAAAAATTGATTTTATTATAAATGGTAAGTAAGAGTAAAAGTATATGTGTT TTGAAGTGATTCTTACATGTTTATCAGGTATAAACAATCAAAACGTAAAAATAGGCTAAAATGATTATAATGGTCATAGG GCTCACCAAAATCAGTTTTGAATACTCAAGCATAAATGTGTTTGGTGCAGGCGAAAGATGAACTTGTAGGGAGTGCGAAT GGGGCAGTGATGCCAAAGTTTGTGGTGAAGGACTTAGAGAGCTTGGATGGCAAGTATGACACGGTGGTATGTCTGGATGT TTTGATTCATTACCCGCAAAGTAACGCAGATGGGATGATTGGGCACCTTGCATCGTTGGCGGAGAACCGATTGATTCTGA GCTTTGCCCCGAAGACGTTTTATTATGATCTGCTGAAGAGGATTGGAGAGTTGTTCCCTGGACCTTCAAAGGCAACAAGG GCATATCTTCACTCTGAGGGAGATGTGGAGAGGGCATTGCAAAAGGTTGGGTGGAAGATAAGGAAGAGAGGCTTAATCGC TACTCAATTTTACTTTGCTAAGCTTGTTGAGGCTGTTCCTATGTAGTGCAGAAAGATTAGAGGAAGGATAAAAATCTTCC CTCCCAAAATTGTGTCTCATTTGTCTGTCCCACCAACAAGATTTTGCCATATATCAACTAAAAAGTATTCATGTATGTTT GTAATCATCTCACCTATGTCTTCTTCAGTGGCATGCAAATACAGGTAAGAAGGGAAATGGAACAGAAAAATAGAGACAGA AAATTTTCATCCATTAGAGGAAGTTCCTAATGTAAATTGTCAGGCATATTTTTGTGTGCTTTTGCATGCTCTCCTATGGT TCATTGCAAATAATTATATCATTATGTATATTTCTTCTTAGTGTAGAAGATGCTGATGTATTATTTTCTTAATTTCAAAT TGAAATTCAAGTTTGAAACTGAAGAATGTTGATCCATTTTTAATGTATACCTTAGGTGATGACTCTGCTCTGTATTATTA TTTGCCGTCAAATTTTCGAGCTTCCTTAGTCAAATATGCTCACTGTCACTCTAATGTTACTGTAAGGGTATGTCTATGGG TGCGATAGAGTGGAGTGGTTCATCATGTATTTCAGTGTGGACTGTGGAGCTA
CDS sequence (LotjaGi4g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTCTCACCGTCGTTAGGATCTTCCCTCTTCGCTCCAAATCCTAACAGAACCAACCGTTTCCCTAGATTCTCTCC CTCTCCCGCCAATCCCAAACTCCCACTCTCAACCGCATTCGCCATTCCCCCACTCTCAACCGCAACCGCCGCCGACGTCA CCGGCGCAATCGACGGGACCACACTCGCTGTAGTCAGCGGAGGCTTCGTCGCCGGCCTTGCCGCTCTCCTCTCCCTGACA GACCCCGAGAGACGGCGGCAGACCCAGGCCGAGGAGGTCGGCGGCGGCGACAAGGAAGTGGTGAGGGAGTATTTCAACAA CAACGGCTTCCAGCGCTGGAAGAAGATCTACGGTGACACTGACGATGTCAACAGGGTTCAACGAGACATCAGAGTGGGCC ACGCCAAAACGGTTGAGAACGTTCTTCAAATGTTGAAAGATGAAGGCTCTCTGAACGGAGTTACTGTCTGTGACGCTGGT TGTGGCACCGGTTCTCTGTCTATTCCCCTCGCCAAGGAGGGAGCTGTTGTTCTTGCCAGTGATATCTCCGCTGCTATGGT CTCTGAGGCTGAGAAAAAGGCGAAAGATGAACTTGTAGGGAGTGCGAATGGGGCAGTGATGCCAAAGTTTGTGGTGAAGG ACTTAGAGAGCTTGGATGGCAAGTATGACACGGTGGTATGTCTGGATGTTTTGATTCATTACCCGCAAAGTAACGCAGAT GGGATGATTGGGCACCTTGCATCGTTGGCGGAGAACCGATTGATTCTGAGCTTTGCCCCGAAGACGTTTTATTATGATCT GCTGAAGAGGATTGGAGAGTTGTTCCCTGGACCTTCAAAGGCAACAAGGGCATATCTTCACTCTGAGGGAGATGTGGAGA GGGCATTGCAAAAGGTTGGGTGGAAGATAAGGAAGAGAGGCTTAATCGCTACTCAATTTTACTTTGCTAAGCTTGTTGAG GCTGTTCCTATGTAG
Protein sequence (LotjaGi4g1v0422000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSPSLGSSLFAPNPNRTNRFPRFSPSPANPKLPLSTAFAIPPLSTATAADVTGAIDGTTLAVVSGGFVAGLAALLSLT DPERRRQTQAEEVGGGDKEVVREYFNNNGFQRWKKIYGDTDDVNRVQRDIRVGHAKTVENVLQMLKDEGSLNGVTVCDAG CGTGSLSIPLAKEGAVVLASDISAAMVSEAEKKAKDELVGSANGAVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQSNAD GMIGHLASLAENRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHSEGDVERALQKVGWKIRKRGLIATQFYFAKLVE AVPM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| ProSiteProfiles | 1 | 323 | 323 | 104.772 | ||
| Phobius | 1 | 50 | 50 | - | – | |
| Phobius | 1 | 33 | 33 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 34 | 45 | 12 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| PANTHER | 51 | 310 | 260 | 7.1E-61 | – | |
| Phobius | 51 | 59 | 9 | - | – | |
| PANTHER | 51 | 310 | 260 | 7.1E-61 | – | |
| Phobius | 60 | 79 | 20 | - | – | |
| Phobius | 80 | 324 | 245 | - | – | |
| SUPERFAMILY | 88 | 306 | 219 | 3.58E-29 | ||
| Gene3D | 94 | 324 | 231 | 1.3E-66 | – | |
| TIGRFAM | 97 | 320 | 224 | 5.1E-87 | ||
| CDD | 155 | 237 | 83 | 8.69832E-8 | – | |
| Pfam | 227 | 322 | 96 | 7.3E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Chlorophyll biosynthetic process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. | ||
| Molecular function | Magnesium protoporphyrin IX methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine(1+) + magnesium protoporphyrin IX = S-adenosyl-L-homocysteine + H(+) + magnesium protoporphyrin IX 13-monomethyl ester. |
Expression pattern of LotjaGi4g1v0422000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…