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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0423600 |
| Transcript ID | LotjaGi4g1v0423600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIE subunit beta; TAIR: AT4G20330.1 Transcription initiation factor TFIIE, beta subunit; Swiss-Prot: sp|Q54KJ8|T2EB_DICDI General transcription factor IIE subunit 2; TrEMBL-Plants: tr|A0A072TV28|A0A072TV28_MEDTR Transcription initiation factor TFIIE, beta subunit; Found in the gene: LotjaGi4g1v0423600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79862313..79866721) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGTGGATTTCCATCGCTTTAGTATTTATTTATATTTGAAATATGTATATGTATTAAACCCCATCCCGGTACCAACA AACCAAACCCTTGCCTCCCTGCTCCCTCCCTCCATCGGAATTGCGGACATTCTCCTCCGCCGCACCGCGCGAACAACACA GTGAGTTTCCCTTACCCTTTCAATTTCGCTCTATCCACTTCGTGTTCTCGATTATTGTGTCCCTCATCATCTCAATCTTC CATGCAAACCTCAAATTCCCTCTCTATTTTTGCTAATCATCATCTTTTCTACCACAATTGTAGATAGTCATGTCTTTCCT AATCCCCTTTGTGTATTATTAGGAGATACAGTGATCATATAGACATTCTTCTTTATCAACACTAGTTTCCAGTGCTATCT TGTGCTTTACTTGTTATGTAATTTTCAGTTTTCTCATCCATCAAGGAGTAATTCTTCATACAATTTCTCCATTATGAATA GTATCTATATCTTTGTAGAAAGGAATGCTTATAAATCCACACTTTAATCAAGGAATAATTTTGGCTCTTCAAATTTGCAT AACTGAGGAACATTAGATTACCTTGACCTTGACATTCAATTTACATAATCCGTATTTCGGAACGCCTTATGCATAATTTG TGGAATGTGCGCATCTTTCTTTTTTATGGGGTAAATGTAAGCGTATGATCTTTTTCATATTATTACTATTACTCATGTGT AATTTTTGCATACTAGTTACTAGAGCTAAGAAAACACATCAATTGTGCAAAATGATTATTATATTTATCATTGTTGTCGG CTTGTCGCCACTTTTTATATGTACTATTATTATTAATTTATTATTTCTATTTTTAGTTTGTATCCCATCAAGTCAAATTA GCTTTATTATTTTTTCTGATTTGATTCTGATTTTTTGACGGGTCAACCCGACGACATTCCGCACCCTGTTTCAGGCTGGT TGATGGTGGGTGGATGCGGTGTATAGAGGGTTGACCCACTTTCCCTATCTTCAGCTAGTAACAACTTTAATTAAACTAGC AACCATAAAAAACTGAAACTAAAAACTGGTTTTTGGTTTTTTAAAGTTTCAGAATTCCATTTTACAACTATCCTGATTAT GCCGTTACCTGTGACTTCCCCTACCCGATGCTATTATCATCCTGTCGATGCGGTTATTTTATACCAATTTAGATTGATAA CCATGCTTGAAGTGAATTTTTTTCAAATTTGATTTGCTATATTTCTAGATGCATATATTGAAAATGATCCTTGGAAGTTC CTTGTATGATTTCAAACTCTGTGTATCCTTGGACCACAGATGGCACTACAACAACAGCTAGACAAATTCAAGAAACAGCA GGAGAAGTGTCAGTCAACACTGTCGAACATTGCAGCCAACAAGGCTGCAAACCGAAAATCTTCTGCTCCAGTAGTAGCTG CACCGGCATCAGCCAATGGAATAAATCCAGCACCTGCTGTCAAATTCTCAAATGACACCGTGAGGCTTCAGAATATTCAC ACCATACGCAATAGCACTGTGGGTCATCAGATGAAGCGTGTCATTGAGCTCCTGCTAGAGGTACTCAGTACTCACCCAGT TCCCATCCCATTTGATTTGTGATTTCCTCTTTCAATTCAAATTGACCTTTGGTTGTTTTATTTGGTTAATGATTTTATTG TCAGTAAATGGTGGTGCTAGTGACAGCAAAGCATGAAATGAAAAAAAGAGAATTTTGCATTCTTTAGTTATTAGTTCTAA CTTCTAAATTTTGAAAACATTTCCTGAATCCTGAAACACTGAATAGGGGATTTTTCCATGACAACCTGCATTTTACATAA TTATGCTTTTTATCCAATCATCTTTTAAGGTATTTTTGGGATTGATGGATATGTGTATCTTCTTTTGCTCCTCCTAAGCT TAATTGAAACCGTCCGCACATGCACACTTGTCGTAAATAAAAGTTTAGGTGGAGGGGTGGCTGCATCATTCTGAGGTCAG GGCATGTCATCATTGACTTAAGGAGCCATGCCATATGCATATGAACTGCCAATAAAACTCCATCTCAGGCTTTGTTTGTG AGGTTTTAGGGGACGGGAGGGAGAGACTTTGAGGGGAAGGGAGGGGAGGGCAGGAGAAGGAGAAGGGGGGGTAAGCCATT CCCTTGTTTGGGAGTTTTTTTTTTCTTTATTTTTTTTGGGTACAAAGAGCTAAAAGAAACAAAAAATCTAAAAAACTACT GCTGCCTTAGGAAAGCAGTTCCCATGCAGTCAGCTAACAACACAGGAGCCATACCCTCTTTTTTGGGAGTTTTTAATTCC CAAACCCCTCAATTTGGGGGAGCTAAAAAATATATCTAAAGGAGGGTTTTTAGAAATACCCCAAACCCTTCCCCCCTTTT TAAAATCTCCCAAACAAGGGGAGGGCTTCTCACATGCATTCCCCTTCCCTTCCCTCCTCTCCAAAGCCCAACTCACAAAC ACACCCTTAATGAGTTGATTAATTGAAAGTTGAAACCTAATTGATTTCGTTGCTTGTATTTGCTGACAGACACGGCAAGC CTTTACACCAGAGCAAATTAAGGAAGTATGCTATGTTGACATGAAGGCTAACAAAGATGTTTTTGACAGTCTGAGGAAAA ACCCGAAAGTACACTATGATGGGCAACGATTCTCTTACAAGGTAACTTTTCTGCATGCATATTCTTATACTGGAATGTTC CTTTAGAAAATTAACTTTTTCTTCCATTGTACTTGATTGCTTTTGGTCTACAGTCAAAGTATGGCCTTAAGGACAAAACA GAGCTTCTTCAACTGATACGAAAGTTTCCTGAGGGCATTGCGACTATTGACTTAAAGGATGCTTACCCCACTGTGAAGGA AGACTTACAGGTAAAATGATTTTTGTTAGGGCTTTTTATATCCTACTGTGATGGAAGACTTGTAGGTAAAATGACTTCTA TTAATGCTGTTTTATAATCCATTGTGATGGAAGACTTGTAGGTAAAATGATTTTATTAGGGCTGTTTTATTTTCTACGAA GAACATTTTTTACATTGATTTTTCTAAGTGACATTGGTTGTTTGTTCATCGATATAAGTCTATTCTTATTTTTTACTGCT TGAACTCCTGTTTGCATAATTTATCTTAGGAGAAATATGTTACGGACAATACACTAATACTGCATATTATTGGGTTTTAC AAAATCTTCTTGCCACTGTCTCCTAACCTTTGCTATTATGGCATTAATGTTAATACTGTGAAATAGATTTTTTTAATTAG TCAGTACTTATTGCTGTTTAATGTGCTAGATTATTTGGTGCTTGGTTAATGTAGAGGGTTGTCCCGCCTAGTAGGAAAAA CAATTGAAATTTGCCTCCTTCCCGTCACTTTCCTTCCTTTCCTTTGTCCTTTTTTTATATGAAAACCGCTCTCTTTGCTT CTTTTCTTATTGAGGTTATCATTGTACTGAGACATTAGCTGAAGAGTTATTTTTTAGTATGTTTTTTTGTCGAAATATGG AAATAAGAATTGAACTATTTAATGAAATTGATCTGAAATGTCTATAACAGATAATTGTTTTTCATATACTAGGGCCTCAT AAAGCTATATTGGTTTCTAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTGTCAAATTTTGATTCACACGACGAAGAC ATTGCCTACCCTAATGACCCCAAAGTGCATATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGGAGCATTGAATTGCC TCAAGACATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCCGCAACCAACACCGCAAAGAGGAGGAGTG CAGCAGAAATTCAAGGCATTCCTTCCAAGTCCAAGCCTAAGAAGAAGAAGAGGGAAATTAGCAAGAGAACCAAGCTGACC AACACCCATCTTCCGGAGCTCTTTCAGAACTTATTCAATTCCTGATCAACTCGAATCAGAGTTTTAGATTAGTTCACATA GATAATTTGTTAGCCTAACCTAGAACATACTAGTGAAAATGATTAAGGAGGTTCTTATTTCCCTACTGTTGATATTTGTT TTTAATTTTCATACCTAGGCTGCAAGTAATGGACTGTTGTGATTTGAAACAACTCTAGCAACCATTTGTGAATCCGTGTA GTATATTAATAGCTCGTTAAACATTTTAATATCTAGGACTTCTTCTTTTTGTGGTTACATACGGAACGAAAAACAAACGA AGGGAAGGGAAACTACTCTTCTGCATCATGAAATCCCACATTAAAATCCATTTTAAGATAACATTTTCAACAATTATTAT TATTATTCCACTGGAAAATTCATTTATTTGTATTTTTCCAGCTTGTCAAGTTTTTTTTTTTGAAACAAACTTGTCAAGTT AAACAAGTG
CDS sequence (LotjaGi4g1v0423600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACTACAACAACAGCTAGACAAATTCAAGAAACAGCAGGAGAAGTGTCAGTCAACACTGTCGAACATTGCAGCCAA CAAGGCTGCAAACCGAAAATCTTCTGCTCCAGTAGTAGCTGCACCGGCATCAGCCAATGGAATAAATCCAGCACCTGCTG TCAAATTCTCAAATGACACCGTGAGGCTTCAGAATATTCACACCATACGCAATAGCACTGTGGGTCATCAGATGAAGCGT GTCATTGAGCTCCTGCTAGAGACACGGCAAGCCTTTACACCAGAGCAAATTAAGGAAGTATGCTATGTTGACATGAAGGC TAACAAAGATGTTTTTGACAGTCTGAGGAAAAACCCGAAAGTACACTATGATGGGCAACGATTCTCTTACAAGTCAAAGT ATGGCCTTAAGGACAAAACAGAGCTTCTTCAACTGATACGAAAGTTTCCTGAGGGCATTGCGACTATTGACTTAAAGGAT GCTTACCCCACTGTGAAGGAAGACTTACAGGCTTTGAAAGCTGCAGGGCAGATTTGGCTGCTGTCAAATTTTGATTCACA CGACGAAGACATTGCCTACCCTAATGACCCCAAAGTGCATATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGGAGCA TTGAATTGCCTCAAGACATGATTGATATAGAGAAGGATCTTCAAAAGAATGGAATGAAGCCCGCAACCAACACCGCAAAG AGGAGGAGTGCAGCAGAAATTCAAGGCATTCCTTCCAAGTCCAAGCCTAAGAAGAAGAAGAGGGAAATTAGCAAGAGAAC CAAGCTGACCAACACCCATCTTCCGGAGCTCTTTCAGAACTTATTCAATTCCTGA
Protein sequence (LotjaGi4g1v0423600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALQQQLDKFKKQQEKCQSTLSNIAANKAANRKSSAPVVAAPASANGINPAPAVKFSNDTVRLQNIHTIRNSTVGHQMKR VIELLLETRQAFTPEQIKEVCYVDMKANKDVFDSLRKNPKVHYDGQRFSYKSKYGLKDKTELLQLIRKFPEGIATIDLKD AYPTVKEDLQALKAAGQIWLLSNFDSHDEDIAYPNDPKVHIKVDDDLKQLFRSIELPQDMIDIEKDLQKNGMKPATNTAK RRSAAEIQGIPSKSKPKKKKREISKRTKLTNTHLPELFQNLFNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 3.5E-133 | – | |
| PANTHER | 1 | 281 | 281 | 3.5E-133 | ||
| PIRSF | 1 | 281 | 281 | 2.5E-24 | ||
| ProSiteProfiles | 62 | 137 | 76 | 9.951 | ||
| Pfam | 77 | 134 | 58 | 2.6E-8 | ||
| Pfam | 137 | 195 | 59 | 2.6E-13 | ||
| MobiDBLite | 233 | 271 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIE complex | A transcription factor which in humans consists of a complex of two alpha and two beta chains. Recruits TFIIH to the initiation complex and helps activate both RNA polymerase II and TFIIH. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi4g1v0423600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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