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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0424000 |
| Transcript ID | LotjaGi4g1v0424000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S1; TAIR: AT1G12800.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1; TrEMBL-Plants: tr|A0A0B2QV70|A0A0B2QV70_GLYSO 30S ribosomal protein S1; Found in the gene: LotjaGi4g1v0424000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79902112..79908374) extracted from Lotus japonicus Gifu genome v1.2.
CAACCACGTCACTGAGTGGGGGATAAACCTCTGTGCTCCTCTTCTCCCTACTCGCTAGCCGTTCTATCTATCCAGACACC CGAACTCACAGATTCTGATTCTGACGACAACTGAACGAACATAGATTCTTCCTTTTGAACTTTGATGACCCTGTTCGAAA ATGGGGTCTCTTCATCTCTCCGCTAAATCATTGTTCACCACCAGAACTCAACTTCCTTGGTTTTCATCAGAGACTAGAAG AACAACAAGAACAACAACTGTTCATCTAAAACAGAGAAACAAGGTCTTCGCTGCCTCACGCTCACAGGAAGAAGATGAAT CCCCTCAACTCAACAGTGAAGACCTCATGGAACTCAAGTTCGCTCGCTTACTTGGGGAGGACCCCAAACTCACCCTTGCC AAGGTGCTGCATCCCTTACTCTTTCATTTTTCAGCTGACACACATACATACCCTTTTCACTTCCACCACTTATTCCTATT TGTTTCTACTTTTTCTGTTGCATGTTTTGATTTTTTTGAAATAAACCAGGTTTATGGGAATATGGGGTTGTGTTTTTGTC CTTGTCAATTTGATTATATTTATCATTATTATGCTTGTTGTTTTAGATAATGGGTAGAAGAGCCAACCCTGATGTTTCAT ATCTTGATATTGAGAAATCCTTTTATAAGAAGAAGGGTAAAGTTGTGGAGATAGAGGAACTTCCATTTGAGGGTTCTAAG GGAAGGAAGTTATCTACTAAATTGGATGACTTGGGTTTGGTTCGACCTGTTCCGGCCAAAGGATCCACATTCAAACCTGA TTATAACAAACCTGCATTGGAGATTAAGAGACCTGTCCGGACGGAAAGTAAGGAAGGGGATGTTAGAAAAATTGGTGTTC CTAATGTTGCTCTGCGAAAGCCAACCGTGTATAAAGAGGATGACGATGAAGACTTTTCCTCGAGGCTGAGGATGAAACCG AATTTGTCGCTGAAAATGAGGAGCGAGCCAGTGAGCGAGAAGTTTGGTGACATGACATTGTTGAAGAAACCTGGACTACC AGTTCCCAAGAATGAAGCTATGACCCAAGAGCCTTCTTCTCTTTTGGGTGATCAGAGGAACAATGATAGTGAGTTGAAGA TGTGGAAAGAAGAGTCAAGTGATGAAATTGGTAACTTGACATTGTTGGAACAGCCACACAAACCAATCAGCAAAAAAGAA GAGCAGTTTGAGGATGAGAAAGTTGTAGTCCCAAATGAGGTAGGTTCTAACTTGACGTTGTTGGAACAGCCACACAAACC AATCAGCAAAAAAGAAGAGCAGTTTGAGGATGAGAAAGTTGTAGTCCCAAATGAGGTAGGTTCTAATTTTGTTGCAATAT GGAACTTAGTAATGTAAAGCTAGTTTTTAAATATTTCATGTTTGAGTAATCAGGGAGTGGAGCAACTTGAGCAGAGAGAT CTTGAGTTCCATGAGGAGCCAACTGATTTAAGTCAGCTGTCAGATTCAAATTCAGTTGGTTCTAGAACGGAGTTGTCTGT TGAAGCTGCACTGCAAGGAAAGCCAAAAAGGTATATCAAAATTAAACTATGGTTGTATATTTCAGTTCATGGTTGCAAGT CGACTTGCATTTCGTTACTTAAATGTGATTTTGTTATAGATTAGATCAATCAGAGTTACAAACCTCAAATTTTGTTGGAG AAGATGCCACTTTTCTTCCTCCTGGTGGTAATGGAGACAACGAAGAATTACGAAATCTTGTTTATACGTCAGATCTTCAG GTCAGATTGCATAGATTATGAGTTATATATTGATTTTCCTAAACTTCATATTAACCTTTGTGCTCTTGGATCTGTAGGAA ATCGAAAAGGCAGATTGGACCAGGGCAGAAGCTTTGATGAAGACCGGACGTAAAGAGGATGTGGAACTAGTAAGCTGTAA CACCAAAGGCTTCATTGTAAGTACTTAAAAAGCATTAAGCTGGACTTTCATTTGTCAATACAAAAACAATTCTTAATCAT TGATGACTTTTTCTTTGTATATATCTTCTTAACTGGGTTAAACCATTTTATAGGTTTCTTATGGTTCCTTGGTAGGATTT CTGCCGTACCGTAATCTTCCTTCCAAGTGGAAGTTCTTAGCTTTTGAATCATGGTTGAGACAGAAAGGCTTGGATCCATC AATGTACAAACAAAACTTAAGCACTATTACAAGTTATGAGGCTGAAAAAAAGAAGTTATCTTCTGATTCTCCTCCATATG TGGAGATTGATGGTAAAGTTGAAGATAACATTTCCCCAGATATGAAATTGGAAGATCTGCTGAGGATTTATGACCAAGAG AAAATAAATTTCTTATCATCATTTATCGGAAAGGTTTGGTATTCAAACATTGATGGATTTGCAAAAGGTGATACATGAAT ATTATCATTCTTAATATTAACTTACCGATACATTATTTTGAAGAAAATCAGAGCGAATGCCTTATTGGCGGACAGAAAAA TGAGAAAGCTCATATTTTCACTTAGACCAAAAGAGAAGGAAGAACTAGTTGAGAAGAAAAGAAATCTCATGGTAAATGTT TTAGTAACAATAACCATTCTTGAATTAGCATGGAGCATGTGGTGTTGATTGAATGCAACAAATTGGCATTCAGATCCATT TTATGTTTCTTATGGCAGGCTAAACTTCAAGTTGGCGATATAGTGAAATGCCGCATCGAGAAGATAACTTACTTTGGAAT TTTTGTTGAGGTATGTACAGCATTTTATGACAGTTTTGTGAAGTTTTTTCCATATGATTGTATTTGTGCCTCTGTATTTA GCTAAACACCTCTCTCTTGTGGAATTGAGTACACAGTGGTGGCGGAAAATTCTAATTAATAACATGTTATTAATGTAGGT TGAAGGAGTTCCTGCACTGATTCATCAGTCAGAAATATCATGGGATGCCACTTTGAACCCAACATCATATTTTAAGATTG GACAGGTATTTACCATTTTACCTCCTTGACAGTATGCCAAATTAAGCCCGTCCTTTTAACTTGAAAAAAAAGCCTCATGA TTAGCCACGTGCAATTTGGTTACTCTTTTTCTGTTCCTATTATTCGTTTTGCTTTCGTAACCTTGTCATCTATTTTCAGT GCTTTCAATGTAAATGATATCCGGAGTCTTTATAATATCATTTCTTTGTAATTAATTTTAGCTTTACATTTTTATCCAGG TTGTAGAGGCAAAAGTTCACCAGTTAAACTTTGCACTTAAACGGATATTTTTATCATTAAAGGAGGTCATGGTAATTTTT CTAAGTCGTTTATATTTTCAACTGTTTCCTTTAATTGGGGAGAATTATGCAAATTATATTGGTAAAGTCTATATAGACTA AGCAGTAATTGTACACTTTGTGATTTAACAAATCATCACCTTCCTATGGCAGCCTGATCCATTGATGAATGCCTTGGAGT CTGTTGTTGGGGGTCATGACCCCTTAGACGGGAGAATGGAAGAAGCCCAAACGGATGCAGAGGTAATATTTACATGAGAA ATTAGAAGTCACTTTACTACTAGCAATCAAAAAATTTATCAAAATAGACCTATTGTGTTGATTAAATAATTGCATTGGAT TTGGATCGTATTTTCCTAGTAGTTTAGCAGTGAGTGACAGGCTTAAGAGAGTTTTATTTACATGTGTTAATATTGTAATT AGCTAACAGATGCCCTTGTTGGTATTGAAATTATGCAATTTGGTTGTAATCTGGTCACTATACACATATTTTGTCTGGAA CAATGGAGCAAAGGTGTGCCCCTACAAATTAATAAAGATGCTCAGTAACATGCTGCTTGTTGAATATGGTCGTTTGTATG GATGCTTGTGGTAAATTTGAGGGTCTTTGTGTGGGACTTGGGATCGAAATAATTTTAACCTTTTTTATTTGCTCAAAAGT ATAAACTACAAATAAAGGGTGTACTTTGTGGTAAAATTGACTCTTATAAGTTTTGGTGGCAAGAAAGTAAGTTTGATGCT CATTGGCGTTGTATGAACCCGGGGCAAGATGATTCATACCCCTATGCCTTCGGTTGGGTGAGATTGAACCTGGGTACGTC TTTGTGTGGGTACAGAATTGCGTTTCATGACGAAAAGACATTTTGAATTTATAGTTGTTTTCTGTGTTTTATTCCACCCT TTGAGTTTCCACCTTTGGCCCTTTGGTTATGCCTGTGATTGAGTCTTATGCACAATATTTTCATTCCAATCAACCATTTT GTTTGTATGCTGATTTATGTGGCAGAAAAAGAATTCTGTTTGCCTTATAATGAATCATTAATATGTAACTTATTTTATTA TTCAGTTGATTTCATCGTTTGACATAACTAATCATCAGATCATGCTCATTTTTGGACAGTGGCCTGAAGTGGAATCTCTT ATTGTAGAATTGCAAAAGATTGAGGGAGTCCAGTCTGTTTCAAAAGGCCGTTTTTTCAGAAGCCCTGGTTTAGCTCCAAC TTTTCAGGTTTGGATACATATATTCAGAAGTCTGAAATCTGCATAATTTAATGAATCAAATAATTTAGATTTGTTTTTCA TAATGGGCTTAAATGAATATGAGCTCATTATTTTTTCCGTCCTAACTCGCCATCAAGTTAGCAATTATGCATTATGGATT TTATGTATAGTTTATCAAAGTTCCAAACTAATCAGCTGTCATATAGAATCTCCTTGTGACTATCTTAAATTTTTTGCAGT TGAAAATGTATCAATGTTGTTCTTACTATTCAAATAAACAACTGATCTGCCATGGATAACATTATGATAAGCTATTTGAT GGCTAGGGTTTTTTTTTTTTTTTCTAGCATTGATATTACTGGTTTTGTTTTTGTTTGTCATATTTTTTTCCAGAGAGTTT AATATTTGTTAGCTAACTCAATTCTTGTTTTATCTGCATTCCGACGAAATTTTGTTCCAGGTTTATATGGCGTCCATCTT TGAGAATCAGTACAAATTGCTTGCTCGAGCTGATAATAGAATACAAGAGGTAATGTTTTAGAATCCATTTCAACTTCTTC GTAAGCAGATTTTGCTGTATCATTCAAAAACGTCTTCACTACCACTGGTAGTCTTTCTTTTTTTTCTTCTTTTTATCACC GTAAATGGTTTTCTTAATTTATATAATTTATACGTCACAAAATTGCTTTGGTACATGAAGTTTCCCGTAATCTAGAATTC TCAAACTGACCTGTTTTCTCAGTTGTTGCATTATTACAGTTGGCAAACAGTTTCTCATGTTCATTCAAGAATACACGTTT GAATTATAGTTTGCTAAAGTGCATGTTTGTAAATCCTTTTGATTCTAAAGGAAAAATCAACTTTGGGGTGAAGCTTATGT GAGAGTCTTCATCGTGTCATAATTGATTCTGAAAAAAAAAATAACTGAAACAAACTTGCTAAAACATAGCTTGACCCAAT GGGGGAAAGCTTTTTTTCTTTTCCATATTCACACTATTTGAGAATCAAAATCATGTTCAAGGCTCAAGCAAAACCTGACT ATGGTTTTGCACAATATGCTCAAACACAACTAAACAATGGTTTTGCCTAAACAGGGTTTTGCACATGCTTTTGGTGGATT ACTTTTTCCTGTTTTCTTCTTTTGTTTTAAATGCACGTGGATTACTGGGAAATCACATATTTTCATGCTTAATTACAGTA TAATTTAACCTTATTCAGTAATCATCTTGGGCAGGTGATGGTTCAAAGTTCTTTAGATAAAGAACTGATGAAATCGGCTA TTATGACATGTGCAAACAGAGTGGAATAGTTGTGGCTCGTCTGTGGCTATAAACATGTTGCTTATTTTTTTGGTGATTGT ACATTCTTTTGGGGAGTGCCAGCTACAATCAAAGGAGCAGTTCAAGTTAATTATGCAATAGGCTTGTTGGAAGGATCAAT TTCTTTCCTGGAAAAAATAGTAATAAAAAAGGCCCTTTTTTGGGGGGTGGATGGTGTAGAGTTGAAGGGTTACATATAGG GAACATGTTCTTTGTCATGGTTAAATGAAAGAAAGAAACATGTAAAAAGTGCTTGAGAACTTTGGTGCATGGAGAATTGG TTAATCTTATATATTGGACAGATAGATGTAGTTCTTGGACACTGTATCATGCATGTAGTAAATTGTTTTTGTTACTTGCA TATATGAAATTAAGGCTAGAATGTGAAGAGTTTAGGCTATGTTCAAACTAAATATGAAATGAGTGGTTTGAACGTGTCCT CGAACTATTTGATTTTAGTGAGC
CDS sequence (LotjaGi4g1v0424000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTCTCTTCATCTCTCCGCTAAATCATTGTTCACCACCAGAACTCAACTTCCTTGGTTTTCATCAGAGACTAGAAG AACAACAAGAACAACAACTGTTCATCTAAAACAGAGAAACAAGGTCTTCGCTGCCTCACGCTCACAGGAAGAAGATGAAT CCCCTCAACTCAACAGTGAAGACCTCATGGAACTCAAGTTCGCTCGCTTACTTGGGGAGGACCCCAAACTCACCCTTGCC AAGATAATGGGTAGAAGAGCCAACCCTGATGTTTCATATCTTGATATTGAGAAATCCTTTTATAAGAAGAAGGGTAAAGT TGTGGAGATAGAGGAACTTCCATTTGAGGGTTCTAAGGGAAGGAAGTTATCTACTAAATTGGATGACTTGGGTTTGGTTC GACCTGTTCCGGCCAAAGGATCCACATTCAAACCTGATTATAACAAACCTGCATTGGAGATTAAGAGACCTGTCCGGACG GAAAGTAAGGAAGGGGATGTTAGAAAAATTGGTGTTCCTAATGTTGCTCTGCGAAAGCCAACCGTGTATAAAGAGGATGA CGATGAAGACTTTTCCTCGAGGCTGAGGATGAAACCGAATTTGTCGCTGAAAATGAGGAGCGAGCCAGTGAGCGAGAAGT TTGGTGACATGACATTGTTGAAGAAACCTGGACTACCAGTTCCCAAGAATGAAGCTATGACCCAAGAGCCTTCTTCTCTT TTGGGTGATCAGAGGAACAATGATAGTGAGTTGAAGATGTGGAAAGAAGAGTCAAGTGATGAAATTGGTAACTTGACATT GTTGGAACAGCCACACAAACCAATCAGCAAAAAAGAAGAGCAGTTTGAGGATGAGAAAGTTGTAGTCCCAAATGAGGGAG TGGAGCAACTTGAGCAGAGAGATCTTGAGTTCCATGAGGAGCCAACTGATTTAAGTCAGCTGTCAGATTCAAATTCAGTT GGTTCTAGAACGGAGTTGTCTGTTGAAGCTGCACTGCAAGGAAAGCCAAAAAGATTAGATCAATCAGAGTTACAAACCTC AAATTTTGTTGGAGAAGATGCCACTTTTCTTCCTCCTGGTGGTAATGGAGACAACGAAGAATTACGAAATCTTGTTTATA CGTCAGATCTTCAGGAAATCGAAAAGGCAGATTGGACCAGGGCAGAAGCTTTGATGAAGACCGGACGTAAAGAGGATGTG GAACTAGTAAGCTGTAACACCAAAGGCTTCATTGTTTCTTATGGTTCCTTGGTAGGATTTCTGCCGTACCGTAATCTTCC TTCCAAGTGGAAGTTCTTAGCTTTTGAATCATGGTTGAGACAGAAAGGCTTGGATCCATCAATGTACAAACAAAACTTAA GCACTATTACAAGTTATGAGGCTGAAAAAAAGAAGTTATCTTCTGATTCTCCTCCATATGTGGAGATTGATGGTAAAGTT GAAGATAACATTTCCCCAGATATGAAATTGGAAGATCTGCTGAGGATTTATGACCAAGAGAAAATAAATTTCTTATCATC ATTTATCGGAAAGAAAATCAGAGCGAATGCCTTATTGGCGGACAGAAAAATGAGAAAGCTCATATTTTCACTTAGACCAA AAGAGAAGGAAGAACTAGTTGAGAAGAAAAGAAATCTCATGGCTAAACTTCAAGTTGGCGATATAGTGAAATGCCGCATC GAGAAGATAACTTACTTTGGAATTTTTGTTGAGGTTGAAGGAGTTCCTGCACTGATTCATCAGTCAGAAATATCATGGGA TGCCACTTTGAACCCAACATCATATTTTAAGATTGGACAGGTTGTAGAGGCAAAAGTTCACCAGTTAAACTTTGCACTTA AACGGATATTTTTATCATTAAAGGAGGTCATGCCTGATCCATTGATGAATGCCTTGGAGTCTGTTGTTGGGGGTCATGAC CCCTTAGACGGGAGAATGGAAGAAGCCCAAACGGATGCAGAGTGGCCTGAAGTGGAATCTCTTATTGTAGAATTGCAAAA GATTGAGGGAGTCCAGTCTGTTTCAAAAGGCCGTTTTTTCAGAAGCCCTGGTTTAGCTCCAACTTTTCAGGTTTATATGG CGTCCATCTTTGAGAATCAGTACAAATTGCTTGCTCGAGCTGATAATAGAATACAAGAGGTGATGGTTCAAAGTTCTTTA GATAAAGAACTGATGAAATCGGCTATTATGACATGTGCAAACAGAGTGGAATAG
Protein sequence (LotjaGi4g1v0424000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLHLSAKSLFTTRTQLPWFSSETRRTTRTTTVHLKQRNKVFAASRSQEEDESPQLNSEDLMELKFARLLGEDPKLTLA KIMGRRANPDVSYLDIEKSFYKKKGKVVEIEELPFEGSKGRKLSTKLDDLGLVRPVPAKGSTFKPDYNKPALEIKRPVRT ESKEGDVRKIGVPNVALRKPTVYKEDDDEDFSSRLRMKPNLSLKMRSEPVSEKFGDMTLLKKPGLPVPKNEAMTQEPSSL LGDQRNNDSELKMWKEESSDEIGNLTLLEQPHKPISKKEEQFEDEKVVVPNEGVEQLEQRDLEFHEEPTDLSQLSDSNSV GSRTELSVEAALQGKPKRLDQSELQTSNFVGEDATFLPPGGNGDNEELRNLVYTSDLQEIEKADWTRAEALMKTGRKEDV ELVSCNTKGFIVSYGSLVGFLPYRNLPSKWKFLAFESWLRQKGLDPSMYKQNLSTITSYEAEKKKLSSDSPPYVEIDGKV EDNISPDMKLEDLLRIYDQEKINFLSSFIGKKIRANALLADRKMRKLIFSLRPKEKEELVEKKRNLMAKLQVGDIVKCRI EKITYFGIFVEVEGVPALIHQSEISWDATLNPTSYFKIGQVVEAKVHQLNFALKRIFLSLKEVMPDPLMNALESVVGGHD PLDGRMEEAQTDAEWPEVESLIVELQKIEGVQSVSKGRFFRSPGLAPTFQVYMASIFENQYKLLARADNRIQEVMVQSSL DKELMKSAIMTCANRVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 737 | 737 | 0.0 | – | |
| MobiDBLite | 219 | 245 | 27 | - | – | |
| Gene3D | 534 | 624 | 91 | 4.2E-20 | – | |
| SUPERFAMILY | 538 | 644 | 107 | 8.58E-20 | ||
| Pfam | 549 | 621 | 73 | 4.8E-12 | ||
| SMART | 551 | 621 | 71 | 1.8E-18 | ||
| ProSiteProfiles | 553 | 621 | 69 | 16.624 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0424000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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