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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0429500 |
| Transcript ID | LotjaGi4g1v0429500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G61490.4 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|I3SCH0|I3SCH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0429500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80376655..80379337) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTTCTATTACTATTAGTATTTATGATGGTTGTTCTGCCAAGCCTGCATGTGGTGGAGAGTGTAAGAACTCCAGT TCTGGAAAATTTCGAGTACTGTGCTGTGAACTGCAGAGCTTACAGTGCCTCAGTGACAGATTTTGGAGGGGTTGGTGATG GAACAACTTTGAACACACAAGCCTTTCGGAAAGCCATAGAACATTTGAGCCAGTACTCATCTAATGGAGGGTCTCAGCTT TATGTTCCTCCAGGAAGATGGTTGACTGGAAGCTTCAATCTCACCAGCCACTTCACTTTATTCATTCACAAGGATGCTGT GATTCTTGGCTCTCAGGTTTAATAGCTTAATAACATGTTTGGATCAGTTTTTTTTTTTTCAAAATCAATTTTGGCAGCCA GAAGCTTCTCCATAGAATAGATTCTGGCTTAAGGATCAATTTTGTCATCCAGAAGCTACTTACAAAAGCTTCTCACCAAA ATTGATTTTGACTTCAAAATCAATTCCAACACCCAAAAGCTACTTACAGAAACTTCTCGCAAAAATTGATTTTGGCTTCA GAATTAATTGTAGAATGACTTCAAAACATGCTATAAGCTCTTTTTGATCAATATGCAAATGTTGTTAACTTGTTATTCAC TAGATGTAGTTTGTGCTGATATTGTATTTGTATTGCAACTCTTGTATTAGGATGAAAATGAGTGGCCAGTGATTGATCCT CTTCCATCTTATGGTAGAGGGAGGGATACCCAAGGTGGAAGGTTTAGCAGTCTTATTTTTGGAACCCACCTCACAGATGT GATCATAACTGGTAATGAACTAGTGCTTTTGAGCTTATGAGCCCGTTTGGATACTGACAAAAAAACACTTATTAAAGAAA CTATACTAACAAATACACTAGATAAACTCTATTAAGTACTCTTTAGTATCCAAACAGACTCTAGATATCTATTCCGACTA AAAATTTGCTTCTTTCCAGTTTCCATTATTGAATATAAGCCTTGAATATAAATTTGTTTCCAGGGGACAATGGCACATTA GATGGACAAGGTGATCTGTGGTGGAAAAAATTCCACAATAAGCAGCTACAATATACCCGGCCTTACCTGATTGAAATTAT GTATTCAGATAATGTTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCATGGAATATCCATCCTGTTTATTGCAGGT TTATATTTTTTTTCTCTGCCATGTCTATTTTCAATCTTTAGTCATTTGCTCTTCAAACTACCTTGATGAAATGCATCACA TTTCCTTTAGTCATCAAGCCTGCAGGGAAAATTTATCAAACTGTTTCATGTCTTTTAAATTTTAATATTAAGAAGTTGAC AGGGAAAATTTATCAAACTGTTTCATGTCTTTTAAATTTTAATATTAAGAAGTTGAATGCAGCAACGTTATTGTTCAAGG CATCACAATTCTTGCTCCTGTGACATCCCCAAATACAGACGGCATCAACCCTGGTAAGTTAGTGAACATCTCATAGGGTG TTTGGTGCTATTTGTAAACATCATAATTGATTCTCCACTCTTACAATAAATTTTTAGGATTTTTGTTGTTTTATTTCATA TTCTAGCTTCAAAATCAATTCTGGGATGAAACTACAAAATCTAGCTTCTGCCTTTAGACATAAACATTTGTGGGATTTCA CAACAGTGCCTACAAAAACCAATTTTCTCCTAAATAAAACCAAACATTAATCACTTCACTTTTAACTTTGTTTTATCACA GTCAATTTTACTAGTCACTTCTATCAAAAATCAATTATGACAACAATGCTGATCCAGACACGCACTCAGTGTAGAAACTC TACTACAATTGACTCTGAAAGCATGATCAATTCTGTGGAGAAACTTCTATGAGTGTGTGAGCAGGGTTCTAAGATAATAC AATGAATTGTCTAGACATCATGCCCCAACTGACTAACATTTATGGTTCTGATGCAGACTCTTGCACAAACACACGGATTG AAGACTGTTATATTGTGTCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATATCTTATGGAATG CCAACAAAGCACCTTGTAATCAGAAGACTCACTTGCATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTC TGGTGGGATTGAGGATGTAAGAGCTGAGGACATTCTAGCCATTAATTCAGAATCAGGGGTCAGGATCAAAACTGCTGTTG GAAGAGGAGGCTATGTCAGGGACATATATGTTAGAAGGATGACTATGAAAACCATGAAATGGGTATTTTGGATGACAGGG GATTATGGATCTCATGCTGACAACAACTATGATCCTAACGCAATTCCTGTGATTGAGAACATTAACTACCGTGACATGGT TGCTGAGAATGTGACCATGGCAGCAAGGTTGGAGGGTATATCCGGTGCCCCTTTTACTGGAATTTGCATATCCAATGTAA CCATTGAACTGGCCAAGAAGGCTAAAAAAGTGCCTTGGACTTGCACTGATGTTTCCGGGATTTCCAGTGGAGTGACTCCT GAGCCATGTGAACTCTTGCCAGGGCAGGCAGAAGAGAAGTTTGGAGCATGTTCCTTCCCAGAAGACAATTTGGCCATTGA AGATGTCAAGGTTCAGACGTGTACTTACAGAAGGAATTTATGA
CDS sequence (LotjaGi4g1v0429500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTCTATTACTATTAGTATTTATGATGGTTGTTCTGCCAAGCCTGCATGTGGTGGAGAGTGTAAGAACTCCAGT TCTGGAAAATTTCGAGTACTGTGCTGTGAACTGCAGAGCTTACAGTGCCTCAGTGACAGATTTTGGAGGGGTTGGTGATG GAACAACTTTGAACACACAAGCCTTTCGGAAAGCCATAGAACATTTGAGCCAGTACTCATCTAATGGAGGGTCTCAGCTT TATGTTCCTCCAGGAAGATGGTTGACTGGAAGCTTCAATCTCACCAGCCACTTCACTTTATTCATTCACAAGGATGCTGT GATTCTTGGCTCTCAGGATGAAAATGAGTGGCCAGTGATTGATCCTCTTCCATCTTATGGTAGAGGGAGGGATACCCAAG GTGGAAGGTTTAGCAGTCTTATTTTTGGAACCCACCTCACAGATGTGATCATAACTGGGGACAATGGCACATTAGATGGA CAAGGTGATCTGTGGTGGAAAAAATTCCACAATAAGCAGCTACAATATACCCGGCCTTACCTGATTGAAATTATGTATTC AGATAATGTTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCATGGAATATCCATCCTGTTTATTGCAGCAACGTTA TTGTTCAAGGCATCACAATTCTTGCTCCTGTGACATCCCCAAATACAGACGGCATCAACCCTGACTCTTGCACAAACACA CGGATTGAAGACTGTTATATTGTGTCTGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATATCTTA TGGAATGCCAACAAAGCACCTTGTAATCAGAAGACTCACTTGCATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGTG AAATGTCTGGTGGGATTGAGGATGTAAGAGCTGAGGACATTCTAGCCATTAATTCAGAATCAGGGGTCAGGATCAAAACT GCTGTTGGAAGAGGAGGCTATGTCAGGGACATATATGTTAGAAGGATGACTATGAAAACCATGAAATGGGTATTTTGGAT GACAGGGGATTATGGATCTCATGCTGACAACAACTATGATCCTAACGCAATTCCTGTGATTGAGAACATTAACTACCGTG ACATGGTTGCTGAGAATGTGACCATGGCAGCAAGGTTGGAGGGTATATCCGGTGCCCCTTTTACTGGAATTTGCATATCC AATGTAACCATTGAACTGGCCAAGAAGGCTAAAAAAGTGCCTTGGACTTGCACTGATGTTTCCGGGATTTCCAGTGGAGT GACTCCTGAGCCATGTGAACTCTTGCCAGGGCAGGCAGAAGAGAAGTTTGGAGCATGTTCCTTCCCAGAAGACAATTTGG CCATTGAAGATGTCAAGGTTCAGACGTGTACTTACAGAAGGAATTTATGA
Protein sequence (LotjaGi4g1v0429500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVLLLLVFMMVVLPSLHVVESVRTPVLENFEYCAVNCRAYSASVTDFGGVGDGTTLNTQAFRKAIEHLSQYSSNGGSQL YVPPGRWLTGSFNLTSHFTLFIHKDAVILGSQDENEWPVIDPLPSYGRGRDTQGGRFSSLIFGTHLTDVIITGDNGTLDG QGDLWWKKFHNKQLQYTRPYLIEIMYSDNVQISNLTLVNSPSWNIHPVYCSNVIVQGITILAPVTSPNTDGINPDSCTNT RIEDCYIVSGDDCVAVKSGWDEYGISYGMPTKHLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVRIKT AVGRGGYVRDIYVRRMTMKTMKWVFWMTGDYGSHADNNYDPNAIPVIENINYRDMVAENVTMAARLEGISGAPFTGICIS NVTIELAKKAKKVPWTCTDVSGISSGVTPEPCELLPGQAEEKFGACSFPEDNLAIEDVKVQTCTYRRNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 3 | 14 | 12 | - | – | |
| PANTHER | 7 | 465 | 459 | 3.4E-270 | – | |
| PANTHER | 7 | 465 | 459 | 3.4E-270 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 469 | 447 | - | – | |
| Gene3D | 29 | 425 | 397 | 3.9E-114 | ||
| SUPERFAMILY | 36 | 436 | 401 | 1.26E-105 | ||
| Pfam | 44 | 100 | 57 | 9.4E-7 | ||
| Pfam | 135 | 419 | 285 | 1.4E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0429500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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