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LotjaGi4g1v0430100.3

Overview

Field Value
Gene ID LotjaGi4g1v0430100
Transcript ID LotjaGi4g1v0430100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT4G11280.1 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6; Swiss-Prot: sp|P31531|1A1C_SOYBN 1-aminocyclopropane-1-carboxylate synthase; TrEMBL-Plants: tr|A0A1J7GH20|A0A1J7GH20_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0430100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80423115..80426601) extracted from Lotus japonicus Gifu genome v1.2.

AATCAATCTAGCTAACTCTTTGTGCACCACCACATTCTATATAAATAAGCAGATCTCCTGTGAGTACCACAACTTCATAG CAACACAACATTTCATTATTGCTTCTGTTGATACATAATTCATTCATTTACAACTCCAGATTTTCAAACTCTAAAAGCTT TGAAATATCATCAACATAGACGCTATGGGACTAATGAACAAACAACAAAAACCTCAATTGTTGTCTAAGATAGCCACCGG CAACGGACACGGTGAAGATTCCCCTTACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCACCCCACCAACAATC CCAATGGGGTTATCCAAATGGGTCTTGCAGAGAATCAGGTAATCATCATATAACAATATGGAGCTCACATACATATATAT ATATACATACATTATTTTTCCACATTAATGAGTTCTAATTCAATTATCTTTCATTGTTGCAGCTTACTTCCGACTTGGTT GAAGATTGGGTAATGAGCAACCCAGAAGCCTCCATTTGTACTCCAGAAGGAGTATATGATTTCAAGGCCATATCTAACTT CCAGGATTATCATGGTCTTCCAGAGTTCAGAAATGTGAGTGTGATAATACAATATTTAATTGGAATCAAACTAGCTAGCT AGCTTGATCACACACATCAATTATTTGACTAGTGATATTTGATACACAATAATCATGTATTATCATAGCTAACTTGAAGT TAATTTGCGCAGGCTGTGGCTAAATTCATGGGAAAAACAAGAGGAAACAGAGTGACATTCGACCCTGATCGTATTGTCAT GAGTGGTGGAGCAACCGGAGCACACGAAGTCACTGCTTTTTGTTTGGCAGATCCCGGTGATGCATTTTTGGTGCCCACCC CCTATTATCCAGGGTAATAATATATCCAAATTCAAATCAATTCAATTCAATTTCCACTTCCATTTTTTAAAATTATAATA TTAGTAATTAATTAATTTTACACATAATTAATGAAGGTAGCTTAAGTGGGCCATGATGTTCTTCAATTAAAATACAATAA TAATACTCGCACATATCAAATAGTATACAAACTACATCAATTATTTATCAAAAATAGTTTTTGTGCACCATAAATTTTGC CACACTTGCAACACTAACTATTTTTATCAGTTTCTAACCGCCATTAACTAGAGAGTTAAAATCTGCAATTTTTTATGGTT AGAAATCAACATAAACTATAGTGCTACATGTATCTCAAAATTTCTGATGCAAGATGCGAAAGACTTTGACTCATTATTTA TTTCTTGTCTTTTTCTTTCTCATTCGGTCAATGTCTATAAAATATTTTCTATTAAAATACTACTTCAATAATTGTAAGTC TTTTTGTCAATATTCCATTTCTTGTGGATGCCATGTCAGCATGAACAGCCACGGTGTCAAATTTGACCCCGGGAATTTGG TTTGGCACCCCACCTATTGGGTTTCGCACCCCACTTTATTAAAAACGGGAATTTAAATTCCGATTTTAATACGAAAAAAA CGGAAATTAAAAAACCGTTATGTATTTTAGCATATGTGGCACATTTTCAACCGTTCATTGCATATAAAAAACAAATCGGA ATTTTAAATTCCGTTTTGAAAACGGAAATTAAATTTCCGTATTGAATACATGGGGTGCCAAACCCAATAGGTGGGGTGCC AAACCCAAATCCCCACTACCCCTTGGCCCTTGTTTTCAAAGGAATGACTTTGAAGTATTCAACTTCTATCATTCATCTCT TATTTGGCACTAGTAGTAAACAGTCATATTTAGAAATCAACGGCCGTCAATGCCTTTTACATGTGAGTCTAAGAAAACTA GTGCTAATGATTACCATGAGTTACGATGCGGTGGCGGCTCACATCGTCTTACATCGTCTTTAACCTTGAGGTTGTGTGTT GAGTTATCATCATAAAAATCAAACTCATTTAGTAGTTAGTCATTTATCATTTAGTGCAAGTTTGTGCGAGTTAGTTACCC TCGACACAATGATATTTAATCCATGCATCATTATAACAGCTTTATGAACATCTACACCTGAATTGTTTTTCTAATGATCA TCTATGTTTCCTAATGCAGTTTCGATCGAGATTTGAGGTGGAGAACAGGAGTTCAGCTTCTTCCAGTTATCTGCGAAAGC TCCAACAATTTCAAGCTCACAAAGCAAGCCTTAGAAACCGCATTGAACAAAGCCAAACAAGACAACATCAGAGTCAAAGG CTTGCTCATCACCAACCCATCAAACCCACTAGGCACTGTCATGGACCGAACCACACTCAGAACCGCATTAACCTTCATCA ACGAGAACCGCATCCACCTCATCTGCGACGAAATCTACGCCGCCACAGTTTTCGGCCACCCCACTTTCACAAGCATTGCT GAGATTATAGAACAGGACACGGACATTGAATGTGACCGTGACCTCGTTCACATTGTTTACAGTCTTTCAAAGGACATGGG GTTCCCTGGTTTCAGAGTTGGAATTATATACTCATACAATGATGCTGTTGTTAACTGTGCTCGTAAGATGTCAAGTTTTG GATTGGTTTCAACTCAGACACAGTATCTTTTGGCAGCAATGCTTGCAGATGAGGCTTTTGTGGAAAGGTTTCTGGGAGAG AGTGCAAAGAGGTTGGGCCAAAGGTACAGAGTTTTCACTGGGGGGTTGTCTAAAGTTGGCATTAAGTGCTTGCAGAGCAG TGGGGGTCTGTTTGTTTGGATGGATTTGCGCCATCTTTTGAAGGAGAAGACGTTTGATTCGGAAATGGAGCTTTGGAGGA TGATCATTCATGAAGTGAAGATCAATGTTTCACCTGGCTCTTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGC TATGCCAACATGGATGACAGGGCTGTGCAGGTTTCTTTGCAGAGGATTCGCGCGTTTGTTCTTCAGAACGTGGAGGTCAA GGTGCCTGAGAAGAGGCCTTGCTGGCAGAGTAACTTGAGGCTGAGCTTCAAGACTAGAAGGTTTGATGATATCATGATGT CACCTCACTCACCTATGCCACAGTCACCTCTAGTTAAAGCCACTACTTGAATTGGCATAGTTCTCTGCAACATTTAGAAG AAATAAAGGTGGAAGATTTTTTGGTTCTTTGATTAGTTATTTTGGCAAGATTACATGGCTGCTGCTGGATTTGTTCATTT GAGAACAATAGGGAATTCCTGATATTGTTTCTGTAACTAGCATCACATAAGAACTTGTGGTGCTGGATGGTTGCACCTTC AATACTAGGGGATTTTTTCTTTTTTCACTTGCCAAATAATGGGTTCATGGTGAAAGAAGTTCATAGAATTTGTAAGGTTA TTGGTTTTGTAAGAGTCCTCAAGAGTCTAGAAGATATCTGTATTATGTTTATTGAAATTGTTAGGCCAATTATGGTTAAT TGTTAATAAAGGTCTTCAACACATGTATTGTTATCCAGTATTTCATT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0430100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGACTAATGAACAAACAACAAAAACCTCAATTGTTGTCTAAGATAGCCACCGGCAACGGACACGGTGAAGATTCCCC TTACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCACCCCACCAACAATCCCAATGGGGTTATCCAAATGGGTC TTGCAGAGAATCAGCTTACTTCCGACTTGGTTGAAGATTGGGTAATGAGCAACCCAGAAGCCTCCATTTGTACTCCAGAA GGAGTATATGATTTCAAGGCCATATCTAACTTCCAGGATTATCATGGTCTTCCAGAGTTCAGAAATGCTGTGGCTAAATT CATGGGAAAAACAAGAGGAAACAGAGTGACATTCGACCCTGATCGTATTGTCATGAGTGGTGGAGCAACCGGAGCACACG AAGTCACTGCTTTTTGTTTGGCAGATCCCGGTGATGCATTTTTGGTGCCCACCCCCTATTATCCAGGTTTCGATCGAGAT TTGAGGTGGAGAACAGGAGTTCAGCTTCTTCCAGTTATCTGCGAAAGCTCCAACAATTTCAAGCTCACAAAGCAAGCCTT AGAAACCGCATTGAACAAAGCCAAACAAGACAACATCAGAGTCAAAGGCTTGCTCATCACCAACCCATCAAACCCACTAG GCACTGTCATGGACCGAACCACACTCAGAACCGCATTAACCTTCATCAACGAGAACCGCATCCACCTCATCTGCGACGAA ATCTACGCCGCCACAGTTTTCGGCCACCCCACTTTCACAAGCATTGCTGAGATTATAGAACAGGACACGGACATTGAATG TGACCGTGACCTCGTTCACATTGTTTACAGTCTTTCAAAGGACATGGGGTTCCCTGGTTTCAGAGTTGGAATTATATACT CATACAATGATGCTGTTGTTAACTGTGCTCGTAAGATGTCAAGTTTTGGATTGGTTTCAACTCAGACACAGTATCTTTTG GCAGCAATGCTTGCAGATGAGGCTTTTGTGGAAAGGTTTCTGGGAGAGAGTGCAAAGAGGTTGGGCCAAAGGTACAGAGT TTTCACTGGGGGGTTGTCTAAAGTTGGCATTAAGTGCTTGCAGAGCAGTGGGGGTCTGTTTGTTTGGATGGATTTGCGCC ATCTTTTGAAGGAGAAGACGTTTGATTCGGAAATGGAGCTTTGGAGGATGATCATTCATGAAGTGAAGATCAATGTTTCA CCTGGCTCTTCTTTTCATTGCTCTGAGCCAGGGTGGTTCAGGGTGTGCTATGCCAACATGGATGACAGGGCTGTGCAGGT TTCTTTGCAGAGGATTCGCGCGTTTGTTCTTCAGAACGTGGAGGTCAAGGTGCCTGAGAAGAGGCCTTGCTGGCAGAGTA ACTTGAGGCTGAGCTTCAAGACTAGAAGGTTTGATGATATCATGATGTCACCTCACTCACCTATGCCACAGTCACCTCTA GTTAAAGCCACTACTTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0430100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGLMNKQQKPQLLSKIATGNGHGEDSPYFDGWKAYDENPFHPTNNPNGVIQMGLAENQLTSDLVEDWVMSNPEASICTPE GVYDFKAISNFQDYHGLPEFRNAVAKFMGKTRGNRVTFDPDRIVMSGGATGAHEVTAFCLADPGDAFLVPTPYYPGFDRD LRWRTGVQLLPVICESSNNFKLTKQALETALNKAKQDNIRVKGLLITNPSNPLGTVMDRTTLRTALTFINENRIHLICDE IYAATVFGHPTFTSIAEIIEQDTDIECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLL AAMLADEAFVERFLGESAKRLGQRYRVFTGGLSKVGIKCLQSSGGLFVWMDLRHLLKEKTFDSEMELWRMIIHEVKINVS PGSSFHCSEPGWFRVCYANMDDRAVQVSLQRIRAFVLQNVEVKVPEKRPCWQSNLRLSFKTRRFDDIMMSPHSPMPQSPL VKATT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43795
11 471 461 1.2E-264 –
PANTHER
PTHR43795:SF61
11 471 461 1.2E-264 –
SUPERFAMILY
SSF53383
22 436 415 1.22E-106
IPR015424
Gene3D
G3DSA:3.90.1150.10
38 431 394 2.1E-146
IPR015422
Pfam
PF00155
50 432 383 6.9E-105
IPR004839
PRINTS
PR00753
52 78 27 1.9E-108 –
Gene3D
G3DSA:3.40.640.10
72 326 255 2.1E-146
IPR015421
PRINTS
PR00753
85 101 17 1.9E-108 –
CDD
cd00609
90 434 345 1.60407E-62 –
PRINTS
PR00753
122 142 21 1.9E-108 –
PRINTS
PR00753
144 165 22 1.9E-108 –
Coils
Coil
177 197 21 - –
PRINTS
PR00753
198 222 25 1.9E-108 –
PRINTS
PR00753
234 257 24 1.9E-108 –
PRINTS
PR00753
271 295 25 1.9E-108 –
ProSitePatterns
PS00105
277 290 14 -
IPR004838
PRINTS
PR00753
303 326 24 1.9E-108 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0430100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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