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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0430500 |
| Transcript ID | LotjaGi4g1v0430500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein-serine/threonine phosphatase; TAIR: AT1G64040.1 type one serine/threonine protein phosphatase 3; Swiss-Prot: sp|P48488|PP1_MEDSV Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|I3SEG0|I3SEG0_LOTJA Protein-serine/threonine phosphatase; Found in the gene: LotjaGi4g1v0430500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80463482..80466567) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACGAGAACGTGCTTGATGAAATCATCCGGAGGCTCGTGGCGGCCAAGAACGGGAGGACCACCAAGCAGGTCAACCT CACGGAGGCGGAAATCCGTCTGCTCTGTGTTTCCGCTAAGGAGATCTTCCTCAGCCAGCCCAATCTCCTCGAGCTTGAAG CTCCTATCAAGATTTGCGGTAAATTTCTTCATCTTCTTTGAATAATTCTGATTATTTGTTGATTTGCGATGTTGAATTGA ATGGAAATCGATGAGAAAATCCACATGCAATTCTGTATGCTTGTTCACACGGAAAAACTTAAAGAAACTTATTAGGGATC CTGGATTTTTGGTTTGTTTAGTGAATGACTAGGTCTTGGTATGAAAATTGTGTGCCTCTTTTGAAACTTGTTTGGTGCCT TGACTTGACTTCAGTGTTGTTGTTAATTACTGATGGCGGAAAGCCAAAATCCCGTCATACGTGACAAATAATGGTGGAAT ATGGCGGCCGTATGGAGGGGTATTGGCCATGGCAGAAAGCTAAAAAACCGCCACGGGAAACTGCTAAGTGGATATTTGAT AACACTGTTTGACTTTGCTCTGGGTTTATAGTTTGGATTGTGTCACCTTTTTGTTTAACCAGACAGGTGGGGGAGAGGAG AGGGATGTGTGATAATGATACTGGATACTGATGGTTCTGAGATAATTGACCAATGCTTGATTATGAGCTCTTCATTTTTG TGGAATTGTGTGTGTAGAAGTCATGTGAATTGATTAACTGTTTGGGTTGTTGTTCAATAGACATAGACGTAATGGCTTGT ATTCTAATAGGCACAATACTACTATATGCAGGAAACTGTTTCCAACATGCTTGTTGTTTGTATTTAGAACTGTCAACACT CAACAGGAACCTGTTTCTGGCTTGACAAAAGAAAGGGGTTAAGAGCTTTTCTGGTGTTTTAGGCAAGCACCCTTAGCGAT TTCATGTTCTGGTTCATGCTAGTTGCATGCTGTGGTGACATTTGCCTTAGTCGCTAATAATTGTAGAATCCTCAAAACCC TGTACTTCTAACTTGGTAACTTTGAAATCGAATTTAGTTTTTAGGGCTTCAGTGGCGGCTGCGGCATTTATAGTTTGTAA AATTCAGAGTTCATTACTTTGGAGCTTCTTCAACTTGTTATCATGCTTTTTCGCTTGAATGTTTTTCAGTTTTATTTAGA TACGAATGTTATGCTTAAGTAGTTGGTTTTTGGAAAATCATGTTAAAATTATTAAACTCTTCAATGTTATCTTCTTTCCC CCTTTTAATATTAATCCCTTGCTTCTGTCAGGTTTGTGATTTTTGTTCCTTTTGCTTTGATGCATTAATAAGGTCTCATT TTGCTTTTTACCACCATGTTATCTGTAATTGTTAAATAGGGGATGACTTATGTTTTAAACAATTCATTTGCAGGTGATGT CCATGGCCAGTTCTCAGATCTTTTAAGGTTGTTTGAATATGGGGGATACCCACCTGAAGCAAATTATTTATTTCTTGGAG ATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCTTACTCCTATCATACAAGATCAAATATAAGGAGAATTTC TTTCTTCTCAGGGGCAACCATGAATGTGCTTCCATCAATCGTATCTACGGTTTCTATGATGAGTGCAAGAGGAGGTATAA TGTTCGCCTCTGGAAGACTTTTACTGATTGCTTTAATTGTCTACCTGTTGCTGCTCTAATAGATGAGAAGATCCTTTGCA TGCATGGTGGACTATCACCTGAACTAAAAAACTTAGATCAGATAAGGAATATTGCTCGTCCTATTGATGTGCCAGATCAT GGCCTTCTCTGTGACCTTTTATGGGCTGATCCTGATAAAGATATTGACGGATGGGGAGAAAATGATCGAGGTGTTTCTTT TACATTTGGGGCTGATAAGGTTGTTGAATTTCTTGAACATCATGATCTCGATCTGATTTGTAGAGCTCACCAGGTAATGA AATATGAATTTGGTGGTTTATATGATTTAAAAGTTTCCTCTGGATTGCCCATCCATGGCTATTTTGTTCGTAGATAGTAT CGTTTGCTAGTTTGTTTGTACTGCTATACATACTAGAATTGGCCATACATGATAAGCTTGGAATTTATTGATTATTACTC AAATTTTCAAATGAAAAATAATTTCATGCTTTAAGTAGATTTATAATGATGACTGAGAATCAAAGGAAAAAGAGAGAGAT CGGATTGATAAGGATAGGATAAAATTAGGCTGAGTTGTGACTGCTCTATTATGTTTAATGCATATGATGACTGAATACGG TTTTCTGTTTCCTTTCTGTATCACCACCTATGTTGACCCCTCTAAATATATGGTCATTTCTAATCCTGTTTGATTGATGA GCCTTTCTTTAGCTGCCTGTCATTGCTAATGTGCTTGTGTTTAGTATGGTGTCTTCGTCTGTCTATGACTCTATGCTGAA TGCATTGGGCTTTTGCTTGGCTCACAAATATAAATTCTATTTAATCAATTAATGATTCTGGTATGATGTTTTCCATATAA ACTTTTCGGGTGTCACTTTGTCAGGTTGTAGAAGATGGGTATGAGTTTTTTGCTAAACGTCAGCTGGTGACCGTATTCTC CGCACCCAATTACTGTGGTGAATTTGATAATGCTGGTGCTATGATGAGTGTTGATGACACCTTGACATGCTCTTTCCAGA TACTCAAGTCTTCTGAAAAGAAAGGGAAAATGGGATTTGGTAACAACTCATCGAGACCAGGAACTCCACCTCATAAGGTA AAAATATAGGAATTATTATTATGCATGCACCTGTTTGTTAATACACATGCATTTATCTGTATCCACGTGGGTCTATGTAT TCTATGTTCAAATGAAAATATATCACGAGCTTGAGTTACAATCAAGAGAGTAAAAGTATCATAACTTTAACTAGTATTAA CAAATATGGAGTTTGATCTGTGTATCCCTTAAGTTGGTGTTTACACACATAAAATGAATGAGCTTGTGTAAATTTATGTG TATTGTTTAAGTAGCATTGACATGCTAGGGGCGATTCCAATGTTAA
CDS sequence (LotjaGi4g1v0430500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTATGTTTTAAACAATTCATTTGCAGGTGATGTCCATGGCCAGTTCTCAGATCTTTTAAGGTTGTTTGAATATGG GGGATACCCACCTGAAGCAAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAGAGCATAGAGACAATATGCT TACTCCTATCATACAAGATCAAATATAAGGAGAATTTCTTTCTTCTCAGGGGCAACCATGAATGTGCTTCCATCAATCGT ATCTACGGTTTCTATGATGAGTGCAAGAGGAGGTATAATGTTCGCCTCTGGAAGACTTTTACTGATTGCTTTAATTGTCT ACCTGTTGCTGCTCTAATAGATGAGAAGATCCTTTGCATGCATGGTGGACTATCACCTGAACTAAAAAACTTAGATCAGA TAAGGAATATTGCTCGTCCTATTGATGTGCCAGATCATGGCCTTCTCTGTGACCTTTTATGGGCTGATCCTGATAAAGAT ATTGACGGATGGGGAGAAAATGATCGAGGTGTTTCTTTTACATTTGGGGCTGATAAGGTTGTTGAATTTCTTGAACATCA TGATCTCGATCTGATTTGTAGAGCTCACCAGGTTGTAGAAGATGGGTATGAGTTTTTTGCTAAACGTCAGCTGGTGACCG TATTCTCCGCACCCAATTACTGTGGTGAATTTGATAATGCTGGTGCTATGATGAGTGTTGATGACACCTTGACATGCTCT TTCCAGATACTCAAGTCTTCTGAAAAGAAAGGGAAAATGGGATTTGGTAACAACTCATCGAGACCAGGAACTCCACCTCA TAAGGGGCGATTCCAATGTTAA
Protein sequence (LotjaGi4g1v0430500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTYVLNNSFAGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLSYKIKYKENFFLLRGNHECASINR IYGFYDECKRRYNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPELKNLDQIRNIARPIDVPDHGLLCDLLWADPDKD IDGWGENDRGVSFTFGADKVVEFLEHHDLDLICRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDDTLTCS FQILKSSEKKGKMGFGNNSSRPGTPPHKGRFQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 248 | 248 | 3.9E-138 | ||
| PRINTS | 6 | 33 | 28 | 6.2E-94 | ||
| Gene3D | 7 | 257 | 251 | 1.2E-121 | ||
| PANTHER | 10 | 270 | 261 | 2.9E-175 | – | |
| Pfam | 10 | 197 | 188 | 9.6E-37 | ||
| PANTHER | 10 | 270 | 261 | 2.9E-175 | – | |
| SUPERFAMILY | 10 | 248 | 239 | 1.82E-104 | – | |
| PRINTS | 35 | 62 | 28 | 6.2E-94 | ||
| PRINTS | 68 | 92 | 25 | 6.2E-94 | ||
| ProSitePatterns | 69 | 74 | 6 | - | ||
| PRINTS | 102 | 128 | 27 | 6.2E-94 | ||
| PRINTS | 131 | 158 | 28 | 6.2E-94 | ||
| PRINTS | 188 | 208 | 21 | 6.2E-94 | ||
| PRINTS | 210 | 226 | 17 | 6.2E-94 | ||
| MobiDBLite | 250 | 273 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0430500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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