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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0435200 |
| Transcript ID | LotjaGi4g1v0435200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pleckstrin-like (PH) domain protein; TAIR: AT4G23895.1 Pleckstrin homology (PH) domain-containing protein; Swiss-Prot: sp|Q75ZQ2|URED_HALMA Urease accessory protein UreD; TrEMBL-Plants: tr|A0A0R0IFR9|A0A0R0IFR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80862164..80866130) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAACACAACAACATAGTCCAGAAGTGAACTATATGTGCATAGAAGAAAACATATAAATTGTAGTAGTTGCTTATTGG TATTGGTAAAAGTGTGTTTTCGCGATAATCACAATAGCAAACCGAACAAACACCCGCGTCTTCTTTCTATTTGCGCAAAG GAGACAAAGTAAAGTGTGTTTACGTGCATCCATCATCGTCTTCTCCAACCGGTATGCAAATTCAACTCTCTCTTTGCTTT CACTAATTTATTTATTGTATCTTGTTCTCTTCTGCTTAATCTTGTTTCGCAGTTGAAAACTAACAAGCTGTAGCTCTTGT ATCACATGTTCAATTTAATAATTGACCCAATAATTTGTTATGGCATCTTTCCATGCTTTTTTATCCTATGATCCTTGTTC TGTTGTTCAGTCTGCAGAATTGGGGTTTGTAAATCAGCGAACATAGGTTGATCTAGTTTAATATGCCTGTGACTCTTACT TGCTTTCGGTTTTCACTCTTTGGTGTTTTTCTTTAATTTATTTCCTCACATACTCACATCCTAGTTTTTAGGTTTTTGTG ATTACATTTTTTGTTTTCAAACATTTATGTTTCTTTCCCCATAATGCTGAAATGACTTTAGGTTGCATACTGAGCAAAAC TTGTTAGCAAGTTCTGACTTATTGATGGGAAGTGATGGCAATACTGCTGTTATAACTTGTTGCTGTTGTTCCGGTTTCAG GATAAATCATCCTTCAACACATTATCACTACTTTCATCAACAAATATACGCTTGCCGCTCTTTCCCAAAGAAGCTCAGTT TCATGGATAGTCCTGCAAAATTAAAAATCATCCCTGATCACTTTCAACTTCCAGAATCAAGTATAGAATCTCCTGTGAGC AGAACATCTTCTAGTTCTATTACAGAACCTGGAACCGATCAATCTTCGAGGTACTGTTTCTTAGTTAAAAAAGAAGTAGA ATGAAAAAATAATAGAAAAGTTATTGCGAGACTTTCTTTGAGTTCATTTGAAATAAGTTACTGAATTTAGCTTACTTTAG GTCCTCACGCCATCTGTGGACTCGGAGAAAATGTAGGACACGTCTTATGTTGAACTTGTTTACTCTTCGGGGGCTGCCAT GGGGGTCCGATACTGGAGGTCAGGAAAAGGTTTGATTTGAGCAGCTTTTGTGCTGTGCATCTTTTGTCATTGGTGAAGGT TCTGTTATATCCTACCAATACAAACTTATGTTTCAGGTTGAGCTAACGGCTGCGGAACTAGAGTCACTTCGACAGGAGCT TGCTGATATAGATGAGAGGGAAGCTCTCTTGAAAGCCCGGTGAGTGATCTTCACCTTCAGACTATTAAGGGATTTGCTGT TATGATATAAATGTTAATTAATTATCTGTTTTCTCTATGTTATCTTTCTTCTTTTGTTTTTCCATCTCTAGTGTATTGAA GTCATTGATTAATGAAGAAAAATTTGGATTTAGATGCTAGCATTCGATTTGGAGTGACATTTGTGACTTTTGGAGTAATA TGAATAAAATGAGTTTCAAATTCCTTCTTCTTTCATTGTCCTCCACTTCACTCCTTACTAGTGACTTTTCCTGGTTTGTT AGAGTCAGCTACCCTTTAGTTTTCATTGGAGTTGAAATTGCTACTTGAGAAACAAGGGAACTTTGCTGTTTAATATCTAC TTAACCCTCTCTTCTTGGTATTATCCTTAAGATACACCAATATGTTTTTCCTAAATAAATATCTTATTTAAATAATTTTG TTTTACACAGGTTGGAACATGTTGATGAAGTTTTGCGGTCAGCTTGTCTATCTGGCTATTTATACATTCGAACTGTACTA ATTGTCCTGCTCTGCATTAATTTACATTTCATTGTTTTTTTATTCGATATTTTATTTTACCGAACAAGTCGGTACTAATT TGTTTTCATCCTTTCTCTGTAGAGATGGGCAACACTGCCAGGAGAACTTCCACCTATAGATGATACTGAAGTAGATGATT GGCTTCCTCGCTTTGTCGTTCTCCATGGAACATGTATATTCTTATATTTATTGTCTACAGGTAATTTAGTTAGCGCTGTT CCTTCTTTCTCCCTCCAATTCTTCTCTTCCTACTAGTCTTAGTTTTCATTTTTTCACATAGACTTAAACGGATGATAGTC CTAATCAGAACATCAAATTTACTGGGCTAACCTTATTTTTGTGTAGATGAATTGCATTTGTGTTTTTTTTTTTCGAGGAA AACGAGAAATGGAAGTATTAGAAGCCTCTTAATCACCAATTTGTGCAACTCCTTTTTCATAATTTTTTAAATATATTTCT GGAATTATGAAAAAATCATATTCTCTATTGGCTAATACAGTTTCCAATACTTGCTCTAATTTTGTGATTGGCTTTCTTTC TCTCAAATCAGTAACTCATATACTGAATCTTCATTACTATTAAAGATGTTAGATGTGTAATATATGTGATGTGATGTCAT GCTTGTTCGAATTAAAACCTGTAAAAAACGATGACTCGGAAAAGATTAAGCTGTTAGAAGGCTCCAGAATTATTTATATC CATGTCTTTAGCTGTGAGAGGCTTTATAAGCCACAGGTCCAGCCAAATTTAATTATAAGAGTAGGAACAACAGGGAATAT ACTTTTGACAGCTTAGTCGAGGAGGTCCAGCCATATCATGCAAAGAACTAACAATCCCAAATCCTTTTTATTAATCTCTT TGAAAAAGAAAATCCTCTGGTTAGCTCAATTGAGTATATTTTCTTCTCAAGCTTTCAGAAGATTGGATTCTATTTACAAG GCAACAATGCTTGTTTGATGATAAAGGATTTTTTTTTTTGCAGATATAAGCCCTCAGGACTCAACTCTTCTATCTGATAT TGTTGAAGTAGGGAGATTGCCATGTTTTAAGCGTGAAGATGATGATGTTCGATATGCCTTTTATATCTTAACTTGTCATG GGTTACGCTACGAGTGCTCAAGCAACTCTATGATACAGGTGTGTCCAATATAATTTGATTCTTCGTAGTTGTTGTCATTT TATTATTATTTCCTAAGTGATTTACATCATCATTTTAATTTAGTTAAACTTCTAAATATAGTGTGTATATTTCCTCACAT ATATTATTGTGTCGAATGATGTCCCTGCATTATTCTGTTTTTAGGTGGACTCTTGGTTATCAGCTCTACAACAGCACTGC AAACTGAAATCTGATACATCAGTTCCTAACGGTTCTATTGAGAAGTAACACTTTACTTGTTTGGTTAGTATTAGTGGCTT GAAATGTAAGGTACTTTGTGAATATTTCACTAACATGTCTTGAGATATATTGAGCAAATGAAAGAAGGCTAATTCTTTAT TTTCCACTTTTGGCTCATTCTAGGACTTATGTGAGTCATTAGGTTTTAAACCTTGCAATTTTGGTACCTTTCCATATGTA CGCAATTAGAGTTTATGATATTGAAGTATGAAGTGTAAAAGCTGAGTGTGCTTGTACCTGAACAATGAGCGCTGTTGATC TAGAATCTTGGAAGGATCCTACACTGTTTGAGTAATGTTGCACTTTGAAGAGAGGAAAAAAAGAGAGCAAAGAATAATAA AAACACCTATACTTCTTTGATCTTTGGTTCATTGTTATGAGCCCAAGGTACACTACACTATCTTGCGGAGGAGAAAATGA ATTGCAGTCTCCAATGTAATGAGGTGGTTGGTGGTTGAGAAACTAGAAGAGGCCTAAATTATTTGAAGTGTATGTTTGGA TTTCCCTTGAATTCAATTTGATTGTGCTAAGTCTCACTTCTCTGTTGATATGTTGGGATGTGTATTTTCCGACACAAATG CGAAACCAAACATGCACTAAGAAGGTAGGACAAATTTGGAAAGCTTTTTCTGTCAGAAAAAGAAGGGCATGCTTTTTGGT AGGAACAGAATTGAACTGCAGTTGGAATTGCATCTGCACAACATGTA
CDS sequence (LotjaGi4g1v0435200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGTGATGGCAATACTGCTGTTATAACTTGTTGCTGTTGTTCCGGTTTCAGGATAAATCATCCTTCAACACATTA TCACTACTTTCATCAACAAATATACGCTTGCCGCTCTTTCCCAAAGAAGCTCAGTTTCATGGATAGTCCTGCAAAATTAA AAATCATCCCTGATCACTTTCAACTTCCAGAATCAAGTATAGAATCTCCTGTGAGCAGAACATCTTCTAGTTCTATTACA GAACCTGGAACCGATCAATCTTCGAGGTCCTCACGCCATCTGTGGACTCGGAGAAAATGTAGGACACGTCTTATGTTGAA CTTGTTTACTCTTCGGGGGCTGCCATGGGGGTCCGATACTGGAGGTCAGGAAAAGGTTGAGCTAACGGCTGCGGAACTAG AGTCACTTCGACAGGAGCTTGCTGATATAGATGAGAGGGAAGCTCTCTTGAAAGCCCGGTTGGAACATGTTGATGAAGTT TTGCGGTCAGCTTGTCTATCTGGCTATTTATACATTCGAACTAGATGGGCAACACTGCCAGGAGAACTTCCACCTATAGA TGATACTGAAGTAGATGATTGGCTTCCTCGCTTTGTCGTTCTCCATGGAACATGTATATTCTTATATTTATTGTCTACAG ATATAAGCCCTCAGGACTCAACTCTTCTATCTGATATTGTTGAAGTAGGGAGATTGCCATGTTTTAAGCGTGAAGATGAT GATGTTCGATATGCCTTTTATATCTTAACTTGTCATGGGTTACGCTACGAGTGCTCAAGCAACTCTATGATACAGGTGGA CTCTTGGTTATCAGCTCTACAACAGCACTGCAAACTGAAATCTGATACATCAGTTCCTAACGGTTCTATTGAGAAGTAA
Protein sequence (LotjaGi4g1v0435200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSDGNTAVITCCCCSGFRINHPSTHYHYFHQQIYACRSFPKKLSFMDSPAKLKIIPDHFQLPESSIESPVSRTSSSSIT EPGTDQSSRSSRHLWTRRKCRTRLMLNLFTLRGLPWGSDTGGQEKVELTAAELESLRQELADIDEREALLKARLEHVDEV LRSACLSGYLYIRTRWATLPGELPPIDDTEVDDWLPRFVVLHGTCIFLYLLSTDISPQDSTLLSDIVEVGRLPCFKREDD DVRYAFYILTCHGLRYECSSNSMIQVDSWLSALQQHCKLKSDTSVPNGSIEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 284 | 237 | 1.8E-136 | – | |
| PANTHER | 48 | 284 | 237 | 1.8E-136 | – | |
| MobiDBLite | 65 | 94 | 30 | - | – | |
| MobiDBLite | 65 | 90 | 26 | - | – | |
| Coils | 126 | 153 | 28 | - | – | |
| Gene3D | 162 | 287 | 126 | 3.2E-8 | ||
| ProSiteProfiles | 163 | 278 | 116 | 7.241 | ||
| SMART | 164 | 280 | 117 | 1.5E-6 | ||
| SUPERFAMILY | 166 | 278 | 113 | 4.4E-11 | – | |
| CDD | 166 | 273 | 108 | 0.00170155 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0435200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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