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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0435700 |
| Transcript ID | LotjaGi4g1v0435700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat superfamily protein; TAIR: AT1G64430.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630; TrEMBL-Plants: tr|I1KPK3|I1KPK3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0435700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80884713..80890624) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTCTCTTCTCCTTCTCCTTCTCCGCCATCAACCACCCATTCTTCATTCGTTCCTCACACTTTAATGTGGTTATGACT CTCAACTTGTCCACTCCTTCCTTCTCACGTTTACTTCCTCATCATCACCCTTCTTCTTCTGTTCTCCCCAAATTCTCTCA CAACGCTTTCCCCACTCTCTCCTTCCCCGCTTTCTCTCTTCCCAACTCGCCGAGATTTCTCAACGCCAAAGCCTCCGTCA GCGAGAGCCGGAATGAAACCTCCGATGACCACACCGTTTCCGCCTCCGACCAGCAACTCCTGCTACGAATTTCTGCCACC GCTAAAGACGCCGACGAGGCCTTGCAGATGATCGCTGACAACGCTGAAACAAACTCAGGAGGTGGTGTCGTTTCCACCTC TGATTGTTGCTCCATTATATCCGCCGCTCTTAGCCGGAATAATCCCCAGCTTGCCTTGTCTGTTTTCTACGCCATGCGCG CCAGTTTTCGTCAAGGTGAGTACTGACTAGTTACACTAACATCAACATCATCATCACTTCATTTCAATGTTCACTCTTGT TGCTGTTTGTGTTTGTGACTCTGTGATGCTGCCTGTGATTTCATCAGTTGACGAGAATGGTCCTTTAGTTGAGAGATGGA AGTGGCCGAGGCCTAATGCGAATGTTTACACGGTGTTGATTAACGGTTTGGCGGCATCCTTGAGGGTTTCGGATGCTCTA AGCGTGATCAAATACATATGTGAGGTGGGCGTGTCTCCTGGTGAGGAGGTATGGTTCAAGAGTTTTCCTGTTTCCTATTC TCTCTGGTGGCATTATTGTTGTTGCGAAAATTGGACTTGTTTCTGACCTTAATGTCAACTGTTTCGAGTAATGGAAGCTT CATGTGTATTGTTGCAGGTCCCTTTTGGGAAGATAGTGAGATGTCCTAGTTGTAGGATAGCTGTTGCTGTTGCACAGCCA CAGCAAGGTATTCAGGTATTCCCTCGTGTCTATGCTTAATATTATTTGTGCTACTACTTTGATTACTATGTTTCTGTTGA GAGTTTTGTATTCTGTAATTTCATAAACCTCGAATCATGGGGATAAATCAAGGACAGGGTAAGTTTGTATGTCAATATCC ATTTAGTGTGCACTAGCCACTAGTACACTAAATGGCAATGACATTAAGTGCAAACTTGTATAGAGCACATCGTAAAGAAT ATAAATTGTGAATAAGCAAACTCAAAATATGTTTCCTTCAATTTCCTGTGTGGATCTTTTTATATGCTCGAGTATTATTG ACAGTTCTTGTCTTATCGACAAAATGGCCTGATGGGATGTTTTAAATGAGGATTAACATTCAGCATGCACATAACATAAC TTGAAACAAGTTGTTCAACTTTTCATTTTGTGTGGAGTAATTTGGGGCTCTGGTCATTTGTGATACATGAGGCTATCCAT AGAGACACCTAATTTTTTCAATAAACTCTGGATTGTTTCTCCTGATGTTCTCATAAGAATTCTTTACTCATGCATATAAC ATAACTTGAAACAAGTTGTTCAACTTTTCATTTTGTATGGAGTAATTTGGGGCTCTGGTAATTTGTGATACATGAGGCTA TCCTTAGAGACACCTAATTTTTTCAATAAACTCTGGATTGTTTCTCCTGATGTTCTCATAAGAATTCTTTACTCATGATT ATTATAGTTTTAAGGTGGATATGAACATTTCTACTGCAGATAGTATCGTGTGCAAAGTGTCGCTACCAATATGAACTTGT CTCGGGTGACATAGTCAGTATTCAATCAGAAGAAATCAGGTTGGTTAGTCATATCATTCTATGATTTTCTTTTATCTAGT CATTTGACAAAATTAGTCCCTAATTTTTTAAAGTTTCTTTGGCAAGATTAGTATGGTTTTTTCTATGCGTTTACTCTTAG TTTAGTTATTTTGAGTTCCAACCATCTATGAAACCTATTTTTTCCGTGGGAAACACCATACATATTTGTTCCAATATTTG TCCTTTTTTCCCTTTTATTTTGGTGTAACCAATGTTTGCATTTTTTTAATTAAATAATATGTATGTGTATGGTGTTGATC ATGGAGTATTCACTTTTTCTAAGGATCTCCTCCTGCCGAACGCAGCATGGACATTACAGCATGGGAAAGGGGGTTAAGAT TCCTCAAGTTGATGAAGCAAAGTATTCCTTCTGCCGTTCACTCTATTGTGGTATATACTCTCCACTCATCTTTGACATAT GATTGTGAGGTCATCTTCTGATTGTATAATCATGCAAGAGTTATGATTGAGGACCTATATATGATTACTATATAAGCTGG TTAGTTAGTTGTAAGTTTGGATGTATTGCCCCATTAGTTTTTTCAGGCCTCTACTTTTTGAGTTCTACAAATGCATGCCC ATCCTTGAAGTACCAGAAATTTTATTGCAAGTAAATGATATGACTTATGAAAAGGAATTTTTGTACACCTCTGTTGAGTT TTTTTAACTAAACGATGGCCATACCTCTGCTGTGGTAATGGTATCACCTTAGCCAAGACCTCATTTGGAAGGATCTGAAC TGGATGAAGGTTCCGTTCCCTGCTTTAAGTCATTTCAGGTTTCAGCATTTCTTTTGTACTTGTTTATTTTGTACAATGTT GTAAGCCCACAAGTCAATATATCTCGGTGTGTTGTTATTATTATAATTATTATCTATTGGGAAATAGGCCCTGAGATTCG AGAAAATAGTGCTTCATTTATTAGTTTTTATTTATATTGTTTTATTACTGAAATAACCTTGTCAATTGCTGATATCTTTA TGAAGTCTCAAGGTTGCTTATCTCCTAACTACATTTTTCCGTCTTTCTCTGCCATTTAGGTGCAGACCCCTTCTGGTGTG GCACGCACTCACAGATTTGCAACTGAAACGGTTGATCTGCCAGCTCAGGCAGGTGAAAGGGTAAGTGTTGCTGTGGCAGC TCCATCAAATGTATACAGAAAGGTGGGTCCCTTTAAATTTAGTCCAAGGGCCCCGGATTTTTATCCTGGTGAGGCTATGT GCATAACAAACCACAAAGATGGGCGGGAATCACTTCTGTTAAGAGCCCCGAGAAAAGAAGAAAATTCATCATTACTTAAA CCCTCCCTCCTCTTTCCACTTCTTGCTGTGTTTGCCACTGGTGATGCTGCCTCTGGACTTATTGACCCCAGCCTACCTCA GTTGCTATCAATTGTTGCAGTTTCATCTCTTGCTGTTGGATCTACTTTGAACTCCTTTGTTCTTCCCCAGTTAAATCAGG TACTGTGGTTCATTCATCAATTATATTTCGATTGAGGGATGCTGAGTTATCTTCTCTTCATCCAATTAATTTTACTTCTA GAAATAAGGAAACGACAATGCCTTATAATTTTAAATTGATAGTTGTCTCTCTTATTAAAAATTAAATTGATAGTTATTTC TTCACTTGTCACTTTCAGCGATTTAAACTTCATATTAATGGCCCAAAAAATAAACTTCCTATCCTCAGCAAAGGAGGGTG GGTTTGTGCTCTGTTTCATTACTGCTTTGAGTGCTGAAATTAGAAAGAAAAAACGTGTGATTCTTATACCTCCACCCAAT TCTTCACCGACCATGCATTAATCAATGTTCTAAAAAAATACTTAAGTTAATCTACATTTATTTATGATTACAGCTTCCGC AAAGGTCGGTAGAAACAACTGCTGTCAAACAACAACTTTTATCTCAATATGATGTGCTTCAGTCTCGCATCAATGGCCTA AAAGAAGCTGCTGAAAAAGAGGTGTGCTTTTTGCATTATTTGTAACAAATGTGATGATATCGATCTCTACTTATTTTATG GGAGGGGAGAAGTTACAGATACCATTTTGGCAGTTGATCTACTCTAATTTTCCACCTCTTATGTCTTAACAATAGTATTT TGTTTTGGGGAAACTCACAAGTTCATTAAGGGAGAAGTGCTTTTTCCCAGACATGAGCATTCTTGCTCATGAAATTCCTC TCTGGCTGATTTCCTTTTAATACAATGACAGAAAATGAATGCAGAATAAAAATCTCATGAATGCAGAATAAATTTGTAAT TTAATTTAGGCATTCAGATGGTATATTGACCTAATCATTAGTTGCTGATAGAAAATACTTAAAAATATCATGATCATCCT TTGGATATTAATATTATTTGTGCAGAGTTCATTAGTTGTATATCTCATTTCTCGGGACAGGATGATAGAGTAAGATTGTT TGAAAATCATTTTTGAAGAGAGTAGTTTCTTTCCTCTTCTGTCAAAATATAATATGCCTGTAGCTTGAGCTATGTAAATT TACTTACTTTGTAGATTTGGATGTTGGCTCGAATGTGCCAGCTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTAT AGGTGAATTGCTATCGTTCGTACATCTCTGTTTCTTGGATTATTGATGAAATAATATTTTCCCTGATGACCATTTATGTT GATGTCCTCAAGATTAGTATTTAGTCTCTACTTCTCTTTACTTAATCTAGTCTGAAGATGCCATTTATCATTTATTTATA TCTAGGACACGGATAAGTAAAGTCAAGAGAGTCCGAGAGAGCCTGCAGAACTCCCTCCAGGGAAGAATTGAATTGATTGC TAGCTATGCTAGGGTATGTGTTCTTTTAAAGTGTGAATATAATATCTCCTGAAAAATTCTAGTTCTCTGCAATATTTAAA TCAATAAATGCATGTTGAAAGTGCTTTTTGGTCAGATTTCCTCAATGATTGAAATTGAAGTGGAGATGGAAACCGATGTT CTTGCTGCTGAAACTGCCAGCGATGTGGTAAACCACGTAATCATATATTTCTTTTGGGTGGTGATATCTCGCTGTGATAA GTTCAATTGCTTAGCCGAGGGTCCTTGTTTTGCAGGATAGTATTACAGAACAAATAGAGCAAATCATGGAGCTCGAAAAT TTGGAGGAGGTACCTTCTTTAATGCAAGCCTGTGTTTTCTGGCATTATAATTACAAGCATGGCCAATTACTTTCTTAGAC TATCAAGCCCAAAAAAATCAATGAAGCCATTTCTATTTTAGGTGTTTCTATGATCTGAATGCCTAGCTAAGAAATTAAGA TACCCCTCCCTCTTACAATACGTGATTGCGATTTTTCCTCAGACAGGTTGACTGGTATGATAGATGAAAAATTAGCCCAA TGATGTGGTTTTAAGGATGTCTTATACTGTGTTGCGACAATCTAATCCAGCTCAACACAGGCATTGTCTTTACCAGGACG TTTGATATGATAGTAAAAATTTAATCCATATAACGTGTCGGGAGGCTTTGCTTTGTGTTGCAACATAAATTATATTCGCT TACTTTTCTATGCAGAGATGGAAAATGCAAGCAGAAGCCAGTGATGAAGCTGAAAGACTTCTTAGTTCCCAATCCATGCC TTCTGAGGAAGTTTGAAGATATGGATGCATCTGATTTGTACCACTGCATCATTAGCTGTGCTTCTCACATCAATGATCTT CTCTTGACCTGATTGATCAAATGAGCAGCATTCAGTTACTTCTGCCTTTTAGCAGGGATGTTTTCAATTTTTGGCATCTT AGAACAATCACTATCATGTCTTGAGAAGAACTACATTGTATATGATCATCAATATGAGAGTTTGTGGCATCTAATGCACA TATTTGTCGCCACTGAAGACCTTCCTCGTGTTGTGGCTTTCCAAGTCAAGGTAGCTAACAGCACATCATAGTGTAAATTC ATTGATATATATTTGATATATAATATATATCTTATAAGAGCATTCTTTTGATATCGTTCCAATTCTTGATTGGAAGCTCC AACGTTTGTTCGACCACTTTGGATACCTATGGATACTTTTGGCTTGTGATTTTTAGTTGAATCTTTGCATAA
CDS sequence (LotjaGi4g1v0435700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTCAACTTGTCCACTCCTTCCTTCTCACGTTTACTTCCTCATCATCACCCTTCTTCTTCTGTTCTCCCCAAATT CTCTCACAACGCTTTCCCCACTCTCTCCTTCCCCGCTTTCTCTCTTCCCAACTCGCCGAGATTTCTCAACGCCAAAGCCT CCGTCAGCGAGAGCCGGAATGAAACCTCCGATGACCACACCGTTTCCGCCTCCGACCAGCAACTCCTGCTACGAATTTCT GCCACCGCTAAAGACGCCGACGAGGCCTTGCAGATGATCGCTGACAACGCTGAAACAAACTCAGGAGGTGGTGTCGTTTC CACCTCTGATTGTTGCTCCATTATATCCGCCGCTCTTAGCCGGAATAATCCCCAGCTTGCCTTGTCTGTTTTCTACGCCA TGCGCGCCAGTTTTCGTCAAGTTGACGAGAATGGTCCTTTAGTTGAGAGATGGAAGTGGCCGAGGCCTAATGCGAATGTT TACACGGTGTTGATTAACGGTTTGGCGGCATCCTTGAGGGTTTCGGATGCTCTAAGCGTGATCAAATACATATGTGAGGT GGGCGTGTCTCCTGGTGAGGAGGTCCCTTTTGGGAAGATAGTGAGATGTCCTAGTTGTAGGATAGCTGTTGCTGTTGCAC AGCCACAGCAAGGTATTCAGATAGTATCGTGTGCAAAGTGTCGCTACCAATATGAACTTGTCTCGGGTGACATAGTCAGT ATTCAATCAGAAGAAATCAGCATGGACATTACAGCATGGGAAAGGGGGTTAAGATTCCTCAAGTTGATGAAGCAAAGTAT TCCTTCTGCCGTTCACTCTATTGTGGTGCAGACCCCTTCTGGTGTGGCACGCACTCACAGATTTGCAACTGAAACGGTTG ATCTGCCAGCTCAGGCAGGTGAAAGGGTAAGTGTTGCTGTGGCAGCTCCATCAAATGTATACAGAAAGGTGGGTCCCTTT AAATTTAGTCCAAGGGCCCCGGATTTTTATCCTGGTGAGGCTATGTGCATAACAAACCACAAAGATGGGCGGGAATCACT TCTGTTAAGAGCCCCGAGAAAAGAAGAAAATTCATCATTACTTAAACCCTCCCTCCTCTTTCCACTTCTTGCTGTGTTTG CCACTGGTGATGCTGCCTCTGGACTTATTGACCCCAGCCTACCTCAGTTGCTATCAATTGTTGCAGTTTCATCTCTTGCT GTTGGATCTACTTTGAACTCCTTTGTTCTTCCCCAGTTAAATCAGCTTCCGCAAAGGTCGGTAGAAACAACTGCTGTCAA ACAACAACTTTTATCTCAATATGATGTGCTTCAGTCTCGCATCAATGGCCTAAAAGAAGCTGCTGAAAAAGAGATTTGGA TGTTGGCTCGAATGTGCCAGCTTGAGAATAAAATTTCAGCTGTTGGAGAACCTTCTTATAGGACACGGATAAGTAAAGTC AAGAGAGTCCGAGAGAGCCTGCAGAACTCCCTCCAGGGAAGAATTGAATTGATTGCTAGCTATGCTAGGATTTCCTCAAT GATTGAAATTGAAGTGGAGATGGAAACCGATGTTCTTGCTGCTGAAACTGCCAGCGATGTGGATAGTATTACAGAACAAA TAGAGCAAATCATGGAGCTCGAAAATTTGGAGGAGAGATGGAAAATGCAAGCAGAAGCCAGTGATGAAGCTGAAAGACTT CTTAGTTCCCAATCCATGCCTTCTGAGGAAGTTTGA
Protein sequence (LotjaGi4g1v0435700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLNLSTPSFSRLLPHHHPSSSVLPKFSHNAFPTLSFPAFSLPNSPRFLNAKASVSESRNETSDDHTVSASDQQLLLRIS ATAKDADEALQMIADNAETNSGGGVVSTSDCCSIISAALSRNNPQLALSVFYAMRASFRQVDENGPLVERWKWPRPNANV YTVLINGLAASLRVSDALSVIKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGDIVS IQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVARTHRFATETVDLPAQAGERVSVAVAAPSNVYRKVGPF KFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKEENSSLLKPSLLFPLLAVFATGDAASGLIDPSLPQLLSIVAVSSLA VGSTLNSFVLPQLNQLPQRSVETTAVKQQLLSQYDVLQSRINGLKEAAEKEIWMLARMCQLENKISAVGEPSYRTRISKV KRVRESLQNSLQGRIELIASYARISSMIEIEVEMETDVLAAETASDVDSITEQIEQIMELENLEERWKMQAEASDEAERL LSSQSMPSEEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 570 | 570 | 1.7E-282 | – | |
| Phobius | 1 | 359 | 359 | - | – | |
| Gene3D | 67 | 200 | 134 | 3.6E-9 | ||
| ProSiteProfiles | 107 | 137 | 31 | 5.229 | ||
| ProSiteProfiles | 157 | 191 | 35 | 8.944 | ||
| Phobius | 360 | 383 | 24 | - | – | |
| Phobius | 384 | 388 | 5 | - | – | |
| Phobius | 389 | 410 | 22 | - | – | |
| Phobius | 411 | 571 | 161 | - | – | |
| Coils | 427 | 447 | 21 | - | – | |
| Coils | 530 | 560 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0435700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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