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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0438500 |
| Transcript ID | LotjaGi4g1v0438500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAM domain protein/ABA-responsive-like protein; TAIR: AT5G08350.1 GRAM domain-containing protein / ABA-responsive protein-like protein; Swiss-Prot: sp|Q9FTA0|GEML4_ARATH GEM-like protein 4; TrEMBL-Plants: tr|I3SIE9|I3SIE9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0438500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81166664..81168925) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTAGACACCTTCATTCATTTCTTGTAAGGTTCCTTTGGACAGGTGTTTGCAAGAAATATAAAATTAATCTTTGTTGA TTTTGAAGAGCCAGTTCAAAAATCAGATTCCTGAAAATTCATTCACTGATGAACAATTCTGGTACCTCTCTAGAAAGATT CTATTCTCTTTATACAACTTGTCAATTGACATCACACTGCCAATAACATACTAATTGGGTTGCTGATTCTCTTGTTACTG CAGATAAAGAAGAAACTACAAAGAAGATGGAGCACAAAAAAGCAACAAGCAAGAAAAGAAGCAATTTTGCATGTAGAATT CATGAACATGGTAAGTCATATGTGAAAGAATCTCTGATAGCATGTTTGGATCAGCTTCCCTTTTCTTAGTATTGATTTTG GAATTCAGAAGCTACTCATATAACTTCTTTTCATAAAGGATTTTGGCTTTAGAATAAAGATTTCCAAAACATGAGTTAAA AATGTTGAATGGTAGATTCATTGACTATGTCTATGTGTTTTCTGTGGTGTGGTTGCAGTAAAACTGGGTCCTAAACTGTC TGAGACTGTGAAGGGTAAGTTGAGTTTGGGAGCCAGAATTATACAAGAAGGTGGAAGAGGGAACATTTTCAAGCACATCT TTGGGATGCAAGAAGGAGAGAAACTCTTGAAAGCTTCACAATGCTATTTATACACAACATCTGGTCCAATTGCTGGAGTT CTCTTTATCTCCACTGAAAAGGTTGCATTTTGCAGTGAAAGGCCAATAACTTGCACTTCTGCAGCTGGAGAATTGGTCAG GGTACCTTACAAGGTAGTCTTCATGGTTAGACACCCTCAGCTTTATAGCATGTTCGGATCAACTCTCTTTTATCAAAATT AATTAATTCTAAAATTTAGAAGCTACTTACAAAAGCTTTTTCCCTAAAATTAGTTACGACACTTTAGAATCAATTGTAGA AGAATTTCCAAACACACATTTAGTGTTGTTTGGGACTGCAATGGGAAACCTCATTATTGATTTTATATAAAGCACAAAAC ATGGTGCAGAATTAATTTTCACATGTTTGGTTCTTTCTATCATAATCAATTATGGACTCAAAATTAATTATAGAGAACAC ACCATGTGGTAGCTTTGAGTAAAATCAATTCTCAAAAAAATGATATCAGTTTTTAATGATTGGTGTAAGCATGTGTTTGA TATTAATTTCCATTTTGGTTATTACACAATACACACTCAAAAGCAATTCTAATCAAAGTTATCTAAACAAAATTCTCTTA AGGATTTCACTTTTCTTATAAGTATATACAAACATAAATCACGTTACTTTAGCTCACGTTTACAAGAATCAATTCTGCAA AAAGCTAATCCAAAGACACACTAACCACAAATTATCATTAGTTTTCATATTTCAATTATTGCATTATACTGGTTTCTGAT ATCAAGGTGCATGCTTATATGCAGGTGTTGATACCAGTAGAGAAGATAAAAGAGGTCAATGAAGGGCAGGACGTGAACAA GACAGAACAAAAGTACATAGAGATTGTTACTGGGGATGGTTCTGAATTTTGGTTTATGGGGTTTCTACGTTATGAGAAAG CTTTCATGAATCTTCAGAAAGCTATTTCTAAGTCCAGTTAACACCAAAAAGAGATAATTGTACATTGTTTAGACATACAC AGTTGTTTTCTTTTATGTTAATAGGATTTCGTTGTTCTCTGTACAAAAGAGTTGTGGTTTCATGTCATCCCTAATAGCTT GATGGTTAAGAAGGCTTGGTTAAATTATATTGGTATACCTTGCAAAACAATAATTTTAATAGCACAAGAGTTTACAGGAT CAGCAACACAAGATCAATCATGCTGGTGGTAAGCAGTGAAGCTTCTGATGTGGTTTACTCACTAGCATTTATTCATTAAA TAATGCAGATGGAAAACATAATTTACAAGTGATAAAAATACATGAAAAGGATAAGGGTTACAATATAGATAAGGTTATCC TAATAAATGTAAGTTTAATCTAAACAGAACCACTACATAAGGTCATAAGGTATACTCATGAGAAAGTAATTAATATAATA TAGTTTGGAGTTAGGATCCTGCAATCTTCTAGGCTTCGTTTGGATTGGGGGAAGGGGATGGAGTGGAGCGGAAGGGAGAG AGGGGTTTGAAAGATCCATTGTTTGTGTAATTAAAAAAAGGATGGAATCAGATGGAAACCAATGGTATCAATTCCATTAT GTTCCATTACTTTCCCCCACTT
CDS sequence (LotjaGi4g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAATTCTGATAAAGAAGAAACTACAAAGAAGATGGAGCACAAAAAAGCAACAAGCAAGAAAAGAAGCAATTTTGC ATGTAGAATTCATGAACATGTAAAACTGGGTCCTAAACTGTCTGAGACTGTGAAGGGTAAGTTGAGTTTGGGAGCCAGAA TTATACAAGAAGGTGGAAGAGGGAACATTTTCAAGCACATCTTTGGGATGCAAGAAGGAGAGAAACTCTTGAAAGCTTCA CAATGCTATTTATACACAACATCTGGTCCAATTGCTGGAGTTCTCTTTATCTCCACTGAAAAGGTTGCATTTTGCAGTGA AAGGCCAATAACTTGCACTTCTGCAGCTGGAGAATTGGTCAGGGTACCTTACAAGGTGTTGATACCAGTAGAGAAGATAA AAGAGGTCAATGAAGGGCAGGACGTGAACAAGACAGAACAAAAGTACATAGAGATTGTTACTGGGGATGGTTCTGAATTT TGGTTTATGGGGTTTCTACGTTATGAGAAAGCTTTCATGAATCTTCAGAAAGCTATTTCTAAGTCCAGTTAA
Protein sequence (LotjaGi4g1v0438500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNSDKEETTKKMEHKKATSKKRSNFACRIHEHVKLGPKLSETVKGKLSLGARIIQEGGRGNIFKHIFGMQEGEKLLKAS QCYLYTTSGPIAGVLFISTEKVAFCSERPITCTSAAGELVRVPYKVLIPVEKIKEVNEGQDVNKTEQKYIEIVTGDGSEF WFMGFLRYEKAFMNLQKAISKSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 4 | 182 | 179 | 3.7E-100 | – | |
| PANTHER | 4 | 182 | 179 | 3.7E-100 | ||
| Gene3D | 60 | 181 | 122 | 3.0E-8 | ||
| SMART | 62 | 140 | 79 | 3.5E-13 | ||
| Pfam | 63 | 181 | 119 | 4.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0438500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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