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LotjaGi4g1v0440200.3

Overview

Field Value
Gene ID LotjaGi4g1v0440200
Transcript ID LotjaGi4g1v0440200.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 1,4-alpha-glucan branching enzyme GlgB; TAIR: AT2G39930.1 isoamylase 1; Swiss-Prot: sp|O04196|ISOA1_ARATH Isoamylase 1, chloroplastic; TrEMBL-Plants: tr|A0A151TKF6|A0A151TKF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0440200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81377927..81385369) extracted from Lotus japonicus Gifu genome v1.2.

TTTGAAAACATTACTTCAAAGTGGAAACATATAACCATAGATGGTCGGGTTTATGTAAAAAGAAACTATTTTTGAAGATA TCGGAATGCCCCACTTTCACTTTATTAATCAATCTCAATCATCTTTGTTATTGATGCAACTTGTATTAAAAATGCATTGT GCTAAAGAGCATTCTCCAATTTATATGTTCTGAAAATGTTACTTCAAAGTAGATTCTTGAGACTTCTGGCCAGTTTTGCA GATCTTCCACTTAGATTGTGGGGTCTTAGTAATTTCAGTTCGTTTGTTGTAGAATCAAGTGACAGAGTATATTACTCTTG ATCCGTTGATGAATAAGACTGGCAGTGTCTGGCATGTTTTCCTGAAAGGTGATTTTGGAGATATGCTATATGGATACAAA TTTGATGGCAAGTTTTCTCCTATTGAGGGACACTACTATGACTCTTCTCTTATACTATTGGACCCTTATGCAAAAGTTAG TGGCTCTGAACCCTTCTTCTACTTATTCTTCTTTTAGTTACTAGTAATATATAAATCAACACTAGTGAAGAGCGATACAT GATGAAAACCCCATCTATGGTTAATTATTGGTTTTCTATAAATATCACATTGCAGTGGACCCTAATAATATGCTACTTAT CTGTCTAGGCAGTTATAAGCAGAGGAGAGTTTGGGTCTTTGGGACCTGATGGTAACTGCTGGCCCCAAATGGCTGGCATG GTACCTTCTAATGATGATGAGGTACATTATTTATTATGGTTATTTACTCGAACTTTTCAAAAGCTATATTTCACTTTATT TTTACTTGGTATGCAACTTGTTTAGTTTGACTGGGAAGGAGACTTGCCTCTGAAGTACCCACAAAAGGATCTTATTATAT ATGAAATGCATGTGCGAGGGTTCACAAAGCACGAGTCAAGCAAGACCAAGTTTCCTGGTACATATCTTGGTGTAGTGGAG AAGCTTGACCACTTAAAGGTGAAGTTTCGGATCATTTTCTAAATTACTTAAAAAAGTTCCTTTTGGCATTCTACCAATGG CTATTATGCGAAATTAGTCTAATAGTTTTATAATTTCTTTGTGAAAAATTGTTGATTCTATATATTTATCACGTGGACAG AAAACGTAATTCATCAAAAGAGGAAAATTACATTACACAGAAGATAATGTGTCTTCTAAAAGGAAGAAATATAAATCAAA TAACAGTGCCCACAACTGGTCAATGTATCCTCATGATGGATGCCCTTGACATAAAGCCTTGAACCAAACGCCAAAACGAA GCCATAATGTTCATTTTGTTAATTTGATGCGATAGAAGAGACAGGGTAGACTTGAGTCAAGAAACTTCCAGCATCTTTCT GTCATCAATAATACTGAATAATCAAATTGCACACTTCTGAATCTAATTGTGATGAAATCGTCACTTGTAGAAGGAAGGAC ACATGTATCCTCATTTAAGGCAAAGGAAAGGCATATTCTTATGCAGTGAGTCATCAATGCATGATAGTAAAGGAACTTGA TTATAGAGTCAAAGTGGACTTTGGGCTGAGTCATACTGTCATCCATACTTTTGGCCAATGAGTTTCCCAACCCTGGTGCC TCATGTTATTGCTGATCAAAATTATACCATATAGTTAAGGTCCACTGAAATGGTCATCATCCATACAATTCCCCCATACT GTCAGATCTACAATATTGATATTTCATGAACTTGGGATTGCATTTTTTTATTTTTACACTGCATTCATTGTAGTACTGCA TAACGCATACATGAATGCATAAACTGTTAACTAGTTCATAGTCTAACTGTTTTCATTTGGTGTTTATCATTTTGCAGGAA CTTGGGGTAAATTGTATCGAATTATTGCCATGTCATGAGTTCAACGAGCTGGAGTACTTCAGTTACAATTCTGTACAAGG GGACTATAGGTAAAAGAGATATTTGCTGACAAAATCATGATAATTTTATCACTGACTTCTTGTTATATTGTAATCTTCTG AAATGCTAATCATAGTTTGCCATTTATTATAATATTTGAAATAGCTTTTTAACCTTTGATGCCTTGTATCTTTCAAAGTA TGATGTCATGATCTTTCTTCCAATTTAATAATTTAATCTGATCAACTCATGATCCAATTGGGTGGTACTCTCTACATTTG TGGCTTTGTAAAATTCTTATTTTGGCTTCTCTGTAAGTTTATCTCAAGTATATGATAGTGCTGAATCCTTTTTCTTTTAG GGTCAATTTTTGGGGGTATTCAACTGTCAACTACTTCTCACCAATGATCAGATACTCATCTGCTGGTATACAAAACTGTG GCCGTGACGGGATAAATGAAGTTAAGTTCCTGATCAAAGAGGCGCACAAACGGGGAATAGAGGTAACCAGGATTACATAT TATGTCATTTTGTCAATTGTTTTTTGTTTCTTTGTTGAGAAAAATTGAAACCAAAAGTAGGTGAAAGACTAGCTATACTG CCTAAGGTCTCAGCCCTGTCCCAAGATGGCAATAGAACTCAGCTTAGGAAAGAACGAATAGAGTGATCACTTGAACACTC AGTTCTCTCCCTATAGGCCAATCCCAATATCTTCCCTAGCATTACGATGGGCCTTTCTCTCCCCTTTTTACTACTGCACA TCCTCCTGACCAGCCAACTAACCCTTCACTTTGGGTCAGTTAGGTATTCATACAACAGTCCCTATCATAACAGTGACAGT CACTATCAAGAGTTTTGATCACCTGCAAGGCTGCAACTATCCTCTTTCTCCTCTCATAGACTCTTGACTCTAGTTCCATT CCTATGATTCTTCTTTTAATTATTTTTGAAAAAAATAAACTATCCTTTCATTGCTGTATTGTTGGAACAGGTTATCATGG ATGTTGTTTTCAACCATACAGCTGAAGGGAATGAGAATGGTCCCATTATTTCTTTCAGAGGTGTAGACAACAGTATCTAT TACATGATAGCACCCAAGGTATTCCTCATTATTTTTGTTTCCTCTTTCAGCTGGTTGGTTGGAATTTTTGAAACCTTGGA GGAACTCAAAGGCTGGTAAAATGTAAGAAAGGCGTTCGTGGTAATATTTCCAAAATAACTACTAAACTAATTAACATTGA TCAAATAGTGGTTAGTCTGTAACCACATATTAACTTAACTATCACCTGAGTGATTATATATTCCTAAACTGGAACCACTC ACAAAAATTCTTTTATTTTTGTAATTACCCAAAAGAAAAGCATATGTATCGTCTAATGCAAATTTATTTACATTTAATAG ATAAGAATCCATTTAACTTTAATTGTTTATTCTCATTTATTTGAATGGTAGCAGTGTTATGGATTAGATTAGCTGTTTCC AGCTCTGAAAAGTAGGTCAACACATTATGCATACAGAAGTTTTGGGACACTACATGGTACCAAATTCCAAACTTTAAAGA AGAAAGAAAGTTATTTGAGTGTGCTGCCTAAATCCAATGTTTTTTTTTTATCAAGTTAGTAATTTCTACTTTCCAGCATG ACATCAGCTCAGGATCTGTATTCTGCTGACATGAATAAAACGCCTATTTTGTTTAAAATCTGCATCTTTACTTCTTGAGG CTTGTTGTTATTGTGCAGTTTGGATTTTTATGGCTCTATGGCTATTTCAAATTTATTTATTCTTGTGTGTTTTGTTACTT CTAAGCCATGCACAATGTTAACTTAACCTACTTCCATGTTTTAGGGGGAGTTCTATAACTATTCAGGATGTGGGAACACA TTAAATTGCAACCATCCAGTTGTTCGCCAATTTATAGTGGACTGCTTAAGGTACTCTTACAATGATTACCAGCGGTGTGA CTTTAAATATATCACTTCTAACATATTTGTTTATTGTTATTTGCTCTGGGGTCACAAATTGCTAACATATTAGATTGAAG GCCTTACTATTTGTCTACCATGCAACAGATATTGGGTAACAGAAATGCATGTGGATGGTTTTCGCTTCGATCTTGCTTCT ATTATGACCAGGAGTAGCAGGTTATATACCCTCAAGTGTATTGTTGCTCAAATTTTGCTGGAGTCTGTTGCATCTTTCTG TTCTTATTTTCCTTTTCTTTGTTTGTCACCAGTCTCTGGAATGGAGTTAATGTATTTGGTACTTCAATAGAAGGTGACTT GCTGGCAACTGGAACCCCTCTAGTTAGCCCACCATTAATTGACTTGATCAGTAACGATCCAATACTTCACGGAGTGAAGG TTTCTCAACTTGCATACTCTCTTAAAGTTTTCTTCACTCATTTGGAAGCAGTTAGCTAATATGCTAAGTTTCTTGATTTC CTCTTTATAGCTTATAGCTGAAGCTTGGGATGCTGGAGGCCTCTACCAAGTTGGCACTTTCCCTCACTGGGGTATTTGGT CAGAATGGAATGGGAAGGTCAGTGCAGACATGCAGCTGTTGGATTCATAACTCCATTTATTACGCTGTACTGAAAATAAG ACGATGTGGGAGCACAGCTTGAATGTAACTAACAAGTTTGTTTCAGAAAGAGAACTTGATAACACAACACAATACTGAAG TATCATAAGTTCATCACATCTTGGCATCATGCATATCTAACCTTGTAGCCTTTTATGTGAAGTTGTATGAATAATTGCTT GAGATGTAATTTTATGAAAATAACCTGGTGTCAACCTAAATGAACTTGTCAACACTGGAATGCAGTTAAACTTTGCATGT AATGTATGTTTGTCTCCAATATTTCTTCACTATTACTTTCTCAAATTGTAAGTTCTGATGGAATCAGCTATTTGATGAGT GAATTACTGTAATCTAAACAGCAATGCCATGACTTTTTCAAATGTTCAATCCTGATGAGGAATTTTTTTGGACAATGGAC TCAGGATAGAAGTAGTAAATAAATTTGCGTGGATACACTAGAATGATTTTTCTCCTTTCTTAGATCATTCTACAACATGT ATAATTACTAGGACAAGTGAAGGAGTGATCATATGCACACATTAATCAGAACCTTCTTGTTACCTTATGCAAGCTAACTA TAGACTGTTTTCCTTTGATGAGATGTGTTGATTTCCTCTACATGCACCTGTGTGTTTATTCTTTGCTTCCCATGTAAGTA AATCTCTTTAACTAAATGATTGGCTGTTGCATACTCACCAATTTTTTAAATAATATGTTATCTACGAATTGTATATTATA ATAGCAATTTTTTTGCTATGCATGAACTATTTAATGTGCAAATCTTGCATTTTGCAGTATAGAGACACAGTGCGTCAGTT TGTAAAAGGTACAGATGGCTTTGCTGGAGCATTTGCTGAATGCCTTTGTGGGAGTCCTAATGTATATCAGGTTTGTCTGT TGTCTCATGTCACACTACAATAGAAGATTCTTTTGGATGTAAACTCCCCCATCTATTCTTATTATTGCTGTCGACTTGTC GTAGTCTTTACTGTTGGAACTTGGAATGGTTACCCGTTACTGTTGTTTCAATTTTTTTACATGTAAACATCCTATTTTGC TGTCTTTGAACTTGCTCAATATATTTTACTCTCAGGGGATTAGCATTTATTTCAGCTAAATTTTAGGTTCCGGTCTTTTG TGTGGTTGACATTTTTCTTTTATCTTGGGCACAGGGTGGTGGAAGAAAACCATGGAACAGTATTAACTTTGTATGTACTC ATGATGGCTTCACTCTAGCTGACTTGGTGACCTATAACAACAAGCATAACTTGCCAAATGGAGAAGACAATAATGATGGA GAAAATCATAATAATAGCTGGAACTGTGGACAGGTAGATGTTTAGAACCCTGCTTGATATTTGGTCTTATCATAGAACCT TGACTTGTTGTGGGTTTGCTGTCTATTTTCTCTTATATGTGTCAGTGTATTGTGCATGCATATCTGAGCTTGATTAATTT CTTTATATTTTACTGCAGCACACTTTCTAAATCCTTAAAATGGCATTTTTGAAAGCTTAATCTATGTACTTTGAAGTTAA ATGAGTTAGTTTCACCTTTCTATTGAATTTTAAATTTTATTTCTCAAACTAATGTAGGAGGGGGAGTTTGCCAGTTCCTC AGTGAAGAAATTGAGGAAACGACAAATGCGGAATTTCTTTCTCTCTCTCATGGTTTCCCAGGTAAGGCCTATCAACTGCA CATATAGGCATTTTACAAAATTTGTTTGCACTGTAAGGGCTTCTTTATGTTACATGTGAGCTGATAAGTATTGCACTAAA AATGTTTCTTCATTCCTATGTGGTGTTTTAAGTGATGAGAATTACTTTCGTCAGAAACTCCTATCACAGTATTCAGCAGG GACATCCCATGTGTTTATACGTTCTTCTGATTTTTATGTAGATGTTGTTTACAGGACTGAGCTCTGTTTACTGACTTTCA AATTATCTTATCAGGGAGTTCCGATGATATATATGGGAGATGAATATGGACACACAAAAGGGGGGAACAACAATACCTAT TGTCATGATAACTATGTGATCCTCTTATCTACTAGAATTTTAATTTTTCAATATCACCTTTTGGTTAATTCTGTTAACCC TAACCTTTTTACAGCTTAATTATTTCCAATGGGACATAAAGGAAGAATCATCATCAGACTTCTTCAGATTTTGCTGCCTT ATGACCAAGTTCCGCTAGTAAGTACCTCTTACTTTCTTGGACTTTTGTATTTTTCTCGTATCCTAACGTTGTAGTCCTGC AGTGAATGTGAGTCGCTGGGCTTAGATGACTTCCCAACATCAGATAGACTGCAATGGCATGGTCATTTTCCCGGAAAGCC AGACTGGTCTGAAACTAGCCGTTTTGTGGCTTTTACCATGGTAAAATACTTTTCTTGCCCATATTTAATGGCATGTGGAG GTAACAATTCTGTTGCTGGTAAAAAGCTGTGGGAATCAGTGAATCATGTCTTTTGGATCAATTTCTTATAATCTTCACCT AAAAAGTAGAATGAGGATATGTTTCCAATAACAACTTTGAGGTTATATGTTGGACAAAGCAACACTGTATCTGGCAACAT TAGAATGCCTCCTAATTTCTCCTATATGCCATGTACTAAAGCTGCTAGGTTAAAGAACTTATTTTCCCCTTACGACCTTG GTTTGGATACTCCATAAATGGCTAATTTTCCCTTTGTTTTGGCATGAACATGAACCCAGGTGGATTCAGTAAAGAGAGAA ATTTACATTGCTTTCAATACAAGTCATTTACCTGTCACAATTACCTTGCCAGAGCGTCCTGGATACAGATGGGAACCCCT CGTGGACACCGGCAAGTCTGCACCATATGATTTTCTCACTCCTGACCTTCCTGGGAGAGATATTGCAATACAACAGTATG CTCAGTTTCTTGACGCCAATCTTTATCCCATGCTTAGTTACTCTTCCATCATCCTCTTGCGTACCCCAGATGAAAATGCT TAA 

CDS sequence (LotjaGi4g1v0440200.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATAAGACTGGCAGTGTCTGGCATGTTTTCCTGAAAGGTGATTTTGGAGATATGCTATATGGATACAAATTTGATGG CAAGTTTTCTCCTATTGAGGGACACTACTATGACTCTTCTCTTATACTATTGGACCCTTATGCAAAAGCAGTTATAAGCA GAGGAGAGTTTGGGTCTTTGGGACCTGATGGTAACTGCTGGCCCCAAATGGCTGGCATGGTACCTTCTAATGATGATGAG TTTGACTGGGAAGGAGACTTGCCTCTGAAGTACCCACAAAAGGATCTTATTATATATGAAATGCATGTGCGAGGGTTCAC AAAGCACGAGTCAAGCAAGACCAAGTTTCCTGGTACATATCTTGGTGTAGTGGAGAAGCTTGACCACTTAAAGGAACTTG GGGTAAATTGTATCGAATTATTGCCATGTCATGAGTTCAACGAGCTGGAGTACTTCAGTTACAATTCTGTACAAGGGGAC TATAGGGTCAATTTTTGGGGGTATTCAACTGTCAACTACTTCTCACCAATGATCAGATACTCATCTGCTGGTATACAAAA CTGTGGCCGTGACGGGATAAATGAAGTTAAGTTCCTGATCAAAGAGGCGCACAAACGGGGAATAGAGGTTATCATGGATG TTGTTTTCAACCATACAGCTGAAGGGAATGAGAATGGTCCCATTATTTCTTTCAGAGGTGTAGACAACAGTATCTATTAC ATGATAGCACCCAAGGGGGAGTTCTATAACTATTCAGGATGTGGGAACACATTAAATTGCAACCATCCAGTTGTTCGCCA ATTTATAGTGGACTGCTTAAGATATTGGGTAACAGAAATGCATGTGGATGGTTTTCGCTTCGATCTTGCTTCTATTATGA CCAGGAGTAGCAGTCTCTGGAATGGAGTTAATGTATTTGGTACTTCAATAGAAGGTGACTTGCTGGCAACTGGAACCCCT CTAGTTAGCCCACCATTAATTGACTTGATCAGTAACGATCCAATACTTCACGGAGTGAAGCTTATAGCTGAAGCTTGGGA TGCTGGAGGCCTCTACCAAGTTGGCACTTTCCCTCACTGGGGTATTTGGTCAGAATGGAATGGGAAGTATAGAGACACAG TGCGTCAGTTTGTAAAAGGTACAGATGGCTTTGCTGGAGCATTTGCTGAATGCCTTTGTGGGAGTCCTAATGTATATCAG GGTGGTGGAAGAAAACCATGGAACAGTATTAACTTTGTATGTACTCATGATGGCTTCACTCTAGCTGACTTGGTGACCTA TAACAACAAGCATAACTTGCCAAATGGAGAAGACAATAATGATGGAGAAAATCATAATAATAGCTGGAACTGTGGACAGG AGGGGGAGTTTGCCAGTTCCTCAGTGAAGAAATTGAGGAAACGACAAATGCGGAATTTCTTTCTCTCTCTCATGGTTTCC CAGGGAGTTCCGATGATATATATGGGAGATGAATATGGACACACAAAAGGGGGGAACAACAATACCTATTGTCATGATAA CTATCTTAATTATTTCCAATGGGACATAAAGGAAGAATCATCATCAGACTTCTTCAGATTTTGCTGCCTTATGACCAAGT TCCGCTATGAATGTGAGTCGCTGGGCTTAGATGACTTCCCAACATCAGATAGACTGCAATGGCATGGTCATTTTCCCGGA AAGCCAGACTGGTCTGAAACTAGCCGTTTTGTGGCTTTTACCATGGTGGATTCAGTAAAGAGAGAAATTTACATTGCTTT CAATACAAGTCATTTACCTGTCACAATTACCTTGCCAGAGCGTCCTGGATACAGATGGGAACCCCTCGTGGACACCGGCA AGTCTGCACCATATGATTTTCTCACTCCTGACCTTCCTGGGAGAGATATTGCAATACAACAGTATGCTCAGTTTCTTGAC GCCAATCTTTATCCCATGCTTAGTTACTCTTCCATCATCCTCTTGCGTACCCCAGATGAAAATGCTTAA 

Protein sequence (LotjaGi4g1v0440200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNKTGSVWHVFLKGDFGDMLYGYKFDGKFSPIEGHYYDSSLILLDPYAKAVISRGEFGSLGPDGNCWPQMAGMVPSNDDE FDWEGDLPLKYPQKDLIIYEMHVRGFTKHESSKTKFPGTYLGVVEKLDHLKELGVNCIELLPCHEFNELEYFSYNSVQGD YRVNFWGYSTVNYFSPMIRYSSAGIQNCGRDGINEVKFLIKEAHKRGIEVIMDVVFNHTAEGNENGPIISFRGVDNSIYY MIAPKGEFYNYSGCGNTLNCNHPVVRQFIVDCLRYWVTEMHVDGFRFDLASIMTRSSSLWNGVNVFGTSIEGDLLATGTP LVSPPLIDLISNDPILHGVKLIAEAWDAGGLYQVGTFPHWGIWSEWNGKYRDTVRQFVKGTDGFAGAFAECLCGSPNVYQ GGGRKPWNSINFVCTHDGFTLADLVTYNNKHNLPNGEDNNDGENHNNSWNCGQEGEFASSSVKKLRKRQMRNFFLSLMVS QGVPMIYMGDEYGHTKGGNNNTYCHDNYLNYFQWDIKEESSSDFFRFCCLMTKFRYECESLGLDDFPTSDRLQWHGHFPG KPDWSETSRFVAFTMVDSVKREIYIAFNTSHLPVTITLPERPGYRWEPLVDTGKSAPYDFLTPDLPGRDIAIQQYAQFLD ANLYPMLSYSSIILLRTPDENA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 659 659 0.0
PANTHER 1 659 659 0.0
Gene3D 1 76 76 2.3E-18
Pfam 2 48 47 2.0E-5
SUPERFAMILY 2 88 87 1.57E-17
Gene3D 77 549 473 1.1E-197
SUPERFAMILY 78 541 464 1.28E-124
CDD 81 535 455 0.0
SMART 100 526 427 3.3E-9
Pfam 118 224 107 5.9E-11
Gene3D 550 662 113 1.4E-45
SUPERFAMILY 551 655 105 1.04E-16

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0440200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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