Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0440600 |
| Transcript ID | LotjaGi4g1v0440600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phospholipase A2 family protein; TAIR: AT2G06925.1 Phospholipase A2 family protein; Swiss-Prot: sp|Q8S8N6|PLA2A_ARATH Phospholipase A2-alpha; TrEMBL-Plants: tr|C6TN49|C6TN49_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0440600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81415645..81417581) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAGAATAGAACAAGGCACAAGAAATGATGATAGTATCCCCTGCAGTCACGAGCTGCTACAAAACAAACATTCCAAT CTTGCTTTCTGAGTTCTGTCAACTCTTCTGGACTACAGCCACATAGTCCTCTCCTCTCTTTCACTCACTGTCTCTCTTCC TTTCTTCCTCCTTTTAATCAGAGTCTATAATCAAAACCACTCTTTTTAAAACTTACATTAATTTCACAAAAAATGACTCT AACTCAGTCACTCAGCTATGCTTTCCTCTTCTTTTCTTGCATCAACTTCCTTTCTGTTCCTGTCAGTGCCCTGAATATAG GAGTTGAAACCACTGGATTAACTGTTTCTGTGGTTTGTTTCTTGCTTCATCTATCTAATTCCCAACAATTACTTAAGTTA CAACATAAAAATAAGTTTTTTTTTGTTAATTTTGCTTCATCTGCAGAGCAAAGAGTGCAGCAGCAAATGTGAGTCAAGAT TCTGTTCAGGTAGGACTAGTACTTGTTTGTTTGCTTTCCCATTTTAATTTTGCAACTTGAAAACACTTTGAATTATGGTT TTCAATTTGATTTGTTTAAATTTTGGAATGGCACAGTGCCTCCATTGTTGAGATATGGCAAGTACTGTGGGCTTCTGTAT AGTGGGTGCCCTGGAGAGACTCCTTGTGATGGCCTTGATGCATGTTGCATGAATCATGATCGCTGTGTGCAAATAAAAAA CAGTGAGTTGTTCTACTTCTATACATAATACATCATCATCAATTCCTTGATTCAAACATGTTATATTATACTATGGTTTG GATTGAATTATCAGATTCTGTTCTGTCTGATCAAACTGGGGGGAATTGGAATTGTCCAAGTTCCTTTTGAGTTTTGAGGC TAGATCTTCCATTTGGTTATTTTAATACTGTCTCTTGCTGTTCTTTTTAAAACAAAAGATAAATCATTTATAACATGTTT GGATCAGCTTCTTTTTCCTCATAAATCAATTCTCACATTCTAAAGCTACTCTGCCTCCACATAATTGATTTCGGCTTCAA AATTTTGATTGTAGAAAGATTGAGAAATTACTTTTTGATAAATGTTATTGGAGAGCTGAGTAAGGATAAACATGCGTGTG GCTTTGAAAGCTATGGTTATGAAAGTAATCACTAAATTGATAATGGTGCTATTGCTATATATGCAGATGACTACCTAAGC CAAGAGTGTAGCCAAACATTCATAGAGTGCATGAATAAGTTTAAGAATTCAGGAGCACCTACCTTCAAGGGAAACATGTG TCAAGTGGATGATGTTATTGAAGTCATCAACCTTGTGATGGAAGCTGCATTGCTGGCTGGAAGTGTTTTGCACAAGCCCT AGAGTAACTAAAGTTACCTTCCTTATGTAGGAGTATGTAAGCAGGGACAAGTTGGTTTCATTTTGCATGCAGCTTCCAAG TAATAAACACTGGAATTAAGCAGGTTGTGACTTCTGAGGAAGCAGAATTCACCAAGTGTTGGATTGTTCACCCACCAGTA GGGAACGTGAGCTGGGTTTAGACCATATGCATGAAAATTTAATTTGATTTTAGAATTAAGAAGAACAAAAACTGGCAATC CTTCTTCTGTTTCTACAGTCAAGCAGCTGTTTTGTGTGGAAATTTTTTTCTAGGAATTAAAACAAAGCAGAATCACTATG GTGTGTACCGCAAATGATTGAGTGTTAAAAATTGTGATTATATATTTAAAAAATCTTAATACCGTTGCTTAGGTTGAAAT GAACGCATTTTTAATACTAAGTAGCTAGTAAGAAAAATTAAGTGTGTATTTGAATACCAGCTGAGTGCAATATGCACTGT AATGTGAATAAATGTTCATAATAACTAAAAGAGTTTCATTATTTTTTCGGCTGGAAGTATGTACTGACATTGTATTGATA TTAATGGATATTCAAAC
CDS sequence (LotjaGi4g1v0440600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTAACTCAGTCACTCAGCTATGCTTTCCTCTTCTTTTCTTGCATCAACTTCCTTTCTGTTCCTGTCAGTGCCCT GAATATAGGAGTTGAAACCACTGGATTAACTGTTTCTGTGAGCAAAGAGTGCAGCAGCAAATGTGAGTCAAGATTCTGTT CAGTGCCTCCATTGTTGAGATATGGCAAGTACTGTGGGCTTCTGTATAGTGGGTGCCCTGGAGAGACTCCTTGTGATGGC CTTGATGCATGTTGCATGAATCATGATCGCTGTGTGCAAATAAAAAACAATGACTACCTAAGCCAAGAGTGTAGCCAAAC ATTCATAGAGTGCATGAATAAGTTTAAGAATTCAGGAGCACCTACCTTCAAGGGAAACATGTGTCAAGTGGATGATGTTA TTGAAGTCATCAACCTTGTGATGGAAGCTGCATTGCTGGCTGGAAGTGTTTTGCACAAGCCCTAG
Protein sequence (LotjaGi4g1v0440600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLTQSLSYAFLFFSCINFLSVPVSALNIGVETTGLTVSVSKECSSKCESRFCSVPPLLRYGKYCGLLYSGCPGETPCDG LDACCMNHDRCVQIKNNDYLSQECSQTFIECMNKFKNSGAPTFKGNMCQVDDVIEVINLVMEAALLAGSVLHKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 16 | 153 | 138 | 3.5E-54 | ||
| PANTHER | 16 | 153 | 138 | 3.5E-54 | – | |
| Phobius | 18 | 26 | 9 | - | – | |
| Gene3D | 25 | 154 | 130 | 1.4E-45 | ||
| Phobius | 27 | 154 | 128 | - | – | |
| CDD | 38 | 154 | 117 | 2.37893E-60 | – | |
| SUPERFAMILY | 59 | 152 | 94 | 1.71E-21 | ||
| ProSitePatterns | 84 | 91 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phospholipase A2 activity | Catalysis of the reaction: phosphatidylcholine + H2O = 1-acylglycerophosphocholine + a carboxylate. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Phospholipid metabolic process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. | ||
| Biological process | Lipid catabolic process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Biological process | Arachidonic acid secretion | The controlled release of arachidonic acid from a cell or a tissue. |
Expression pattern of LotjaGi4g1v0440600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…