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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0441500 |
| Transcript ID | LotjaGi4g1v0441500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-aminocyclopropane-1-carboxylate synthase; TAIR: AT4G26200.1 1-amino-cyclopropane-1-carboxylate synthase 7; Swiss-Prot: sp|Q9STR4|1A17_ARATH 1-aminocyclopropane-1-carboxylate synthase 7; TrEMBL-Plants: tr|I1KJU2|I1KJU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0441500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81517410..81519950) extracted from Lotus japonicus Gifu genome v1.2.
AACGGCTATCTACTTCAGCTTCTCTCTTCTATTCCTCTTAATTTGTCTTAACAGAAGCTTTCTGCTTCCTATTATTAAAG ACTTATTTGCAAATAATTAATAAGTCTTTCATTTTTCATTTCCTTTTCCCTTTCTCTTGGCAAGAGTAAGCTTTTGTTAT TATGGGGATTGAGATAGAGCAACCTTGTGTGGAGCTTTCAAAAATTGCAGTTTCTAATACTCATGGAGAAGACTCTCCCT ATTTTGCTGGGTGGAAAGCCTATGATGAAAACCCTTATGATGAAATAACCAACTCCCCAGGAGTTATACAAATGGGATTG GCAGAGAATCAAGTAAGTATATAAGTAATGATATTCAGACATCACACCGAAACTTTTCGGAAGCCTCACATACACTTCAT TTTTCTTCCTATCTTTATATCTTTTTACCACATTTCTTACTTTTAATTTCTCTCTTCTTTTCCTGTGTCACCCTGGATTT GTGGACACTCAAACATTCTAAACACCCCACATACACCTATTTTTTTCTCCAATTTTATTTCTTATCACATCATATATTAT ATATCACGTTAATTAGTTTTTTTCCTTTCTCATATCCATTAGATACCTATATCCAACATTTTCCTATCTCAAATTCAAAA TATAGCAAGAAAGCAAAGCAACATAAGAATCCTAGTTTTGATGACAGCGTCTATACTTAATGAACTAGCTATACTAATAT TCTTATATTGAACCATTCAGGTTTCATTTGATTTGCTGGAGAAGTACTTGGAAGAGCACGCTGAGGCCTTTACCTGGGGA AAAGGGGTTACTAGTTTCAGAGAGAATGCTTTGTTCCAAGATTATCATGGACTTGAATCATTCAGAACTGCAATGGCAAG CTTCATGGAACAAATAAGAGGAGGGAGAGCAAAATTTGACCCTGACAGAGTAGTCCTCACAGCAGGAGCAACTGCTGCCA ATGAGCTCTTAACTTTCATTCTTGCAAACCCAGGAGACGCTTTACTTGTTCCAACCCCTTTCTATCCAGGGTAAGAATGA AGCATGTAGCTATGTACATTAACTAAGAACCTTTTACATAGGTTCAAGTTTTAGTTTTCTTTGGAAACAAGTAACTGCAT GCTTGCTCAAACTAAGTTTCAACATCGCAGTGCACAAAAACAACTTCTCTTAGCTATGATGGTTGTCTACTGACTACTGT AGTTTTAGATTTAATTTTCAGTCATGTATCCAAAGTCCAAACAAGTACTAAACTATTTACTGAACCCACGCGAATGATTT TATATGATATTTTTAAGACTAATCAATTTTCTTCTTCATGTTTTACAGGTTTGATAGAGATTTGAGGTGGAGAACTGGGG TGAACATAGTTCCAATCCACTGTGACAGCTCAAACAACTTTCAAGTCACTCCACGAGCTTTAGAAGCTGCATACAAAAAA GCAGAATCCATGAAAACCAAAGTGAGAGGAGTGCTAATCACAAATCCATCAAACCCTTTAGGTGTAACAATTCAACGCTC AGTTCTAGAGGAAATTCTTGACTTTGTGACTCGAAAAAACATCCACCTTGTCTCAGATGAAATCTACTCAGGCTCAGTCT TCTCCTCCACAGAGTTTGTAAGCATAGCAGAGATCCTTGAAGCTCAAAAATACAAAAATGCAGAGAGAGTTCACATAGTT TATAGCCTCTCCAAAGATCTTGGTCTTCCAGGTTTCAGAGTTGGCACCATTTACTCATACAATGACAAGGTTGTGACCAC AGCAAGAAGAATGTCAAGTTTCACATTAATCTCCTCTCAGACACAGCACCTTTTGGCTACAATGTTATCAGATGAGAAAT TCACTGAGAGTTATATTAAGATTAACAGAGAGAGACTGAGGAAGAGGTACCAAATGATGATTGAAGGTTTGAGAAATGTT GGCATTGAGTGCTTGGAAGGGAATGCAGGACTTTTTTGCTGGATGAATTTGAATCCTTTGTTGGGGAAAAAGCCAACAAG GGAAGGGGAATTGGAGATTTGGAATGCAGTTGTGCATGAAGTGAAATTGAACATCTCTCCAGGATCTTCCTGCCATTGTG ATGAACCTGGTTGGTTCAGGGTGTGCTTTGCAAACATGAGTGAGAAGACACTGGAAGTGGCATTGGAGAGAATACGTAAC TTCATGAAACGAATGACTGACACAAAGGTGTTCTAGTTTACACTAAGGAGTCAATTTCGAATTCCTGTGAATGCAGGGTC TTAGTGGAGAATAACTGTGATGTTATTTGATAATTATATTTCATTGTTACTAGCCTACTATCACTATAATTTGTTTTTTC AAATGGTTCTGTTCTGACCATATTGGTAAATTCTTTTATTTGTGGGTATTATCAGGAAAATTTAACAGATATTCACGTGA AGTGTCCTAGTTGTTCTTGTTCTTGTTTGCTTGCTTTAACTACTTAAGCAAGTTCTTGGAAAGTACTCCTTTTGTATCAA TATTAATGTGAAATGAAAGATGCTGTGTTTGTATTGTATATATGTACTGTTTTTACCACTA
CDS sequence (LotjaGi4g1v0441500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATTGAGATAGAGCAACCTTGTGTGGAGCTTTCAAAAATTGCAGTTTCTAATACTCATGGAGAAGACTCTCCCTA TTTTGCTGGGTGGAAAGCCTATGATGAAAACCCTTATGATGAAATAACCAACTCCCCAGGAGTTATACAAATGGGATTGG CAGAGAATCAAGTTTCATTTGATTTGCTGGAGAAGTACTTGGAAGAGCACGCTGAGGCCTTTACCTGGGGAAAAGGGGTT ACTAGTTTCAGAGAGAATGCTTTGTTCCAAGATTATCATGGACTTGAATCATTCAGAACTGCAATGGCAAGCTTCATGGA ACAAATAAGAGGAGGGAGAGCAAAATTTGACCCTGACAGAGTAGTCCTCACAGCAGGAGCAACTGCTGCCAATGAGCTCT TAACTTTCATTCTTGCAAACCCAGGAGACGCTTTACTTGTTCCAACCCCTTTCTATCCAGGGTTTGATAGAGATTTGAGG TGGAGAACTGGGGTGAACATAGTTCCAATCCACTGTGACAGCTCAAACAACTTTCAAGTCACTCCACGAGCTTTAGAAGC TGCATACAAAAAAGCAGAATCCATGAAAACCAAAGTGAGAGGAGTGCTAATCACAAATCCATCAAACCCTTTAGGTGTAA CAATTCAACGCTCAGTTCTAGAGGAAATTCTTGACTTTGTGACTCGAAAAAACATCCACCTTGTCTCAGATGAAATCTAC TCAGGCTCAGTCTTCTCCTCCACAGAGTTTGTAAGCATAGCAGAGATCCTTGAAGCTCAAAAATACAAAAATGCAGAGAG AGTTCACATAGTTTATAGCCTCTCCAAAGATCTTGGTCTTCCAGGTTTCAGAGTTGGCACCATTTACTCATACAATGACA AGGTTGTGACCACAGCAAGAAGAATGTCAAGTTTCACATTAATCTCCTCTCAGACACAGCACCTTTTGGCTACAATGTTA TCAGATGAGAAATTCACTGAGAGTTATATTAAGATTAACAGAGAGAGACTGAGGAAGAGGTACCAAATGATGATTGAAGG TTTGAGAAATGTTGGCATTGAGTGCTTGGAAGGGAATGCAGGACTTTTTTGCTGGATGAATTTGAATCCTTTGTTGGGGA AAAAGCCAACAAGGGAAGGGGAATTGGAGATTTGGAATGCAGTTGTGCATGAAGTGAAATTGAACATCTCTCCAGGATCT TCCTGCCATTGTGATGAACCTGGTTGGTTCAGGGTGTGCTTTGCAAACATGAGTGAGAAGACACTGGAAGTGGCATTGGA GAGAATACGTAACTTCATGAAACGAATGACTGACACAAAGGTGTTCTAG
Protein sequence (LotjaGi4g1v0441500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIEIEQPCVELSKIAVSNTHGEDSPYFAGWKAYDENPYDEITNSPGVIQMGLAENQVSFDLLEKYLEEHAEAFTWGKGV TSFRENALFQDYHGLESFRTAMASFMEQIRGGRAKFDPDRVVLTAGATAANELLTFILANPGDALLVPTPFYPGFDRDLR WRTGVNIVPIHCDSSNNFQVTPRALEAAYKKAESMKTKVRGVLITNPSNPLGVTIQRSVLEEILDFVTRKNIHLVSDEIY SGSVFSSTEFVSIAEILEAQKYKNAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQHLLATML SDEKFTESYIKINRERLRKRYQMMIEGLRNVGIECLEGNAGLFCWMNLNPLLGKKPTREGELEIWNAVVHEVKLNISPGS SCHCDEPGWFRVCFANMSEKTLEVALERIRNFMKRMTDTKVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 439 | 437 | 7.0E-262 | – | |
| PANTHER | 3 | 439 | 437 | 7.0E-262 | – | |
| SUPERFAMILY | 20 | 435 | 416 | 1.9E-104 | ||
| Gene3D | 37 | 428 | 392 | 4.6E-143 | ||
| Pfam | 49 | 429 | 381 | 1.7E-98 | ||
| PRINTS | 51 | 77 | 27 | 3.1E-94 | – | |
| Gene3D | 71 | 322 | 252 | 4.6E-143 | ||
| PRINTS | 83 | 99 | 17 | 3.1E-94 | – | |
| CDD | 84 | 430 | 347 | 2.01183E-66 | – | |
| PRINTS | 120 | 140 | 21 | 3.1E-94 | – | |
| PRINTS | 142 | 163 | 22 | 3.1E-94 | – | |
| PRINTS | 196 | 220 | 25 | 3.1E-94 | – | |
| PRINTS | 232 | 255 | 24 | 3.1E-94 | – | |
| PRINTS | 267 | 291 | 25 | 3.1E-94 | – | |
| ProSitePatterns | 273 | 286 | 14 | - | ||
| PRINTS | 299 | 322 | 24 | 3.1E-94 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0441500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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