Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444500 |
| Transcript ID | LotjaGi4g1v0444500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G19730.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53; TrEMBL-Plants: tr|I1KPW3|I1KPW3_SOYBN Pectinesterase; Found in the gene: LotjaGi4g1v0444500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81745979..81750698) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAGAGGAACCTGTCCTGTGGCTTAAATTGATCATATCTCTCTCTCTAGACATCACTGGATGATACACCCGTGACCC TTCTCTCTGTCATTGATTCTCTGATTCAGCTTCACTTTCCACTCCCCACATATAAACAATCAAGTACTCACTAACTTGTA TATATAAATAAACCATACCACAACACAACCCAATTTATGTACCACTTTATATTTTATAGTTCCATACTACATTATTCACT TATTCCTTAGCTCACATTCTCTCTGAGAATGTTAAACTTGCATTCCATTTTCTATGCTTTGGTTGTTCTTCTCCTTCTTC TGCAGAATCCCAATACAGCATGGTGCCATACCAAGGGAATTCAAACAAGGCATTTTTCAGGGAAAGGATTATTATCCACC AACATGACCCGGGTCCAAGATTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTTGGTGGTCTTAAACACTCTGTTTT CAGGACAGCCAAAAACAAGCTTTTTCCTTCTCACACTCTGCACGTTTCTAAGAATCATGGTAAAGGAGGATTTTCATCAA TTCAAGCAGCCATTGATTCTCTTCCCTTCATCAATATTGTGAGAGTGGTCATTAAGGTCCATGCAGGGGTTTACACGTAA GTATTAGTATTATATTTCTTATTGTAAGAACATGTTTTCATCAGAATCAATTGTGATAACACGCCACATAAGTTTCACAT TAGAATTGAATTCCGTGACATTCTGGTCTTTTTATTTCGTGTCCTTTGTTTATGACCTTGTCTAAGTATACTTTCTTCAT GTGACACATGGGTTTTGGTGTTTGTCCTGTCTACATTGGTTATTATATTTTTTGTTTTTGTTTGCTAGAAAGTGATAATA ACTTGGTGTCCTTTTCCTTCTGGTGTAAATTCTGTGATAATTGGTCTTTGAGTAATGAAGTTTTTGCAGCTAATGAACTA TCCTTTCTCTAAGCCTTGTCCTCCAAACTTTTTACCCCTTGTTTTCACAACTAGGAATTTTCTAGTAGCACGTTTGATTT CATAATTTGTAAAGAATTCAATACACTTGTAGTTAATAACTAGAAATGATTATAGAGCTATTCAGTAGTGATATTTAGAC ATTTAAAAAATACAAACACTCTAGAGACTCCTCATTTTTCTCCGTATCTTTCTTTTCTTATCATATTAATAATATATCAT ATTTGTTATTTTTCTCTTATCTTTTTCTTTTCTGATTTTAAGTGTTTGTTGGGTGTCCGCATATTTAGGAATAATTTTGC TAGAGCATTTTACCATGTAACCAAACAAGTTGTTCTATGTTTATTGCTGTGACAAGTTGTGAATTTGCTTTTATGTTCTT TTTTAAAAAACATTTACAGGGAAAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACCATACAAGGAGCAGGTGCAGAT AAAACCATAGTTCAATGGGGTGACACTGCACAAACACCTGGAGGGCCAAAAGGCCAGGCACTAGGAACATATGGTTCTGC AACTTTTGCAGTGAACTCACAATATTTCATTGCCAAGAACATCACATTCAAAGTAAGCAACAAGCCCAATTGCTCTGTTT CCATTTTAATCTTGACTCTATCTGTTTTTTCACAAGCAAAAAACTGTGGATACAGAACACTACCCCAGTTCCAGCACCAG GAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATTTCAGCAGACAATGCAGGTTTCTTAGGCTGCAAATTCTTGGGAGCA CAGGACACACTCTATGACCAAGTGGGTAGGCATTACTATAAGGATTGCTACATTGAAGGCTCTGTTGATTTCATTTTTGG AAATGCTCTCTCTCTGTTTGAGGTTAGATTTCTCTCCATAATTCACAGCTGTAACCTTGGATTATTGCTCTTACATTATT TGAGGCTTTGTACTCTACTCTATAATTAATTTAAACCATATCAGTATTACCTAACCAATTTTCATAAAATAATCTAAAAG GAATCTCAATTGTTCCTTTCTTTTATCCACTCAATTAGGCTATTTTCAAAATAGCTAAACAAAATCATAATATGAATAAT GTTTATTGTTTTAAAAGTGTTAACGGTTTTGGTCTTGGTCGACAACCATCTGACATATACATTAATGGTCATTTTTTTAC CAATATTGTTGTTTACGGTGGTTAAAAACCGCGGCTAATCGTGTTTGGATTCCCGGTCACAAAATGTCAAACTCACTATG ACACATCAACCATTTGATCTAAAATCGGAGGGCTCTCATTTAAACAAGTTGATTTTAGGTGTATAATAACCTCTTTAAAA GATCTAATTTAGGTCAAATGGTCATGAACCCTAGTTATCATCAAATGCGCGATTTCTTACGGCAGGAACCCGGGTCCTTG ATAGTCATAGAAGTGGAGTATTTTCACCTTTGAGTTTCTCATTACTCCTGAGGAAAATGCATGTGTTGTGTTGAAACAAA AATGTACCTAGCTCCCTAAGTCTTGTTGTAATTGTGTTGGTAAAAAACATGTTGTGTTATTGATAGGGGTGTCACGTGCA TGCGATAGCACAGAAAGCAGGGGCCCTAACAGCTCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTTGTTC ACTGCAAGGTCACGGGCTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACT TACATGGACAATATCATCATTCCCAAAGGCTGGTATAATTGGGGTGATCCCAACCGTGAAATGTAAGTTCATCACTCCCC TCATCATATTTTCTTAAATTCACTGTAGTCACAATTTTGTAGTCGTCTCATTAGCCTTTTGATCTTTTTCTTTTGTATCT TCCGGGTATCACTATGTGCGAGTGTCTACATATCATAAATGTATAAGATATGACCGGTGAATTTAAAGGGAGTAACCGTT TCATTCATGATTCCAGAAAATTTATAAACATGGTAAAGGTGAGAGTTTTTTTACTAGGATTATCACCCATCTCACTAAAA GGTTATGTTTTGTGGTTTCTTTCTGAATAACACTTTGAAGTACAACCCCTTTTGCACTAATTACTAGCATAGCAGCAAGT CACAACTTCACCACCCCTTTTGGTTTCTCATCCTGCTTCTATCTGGAAAATTTCACACTTTATAAATCACAACTAACATC CTACTTAAATCTTCAATGCTTTTAAAGCTTCTATAGCAAGTGACAAACATACCCACTTAGGCACTTAGAGTCAGCATCCA TCATAATTCTCCATCATTGCATATCAGAATAATGAATGCGTATATTCTCTTGATAAAATAAGGGTAAAGTGTAGAGTAAA GTGTAGCGAGAAAGATGAGACACGTATGGATTCCCACTTTAGCAACCTCTACACTTTTGGTGTAAATCTATGTGTGATGC TTATGCACGTTCATACACAAAGGACTAGAAAAATGAACTTTCTGAAGATTAAGAAATTAGTATGACTTAATGCACGTGTG ACAATTGATTCTAAATATAAAATCAAGGTAAAATCAATTATGGGAAAAAGTTTTTATGAGTAGCTTCGATGTTAGAACTG AAGCGGCTCCCCATAATTGATTCTAAGACACACTATGTTTAGGTACACAGTGAAAAATCACAATGAGACCAATCACAATG GACAACCATAAACTAAGTGAAATTGCTTCTATCCAATGTTTTCCACCCTAAATCCATGCAAACATGCTGTTTGCTTATAT ATATAAGGAAAAGCATCATGCGTATAGGGTCTAAAAAGATCTACCTAATCGTACAGCTTGATCTATTATATATCTTTATA TGCTATACTATATAACTAACTAACTATAGAAACATTGGCATGCGCATGTGAGTGCGTTTCTAATTTGTTTCCATGTTTTT GTATTCATTCTACTTTGTGGTCCACTACCACCACCACCAGGACTGTATTCTATGGACAGTACAAGTGCTCTGGACCAGGA GCAAGCTTTGCCGGAAGAGTATCATGGTCGAGGGAGCTCACTGATGAGGAAGCTAAACCATTTATTTCACTCAGCTACAT AGATGGCTCTGAATGGATCAATTCTTTCTTCTGATTTGAGATGAAAAATTAGCTTGAGTGTCTCTACTGACAAATTTTTT TATGTATAAATATATAGAATAGTTTGATAGTGTCTTTCAGATTTCTCAATCTCTATTTCTTGATTTTCTAATAAAAATAC AAACTTAGTGCTATAAAACTCTCAGTATACGCGAGGTTAAGAGAGGAATTGGATCTACTTTGTGGATCTAATGCAGGCAA CATTACCTTACATTTATTTAAGAGATTGATTTCACGGCTCGAGTCTGTAACCGTAAAATCACACGACAACAACCTTATTG TTGTGTCGTTACTAGTCATCCAATAAGAGCACAATTTTAGGAGTTATCTAAACCACATCCGACGTGCATTTAAGAAAACA AAGATGTAGCTTTACCCTCACATTCAAAATATGAAGCAATTAAAATAAGCTTTGGAGACACATATAACAGGAAACGGTCC AATGATGCTAAGTGATGAGTCAGGACTCAGGAGTAGTTAAACTGTGTTCTCTGACATTATAGATATTCCCTCAGAATGAC TCACCTAGAATCAAATTCCCAATCATTATTTGTTAATTTCAGTTGGGATTTGAATAGGTTGATCTAATATGTAATTGTAT
CDS sequence (LotjaGi4g1v0444500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAACTTGCATTCCATTTTCTATGCTTTGGTTGTTCTTCTCCTTCTTCTGCAGAATCCCAATACAGCATGGTGCCA TACCAAGGGAATTCAAACAAGGCATTTTTCAGGGAAAGGATTATTATCCACCAACATGACCCGGGTCCAAGATTCAGAAC AACAGTTCATGAAATGGGTGAAATTTGTTGGTGGTCTTAAACACTCTGTTTTCAGGACAGCCAAAAACAAGCTTTTTCCT TCTCACACTCTGCACGTTTCTAAGAATCATGGTAAAGGAGGATTTTCATCAATTCAAGCAGCCATTGATTCTCTTCCCTT CATCAATATTGTGAGAGTGGTCATTAAGGTCCATGCAGGGGTTTACACGGAAAAAGTTAACATTCCTCCTTTGAAATCCT TCATAACCATACAAGGAGCAGGTGCAGATAAAACCATAGTTCAATGGGGTGACACTGCACAAACACCTGGAGGGCCAAAA GGCCAGGCACTAGGAACATATGGTTCTGCAACTTTTGCAGTGAACTCACAATATTTCATTGCCAAGAACATCACATTCAA AAACACTACCCCAGTTCCAGCACCAGGAGCAGTTGGAAAACAAGCAGTGGCATTGAGAATTTCAGCAGACAATGCAGGTT TCTTAGGCTGCAAATTCTTGGGAGCACAGGACACACTCTATGACCAAGTGGGTAGGCATTACTATAAGGATTGCTACATT GAAGGCTCTGTTGATTTCATTTTTGGAAATGCTCTCTCTCTGTTTGAGGGGTGTCACGTGCATGCGATAGCACAGAAAGC AGGGGCCCTAACAGCTCAAGGAAGGAACAGTCTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGCAAGGTCACGGGCT CAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTCTCTCGTGTTGTCTTTGCTTACACTTACATGGACAATATCATC ATTCCCAAAGGCTGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAGTACAAGTGCTCTGGACC AGGAGCAAGCTTTGCCGGAAGAGTATCATGGTCGAGGGAGCTCACTGATGAGGAAGCTAAACCATTTATTTCACTCAGCT ACATAGATGGCTCTGAATGGATCAATTCTTTCTTCTGA
Protein sequence (LotjaGi4g1v0444500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNLHSIFYALVVLLLLLQNPNTAWCHTKGIQTRHFSGKGLLSTNMTRVQDSEQQFMKWVKFVGGLKHSVFRTAKNKLFP SHTLHVSKNHGKGGFSSIQAAIDSLPFINIVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADKTIVQWGDTAQTPGGPK GQALGTYGSATFAVNSQYFIAKNITFKNTTPVPAPGAVGKQAVALRISADNAGFLGCKFLGAQDTLYDQVGRHYYKDCYI EGSVDFIFGNALSLFEGCHVHAIAQKAGALTAQGRNSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNII IPKGWYNWGDPNREMTVFYGQYKCSGPGASFAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| PANTHER | 6 | 385 | 380 | 9.8E-237 | – | |
| PANTHER | 6 | 385 | 380 | 9.8E-237 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 385 | 359 | - | – | |
| SUPERFAMILY | 80 | 383 | 304 | 2.72E-90 | ||
| Gene3D | 81 | 384 | 304 | 1.1E-103 | ||
| Pfam | 89 | 377 | 289 | 1.1E-72 | ||
| ProSitePatterns | 240 | 249 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi4g1v0444500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…