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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0445500 |
| Transcript ID | LotjaGi4g1v0445500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Initiator tRNA phosphoribosyl-transferase, putative; TAIR: AT2G40570.1 initiator tRNA phosphoribosyl transferase family protein; Swiss-Prot: sp|Q10181|YAW6_SCHPO Uncharacterized protein C3F10.06c; TrEMBL-Plants: tr|A0A1J7HBJ7|A0A1J7HBJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81814352..81822569) extracted from Lotus japonicus Gifu genome v1.2.
GATGCAAGCCAAAAAGAAAATGAGTTTGATTTCGAGGGTAAAACATTCCAATACAATACAGCATGAATTAGCACCATAAC AAAGGAAAGAAGCCAGGACAATTTTCAGTGTGAATTTCAATACAGCACTCAGCAAAGAAAATAATGCAGCTAATAGTTCA AGTCTTTGGTTTCAAACTGAGCAAAGCTGTAATGCTATGACACATTTTTCAATAAGGTCTCTATTTTTTCTTTATAATAT ACATTCCACCGAAAGTAATTTCAACTTAGCATCAAATAGTTCACCAGGAATAGAATAAAGCAAAGAACAAAAGAATCCAG TGCAACAAAAACTTTCCCCTTTGGCCTTTGCCTTTATCTTCACTGTCACTAACAAGTAACAACAGAAGCAAAGAAGGAAT GGGGTGCTGCTTCCATGGCTCCACAACTATGCCACCCATGGAAAAGAACTCCATGACAACCATACCTGCAAGTGTTGAAG AATTCTCAGGACCCAAAAGTCTCAAACAAGAAGTTCTGATACACATACCAGGATGCAAAGTTCATCTGATGGATGCAGGG GAAGCTCTTGAACTGGCTCAAGGTCAGTTCATGATCATCAAAACCTTGGATGAGAATGTGTCTCTAGCTACAATCATAAA AGTAGGAGATGATCTTCAGTGGCGCTTGACAAAAGATGAGCCAGTAGTGAAGCTTGACCCTCTCCATTACCTGTTCTCCT TGCCTGTGAAAGATGGTGAGCCTCTTAGCTATGGAGTTACCTTTTCAGAAAATGGTTTTGGAAGTTTGAGTTTTCTGGAT TCGTTTCTGAAGGAGCAATGTTGCTTTTCTGGGTTGAATTTAAGTAAGAAGAATAATCTTGATTGGAAGGAGTTTGCTCC GAGGGTTGAAGATTACAATCATTTTCTGGCCAAAGCAATTGCAGGAGGAACTGGTCAGATTGTGAAGGGTATCTTCATCT GCAGCAATGCTTACACCAACAAGGTTTTGTTTTCATGTTGGATTATTGGAGCAATTTAGCTATTTCCTTTTATTTTTCAT TTATTATTTTGTGAATCATGAAACTTACAATTTCATGAGGCTAGAAAATGAATGAAATGTGTGTGATTGTGATAGAAAGT GTGTTGAACAGAAGAGAAAATGGGAAGACGACAAAAGTCGTGTTTGGGTAAATAGCTTAACTCAGCGCGTATGTTAATAA GCACATATCATATAAGCGCTTATTCATAAATTTATTTGAGAAGCTTACTGAAATAAGACTAAGGCCCAGTTTGGAAGAGC TTATTTAAGCTTATCTGACAGCATAAGCTCTTATGTCAGTGTTTGGGAGGGCTTATGCAAACAGCTTATGATCTGCCATA AGCTATTTTCAGCTTATTTTCATAAGCTACTCAGGATAGCTTATGAAAAACAGCTTATGCTTATATACAGCTTATTTTTA ATTTATTTCAATAAATTTTCAAAAATAGCTTATGAACAAGCGCTTATGTCATAAGCGCTTAAGACCATAAGTGCTTAATT AAGCTGTTTTTCCAAACGGGGCCTAAAGTAGTTTATGGATAGGTATAAGAGCTTATGCATAAGCTAATAGTATAAGAAAC TTATGAAAATAAGCTCTGAAGAACTTATAAGTAGGTCTTCCCTGTTTGAAAAAGCTTGTATGAGCTTATTTTACAGTATC AATGCTTATGCAAGTGTTTGAGAGCACTTACTAAATAGCTTATGACCTACATATAAGCTGTATTTAATTTATTTTCATAA GTTACTTAGGTTAGCTTATGAATAAGTGTTTATACCTATTTATAACTTATTTTGAGTCTATTTCAATAGGCTTCTCAAGT TAACTTAAGAATAAGCGTTTATGCGATAAACGTTTATTTCCATAAACACTTAATTAAGTTGTTTACCAAAACGTACAAAA GCTTCTCCAGACACTTGCTTCTTAAGTGTTTATATTATAAAATTAGCTCTTCCAAATCCAGTCTAAAAGCTATATCTGGC TAACTAATTTCTTATCTAAAACTTGTTGGGTGGAAAATCAACAGGTCCAGAAAGGAGGAGAAACGATCCTAAATAGTTCT GCAGATGAGAAAAATGGCGTTGTGGCCAGAGACAGTATGAGCAACAAGACGGCCAGTGCCTCAAAGAAGAACAAGATTAA TAAGAACCTCAAACGGTATTCAAAAACTGACACCATAATACTTATTGCTCATGTGAATGATCTCAATACTTAATTATCTT TCGTATTTGCAATCTAGTGTGAGAAAGCTGTCCAAGATGACAGAAAAATTGAGCAAATCTTTGCTTAATGGTGTTGGCAT AGTTAGTGGTTCAGTGATGGCCCCAGTGGTTAAATCCAAACCAGGAAAGGCATTCCTGAGAATGCTTCCTGGAGAGGTGT TGTTGGCTTCCTTTGATGCAGTTAGTAAGTAAAATCAAGTCAAACACTTCACAACATTACCCTTGTCTCATGTACTGATT CACAATTAATTAAATTAATTTTTCAAATAAATTCAACATCATCCCAACTTCTCTGTTCTCTCCTGATGCTGCAGACAAGG TTCTTGATGCAGCTGAAGCTGCTGAAAAACAAACTCTTTCTGCCACCTCCCAGGCTACATCCAGAATGGTCTCTAACAGG TAAAGGCTGGAAGTTTGCCTGAACATTTTACCATAGTAATAGCAATATTATAGCATGTTTAGATCAACTTTTTTTTGCTC GGAATTAATTCTGGCACTCAGTAACTGTTCAGAGAAGCTTCTTTTTAAAATTGATTCTGACTTTAGAATTCATCGTAGAA AGATTTCCAAACAGGCAAACATATACATGCTATTATTGGTTCCACTTTTCTCTTGACATAACTTCAATATGCCAAGAGAC AATGGTTATGGCATCACTTGCCACATGTAGAGTTATCCTTTATTAGAAATCTCAAATGCCCAAATCTTGATGGGATTTCA TTTGTGGTTCCTTCAAATTATGCTAGGTTTATCAATATATAACTATTTACAATCTCGGTTATTAAACACCTCAACACTAA CGACACCTCATGCAATACACACCATAATTTTCTCTTTATCTCATTCTTCCTATCATATCACACTTGTGTGTCTACCAAAC ATTTTGCTATTGTTTACATTTAACTTCATCTTGGCTTACAGGTTTGGGGAAAATGCTGGGGAAGCTACTGAGCATGTCTT TGCAACTGCGGGACATGCTGCTAACACTGCTTGGAATGTCTTTAAGATACGAAAGGCTATCACTCCAGCTTCTTCAGCAA CCGGTGGAATACTGAAAAGTGCTGCAAAAAATAGAAGTTTTAAATAATAAAATCCAATCAAATTGCCTTGTACTTGGTAT TTAGTACTCCTGGTTAGTGGTTACATTCATTTCAAGCTCTCACTTTAAGAGTTGGTAAGCCCTGAGCTGCTCTGATTATA GAAATAGTAATTGGACAAAGTTGCAAGTCAAATTAAAGATGTCACATGGAAATCAGCTCATGTCAAATCCACAATTCCAA TGGTGTTTGCTTTGTTTTTTAACATTTTTTTAATAAGTACAACATGTTACAAGATTCAAACATAAGGAAACTAAGTTAAA AGAAGGAAGCGCATCATAAATCCTTTGTAGATTTTGAAAGTTATAGATCTCATGTTTTACAAATGATTCAAAATTTTTAG ATGATGATCGATCATATTGCTTGTGAGCTAGACTAGGTTTCCCATAGAAGATCAAGTGATATTGTGATAAGCCTTGGCTT AAGCCTCGTCAAGATGATTTCGCAAAGAAAATCAGGTGAAATCACGATAAGACTTGACTTCAGATCTTCAACATCGTCAA GATGATTCCCCCAAAAAGATAAAGAAATCACATAACTTTATCCTCATCAAGATGATCTTCAGAAAACAACAAGAAATCGC AAGAACTCGACCTCAGCCTTGTCCAAGGTTGAGTTCATGCGGGCAAAGACTTGACCCTAGTTAGGTCCGAAGATGTTTTT CATATGCAAAACGAAATATAGAAATTTATTTTATTTTGAAAGGATAAAGAACTTTAAAGTAGGATATAAAACTTGTTCGT AAAACATATTTAAAAAGTAACATGAATAAACATAATCCTTCATCAAGAATAAATGCGGAGATTTGATAAAAAAAAGTTGT CTACTCACTAAATATGAGATAATATCATAATAGTTTTAGATGACCCAATAATATTTTAACATGTGTCATGAGCTGAAATT TTTTAAGATGCATGTTAAAATATTATTGAGTCACATAAGAATAAGAATAAAGTGATTTTACTCTAGAATTAGATAAAATA AAGTGATTGGTTCTTATAGAGGATATGTGTATTAGAAAAAGAAAAAAAAATCTCTAATAAATTTTTTGTTGCAACTCATA TTAATTTACAGTAATCATATTATATATTCATTAACCTAAAGTTGAGGTTGCATAGCAGCATAGGATTAGAGACTCTGGTT TACAGAGATGGCGGAAGAAGAAGAAGAAGGTGGGATTGGGAAGCTAAGCATTTACAAAGCAGCAAGAAGCATTAAGAGAA GAGACAACACTTTATACAACGCACTCAAATCCATCTACCACGACTCCATCTTCATCGGCGAGATTTCTCAGCTATGGCCT CAGCTTCCTCTTGTCGCCAACCTTCGTTGTGGTCTCTGGTACTCCTCCAATTTCCATTCCACCTGTTACTTCAAATCCAC CGATGGCCACACCAACAACTGCTCCTTCAACACCTCTCGCCTCAACCTCCACCTCGCTCACCTTGCTGGTTCATTCTTTT TTTTTTTCTTCATATTATTATTACTTGAATTGATTGAAGATGGAATTTTGATGCTGGGTTTTGATGTTTGATTCAATTGG GTAGGACAGAAGGGTGGGTGTATGGTTGTTGATTCAACTCGAAGAGGAAAGCGCTTCCCTGACAGCATGTCTAAAACTAT ACCCATTTGGACCTGTGTTCTCAATAGGGCCATTGCCAATTTCAGGAGGGACTTTCATGGTGATTCATCATCACCTGAAT TGATCCAAGTGAGAATGCTACTCTATTTACTTTTCTGCTTCTTCATGATTGAAATATTATTCCACAATGAGTAAATAGTT CATTTAGTCCTAAAAGATGAAAAAATGTGATCAACTTAGTGTGTGTTTTGTATTTACGTTCAAGTTTTCCAAAAGCACAA GAAACATGGATTTGCCAAAAACACATTCAAACGGTTTTGGAATGTGCTCCGAAAGAAATACAATCACAGTATTTAGAATA TGACAAATGTGATTAGTGTTTGTCCTTAAAATGGGTAAATTGAACCTTTTTTATCTTTCAAGGATGAAAATAAACATTTT CTTATACTTTTAGCGATTAATTTGACCGATCACATGTATTTTTGGACCAAAATAACTGCTTACTCTTCCACAATTTTGGT TATTTAATCCAGTATCTGTGTCTGCTTCTTCATAACATCTGTTGTAATTCACTGTTGTTGTAAAACAGGATTCTAATGGC TGTGAATATGATGAGCCTGCTAAGGTTGCAAGAGATGTGTCTTCTGATTGGGATTGCTCCTTGCATCTTCCACTTTGGGT TTCTGGAACAGAGAAAGCTTCCATTGAGGAGCGGTTAGAAGAATGGACTGAAAGACTAAAAGCAAGTGGAGCTGACATTG CTACCCTTGCTGCATGCTTGAAGAAACCTTTACGCCCTCTATGGATTTCACAGAAAACTGTCATCTGGTTAAATGAAGTA CCTCACCATGATTCTTGGGATTTCACGCCCGTCATACTTGTGTCTGCATCCTCAACAATTGGCATAAGCCAACACAGGAC TACCTCTGAGTTTAGCTGGAATTACATACCAGGTGCCGGAGATGATGAAGAAAGCTGGGCTAGGGGTTTATCTCCTGCTC TCTTCTGGAATCATGTATATGACCTTATAAACTCAGGTCCTGATGTGTGTAACCATAAGGTTGCAGATATAGTTGAAAAG AGTAGAGTACAACGAGCTTATAGGGGAGAAATTGCACCCCAGATCAGAGTAAAATCCCTTAACTCAGCTTTCCTTTCACA GGAAGAACCATCGCTAGTTTCTGACATTTCAAACATCAAAATTTACCCTGAGTCTTCTGATGACTTCGCAATGTCTTGGT TGGGTTCGTCTAATTTGGCAGTTGGCACATCTCAAATTGGTAAGCTTACTTAGTTGATGACCTTCTATAATCTTCTGCCG AATTGCTTATGCAGATGCCCTGTCCTCTTGGGTTTATAATTGCATTTTTTTTGGAAGCAGAAGATATGTAAAACGAAAAC ATGATATTACATTTATTCATTCTATGAATAGGACGGACTTATTTTTGTTGCCTTTGTTGTGTAATCAACTTGTGCTCAGC AAAATCATTGAGCAGTGCAATGATTTTACAAGTTTATCTGGTTGAGTGTTCACTGTCCATGTTTGTTGCAGCTGTAGATG CAGCTGATGTTGATTGCATATTGAATTGTGATTGTGAATCCATCACCGTCAGTCTTCCCAGTGCTGGAGCATATTTGCAT CTTCCAATGCTGGTTAGTATGAATTGGAAGGAAAACATGCATTTATATTATTTTCTTTAGAATTTTCCCACTAATTTTAA TTTTTGATGGCCAGACTTCAAAGTTTGATCGATTTTCCTTGTTAAACAATCTTCCCAAAGCAGTGAGCTTTGCAAAATTC AATCTTGGCCAAGGAAAAAGACTGCTAGTTTGTTGCAATAATGGTAAAGGCTCTGAAATGCCCTATGTCTACTTTGTCTA CTTATTTACTGGACTAAGATTTTTGTGAAACCAAACAACATGAATTCATCCGTGTATGTCCTCTTTGTTTAGTAACTTTC AATTTTTATACTGATCACTTAACATGAGGACCTTAGACGTAGAAACTCATGCATATATTACCTTCTTATACTATTCCCTG CCTAATATTTTAATTTAAATTTTCTTTTCAGGTGAAGACATTAGTGTTTGTGTATGCTTAGCAATTTTGATGTCATTGTT TGATGAGAAAGGTACATATCTACATAGCTTTCATGTTGTTACAAAATATTAATTTATGAAGCCCATTTCTCTTAGTATAG AATCAACGCATTTCAGTGGATGAAGAGAAACCGAGGGTTTGGTAGAAAACATTTGATTAGTTTTTACTGAATACTGAAAT ATTGAATGTCAAAATGCATAGGAAAGCTGAAATAAATGATACATAACCATATGAAGTAGGAGTAAATTACATCCATAAAG CTACACCTAAAGTTAGCATTCCATTTCTGTGGTATTTATCTCTGTTAAAAATATTATTGAGATTTGAAACACAATAAGCT TCCTAGTAGAACAAATATGCATTTTTTTTTACCTCTCTGTACTTCCTTTGTTCCTTCCTAATAGGTTTGTGTGTATCTGC ATATTCTTGAATATTTAAAGCTTGATGTTTTTTTAATATCATGGTTATCATTGTGTACCCTTCTCTTTTAGGTAATTTTG ATGATGGGAAATCCTTCAATTTAACACAAGTCACAAAATGGGATATAAGGCGACGGCTTGTATATGTGTGTAAGTTCGCT ACAAATGCTCGACCTTCCAGGGGGAATTTGAGGCAAGTTTTTAACTTTCTTATTGGTGGAAAATGCATTCAACATCTGGA TGCTGCAAGAGATGAGTAATTACAAGGACATGTGAATATCATTGGTCATTTCTTTGGCATCCTCCACCAGATATCTCCCA CCACTCTCATTGCTGCTCAGCACCCTCTACCACCGTCACTGTTTCCGCACGCCCTCCATCAATACTTTCGTGGGTACCAT GCACTGCTGCTGTCCCACGACACCCTCCACCACCACCGCCGCCCAGCACCCTCGGCATTCATCGTTGGGAGTGAGCATGG GATTCGTTGGCACAAGTGTTACATTGTTACTTGTCTTTCGACTTTTTTTGACATTTCTAATGATATTATGGTATTGAAAT TGAATGTAGTCAATTTAAATTTATAATAAAAATTATATGTCAACATTGCTAAGCCCAAGAGATTATTTAGGTATGTTTGC ATATATGCTGGAATTAGTACATTAGCCCTCACTCCACTAGATAAGAATTGTGCGAAAGGAATCTCTTATGAATTAAGATA AAAGTCTATTTACGTTATACTCAAGTTATACTCAATTGATATTTAAACACACATTTAG
CDS sequence (LotjaGi4g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACACCAACAACTGCTCCTTCAACACCTCTCGCCTCAACCTCCACCTCGCTCACCTTGCTGAAGGGTGGGTGTAT GGTTGTTGATTCAACTCGAAGAGGAAAGCGCTTCCCTGACAGCATGTCTAAAACTATACCCATTTGGACCTGTGTTCTCA ATAGGGCCATTGCCAATTTCAGGAGGGACTTTCATGGTGATTCATCATCACCTGAATTGATCCAAGATTCTAATGGCTGT GAATATGATGAGCCTGCTAAGGTTGCAAGAGATGTGTCTTCTGATTGGGATTGCTCCTTGCATCTTCCACTTTGGGTTTC TGGAACAGAGAAAGCTTCCATTGAGGAGCGGTTAGAAGAATGGACTGAAAGACTAAAAGCAAGTGGAGCTGACATTGCTA CCCTTGCTGCATGCTTGAAGAAACCTTTACGCCCTCTATGGATTTCACAGAAAACTGTCATCTGGTTAAATGAAGTACCT CACCATGATTCTTGGGATTTCACGCCCGTCATACTTGTGTCTGCATCCTCAACAATTGGCATAAGCCAACACAGGACTAC CTCTGAGTTTAGCTGGAATTACATACCAGGTGCCGGAGATGATGAAGAAAGCTGGGCTAGGGGTTTATCTCCTGCTCTCT TCTGGAATCATGTATATGACCTTATAAACTCAGGTCCTGATGTGTGTAACCATAAGGTTGCAGATATAGTTGAAAAGAGT AGAGTACAACGAGCTTATAGGGGAGAAATTGCACCCCAGATCAGAGTAAAATCCCTTAACTCAGCTTTCCTTTCACAGGA AGAACCATCGCTAGTTTCTGACATTTCAAACATCAAAATTTACCCTGAGTCTTCTGATGACTTCGCAATGTCTTGGTTGG GTTCGTCTAATTTGGCAGTTGGCACATCTCAAATTGCTGTAGATGCAGCTGATGTTGATTGCATATTGAATTGTGATTGT GAATCCATCACCGTCAGTCTTCCCAGTGCTGGAGCATATTTGCATCTTCCAATGCTGACTTCAAAGTTTGATCGATTTTC CTTGTTAAACAATCTTCCCAAAGCAGTGAGCTTTGCAAAATTCAATCTTGGCCAAGGAAAAAGACTGCTAGTTTGTTGCA ATAATGGTGAAGACATTAGTGTTTGTGTATGCTTAGCAATTTTGATGTCATTGTTTGATGAGAAAGGTAATTTTGATGAT GGGAAATCCTTCAATTTAACACAAGTCACAAAATGGGATATAAGGCGACGGCTTGTATATGTGTGTAAGTTCGCTACAAA TGCTCGACCTTCCAGGGGGAATTTGAGGCAAGTTTTTAACTTTCTTATTGGTGGAAAATGCATTCAACATCTGGATGCTG CAAGAGATGAGTAA
Protein sequence (LotjaGi4g1v0445500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPTTAPSTPLASTSTSLTLLKGGCMVVDSTRRGKRFPDSMSKTIPIWTCVLNRAIANFRRDFHGDSSSPELIQDSNGC EYDEPAKVARDVSSDWDCSLHLPLWVSGTEKASIEERLEEWTERLKASGADIATLAACLKKPLRPLWISQKTVIWLNEVP HHDSWDFTPVILVSASSTIGISQHRTTSEFSWNYIPGAGDDEESWARGLSPALFWNHVYDLINSGPDVCNHKVADIVEKS RVQRAYRGEIAPQIRVKSLNSAFLSQEEPSLVSDISNIKIYPESSDDFAMSWLGSSNLAVGTSQIAVDAADVDCILNCDC ESITVSLPSAGAYLHLPMLTSKFDRFSLLNNLPKAVSFAKFNLGQGKRLLVCCNNGEDISVCVCLAILMSLFDEKGNFDD GKSFNLTQVTKWDIRRRLVYVCKFATNARPSRGNLRQVFNFLIGGKCIQHLDAARDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 18 | 447 | 430 | 4.1E-105 | ||
| PANTHER | 23 | 445 | 423 | 9.2E-141 | ||
| Pfam | 23 | 238 | 216 | 2.0E-55 | ||
| Coils | 111 | 131 | 21 | - | – | |
| Gene3D | 291 | 443 | 153 | 2.3E-11 | ||
| SUPERFAMILY | 309 | 440 | 132 | 3.21E-7 | ||
| CDD | 312 | 389 | 78 | 8.51684E-9 | – | |
| Pfam | 333 | 442 | 110 | 4.5E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Charged-tRNA amino acid modification | The covalent alteration of an amino acid charged on a tRNA before it is incorporated into a protein, as in N-formylmethionine, selenocysteine or pyrrolysine. | ||
| Molecular function | TRNA A64-2'-O-ribosylphosphate transferase activity | Catalysis of the transfer of a phosphoribosyl group from 5'-phosphoribosyl-1'-pyrophosphate to position 64 of initiator tRNA. |
Expression pattern of LotjaGi4g1v0445500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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