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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0445500 |
| Transcript ID | LotjaGi4g1v0445500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Initiator tRNA phosphoribosyl-transferase, putative; TAIR: AT2G40570.1 initiator tRNA phosphoribosyl transferase family protein; Swiss-Prot: sp|Q10181|YAW6_SCHPO Uncharacterized protein C3F10.06c; TrEMBL-Plants: tr|A0A1J7HBJ7|A0A1J7HBJ7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0445500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81818839..81822050) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAGAAGAAGAAGAAGGTGGGATTGGGAAGCTAAGCATTTACAAAGCAGCAAGAAGCATTAAGAGAAGAGACAA CACTTTATACAACGCACTCAAATCCATCTACCACGACTCCATCTTCATCGGCGAGATTTCTCAGCTATGGCCTCAGCTTC CTCTTGTCGCCAACCTTCGTTGTGGTCTCTGGTACTCCTCCAATTTCCATTCCACCTGTTACTTCAAATCCACCGATGGC CACACCAACAACTGCTCCTTCAACACCTCTCGCCTCAACCTCCACCTCGCTCACCTTGCTGGTTCATTCTTTTTTTTTTT CTTCATATTATTATTACTTGAATTGATTGAAGATGGAATTTTGATGCTGGGTTTTGATGTTTGATTCAATTGGGTAGGAC AGAAGGGTGGGTGTATGGTTGTTGATTCAACTCGAAGAGGAAAGCGCTTCCCTGACAGCATGTCTAAAACTATACCCATT TGGACCTGTGTTCTCAATAGGGCCATTGCCAATTTCAGGAGGGACTTTCATGGTGATTCATCATCACCTGAATTGATCCA AGTGAGAATGCTACTCTATTTACTTTTCTGCTTCTTCATGATTGAAATATTATTCCACAATGAGTAAATAGTTCATTTAG TCCTAAAAGATGAAAAAATGTGATCAACTTAGTGTGTGTTTTGTATTTACGTTCAAGTTTTCCAAAAGCACAAGAAACAT GGATTTGCCAAAAACACATTCAAACGGTTTTGGAATGTGCTCCGAAAGAAATACAATCACAGTATTTAGAATATGACAAA TGTGATTAGTGTTTGTCCTTAAAATGGGTAAATTGAACCTTTTTTATCTTTCAAGGATGAAAATAAACATTTTCTTATAC TTTTAGCGATTAATTTGACCGATCACATGTATTTTTGGACCAAAATAACTGCTTACTCTTCCACAATTTTGGTTATTTAA TCCAGTATCTGTGTCTGCTTCTTCATAACATCTGTTGTAATTCACTGTTGTTGTAAAACAGGATTCTAATGGCTGTGAAT ATGATGAGCCTGCTAAGGTTGCAAGAGATGTGTCTTCTGATTGGGATTGCTCCTTGCATCTTCCACTTTGGGTTTCTGGA ACAGAGAAAGCTTCCATTGAGGAGCGGTTAGAAGAATGGACTGAAAGACTAAAAGCAAGTGGAGCTGACATTGCTACCCT TGCTGCATGCTTGAAGAAACCTTTACGCCCTCTATGGATTTCACAGAAAACTGTCATCTGGTTAAATGAAGTACCTCACC ATGATTCTTGGGATTTCACGCCCGTCATACTTGTGTCTGCATCCTCAACAATTGGCATAAGCCAACACAGGACTACCTCT GAGTTTAGCTGGAATTACATACCAGGTGCCGGAGATGATGAAGAAAGCTGGGCTAGGGGTTTATCTCCTGCTCTCTTCTG GAATCATGTATATGACCTTATAAACTCAGGTCCTGATGTGTGTAACCATAAGGTTGCAGATATAGTTGAAAAGAGTAGAG TACAACGAGCTTATAGGGGAGAAATTGCACCCCAGATCAGAGTAAAATCCCTTAACTCAGCTTTCCTTTCACAGGAAGAA CCATCGCTAGTTTCTGACATTTCAAACATCAAAATTTACCCTGAGTCTTCTGATGACTTCGCAATGTCTTGGTTGGGTTC GTCTAATTTGGCAGTTGGCACATCTCAAATTGGTAAGCTTACTTAGTTGATGACCTTCTATAATCTTCTGCCGAATTGCT TATGCAGATGCCCTGTCCTCTTGGGTTTATAATTGCATTTTTTTTGGAAGCAGAAGATATGTAAAACGAAAACATGATAT TACATTTATTCATTCTATGAATAGGACGGACTTATTTTTGTTGCCTTTGTTGTGTAATCAACTTGTGCTCAGCAAAATCA TTGAGCAGTGCAATGATTTTACAAGTTTATCTGGTTGAGTGTTCACTGTCCATGTTTGTTGCAGCTGTAGATGCAGCTGA TGTTGATTGCATATTGAATTGTGATTGTGAATCCATCACCGTCAGTCTTCCCAGTGCTGGAGCATATTTGCATCTTCCAA TGCTGGTTAGTATGAATTGGAAGGAAAACATGCATTTATATTATTTTCTTTAGAATTTTCCCACTAATTTTAATTTTTGA TGGCCAGACTTCAAAGTTTGATCGATTTTCCTTGTTAAACAATCTTCCCAAAGCAGTGAGCTTTGCAAAATTCAATCTTG GCCAAGGAAAAAGACTGCTAGTTTGTTGCAATAATGGTAAAGGCTCTGAAATGCCCTATGTCTACTTTGTCTACTTATTT ACTGGACTAAGATTTTTGTGAAACCAAACAACATGAATTCATCCGTGTATGTCCTCTTTGTTTAGTAACTTTCAATTTTT ATACTGATCACTTAACATGAGGACCTTAGACGTAGAAACTCATGCATATATTACCTTCTTATACTATTCCCTGCCTAATA TTTTAATTTAAATTTTCTTTTCAGGTGAAGACATTAGTGTTTGTGTATGCTTAGCAATTTTGATGTCATTGTTTGATGAG AAAGGTACATATCTACATAGCTTTCATGTTGTTACAAAATATTAATTTATGAAGCCCATTTCTCTTAGTATAGAATCAAC GCATTTCAGTGGATGAAGAGAAACCGAGGGTTTGGTAGAAAACATTTGATTAGTTTTTACTGAATACTGAAATATTGAAT GTCAAAATGCATAGGAAAGCTGAAATAAATGATACATAACCATATGAAGTAGGAGTAAATTACATCCATAAAGCTACACC TAAAGTTAGCATTCCATTTCTGTGGTATTTATCTCTGTTAAAAATATTATTGAGATTTGAAACACAATAAGCTTCCTAGT AGAACAAATATGCATTTTTTTTTACCTCTCTGTACTTCCTTTGTTCCTTCCTAATAGGTTTGTGTGTATCTGCATATTCT TGAATATTTAAAGCTTGATGTTTTTTTAATATCATGGTTATCATTGTGTACCCTTCTCTTTTAGGTAATTTTGATGATGG GAAATCCTTCAATTTAACACAAGTCACAAAATGGGATATAAGGCGACGGCTTGTATATGTGTGTAAGTTCGCTACAAATG CTCGACCTTCCAGGGGGAATTTGAGGCAAGTTTTTAACTTTCTTATTGGTGGAAAATGCATTCAACATCTGGATGCTGCA AGAGATGAGTAA
CDS sequence (LotjaGi4g1v0445500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAAGAAGAAGAAGGTGGGATTGGGAAGCTAAGCATTTACAAAGCAGCAAGAAGCATTAAGAGAAGAGACAA CACTTTATACAACGCACTCAAATCCATCTACCACGACTCCATCTTCATCGGCGAGATTTCTCAGCTATGGCCTCAGCTTC CTCTTGTCGCCAACCTTCGTTGTGGTCTCTGGTACTCCTCCAATTTCCATTCCACCTGTTACTTCAAATCCACCGATGGC CACACCAACAACTGCTCCTTCAACACCTCTCGCCTCAACCTCCACCTCGCTCACCTTGCTGGACAGAAGGGTGGGTGTAT GGTTGTTGATTCAACTCGAAGAGGAAAGCGCTTCCCTGACAGCATGTCTAAAACTATACCCATTTGGACCTGTGTTCTCA ATAGGGCCATTGCCAATTTCAGGAGGGACTTTCATGGTGATTCATCATCACCTGAATTGATCCAATCTGATTGGGATTGC TCCTTGCATCTTCCACTTTGGGTTTCTGGAACAGAGAAAGCTTCCATTGAGGAGCGGTTAGAAGAATGGACTGAAAGACT AAAAGCAAGTGGAGCTGACATTGCTACCCTTGCTGCATGCTTGAAGAAACCTTTACGCCCTCTATGGATTTCACAGAAAA CTGTCATCTGGTTAAATGAAGTACCTCACCATGATTCTTGGGATTTCACGCCCGTCATACTTGTGTCTGCATCCTCAACA ATTGGCATAAGCCAACACAGGACTACCTCTGAGTTTAGCTGGAATTACATACCAGGTGCCGGAGATGATGAAGAAAGCTG GGCTAGGGGTTTATCTCCTGCTCTCTTCTGGAATCATGTATATGACCTTATAAACTCAGGTCCTGATGTGTGTAACCATA AGGTTGCAGATATAGTTGAAAAGAGTAGAGTACAACGAGCTTATAGGGGAGAAATTGCACCCCAGATCAGAGTAAAATCC CTTAACTCAGCTTTCCTTTCACAGGAAGAACCATCGCTAGTTTCTGACATTTCAAACATCAAAATTTACCCTGAGTCTTC TGATGACTTCGCAATGTCTTGGTTGGGTTCGTCTAATTTGGCAGTTGGCACATCTCAAATTGCTGTAGATGCAGCTGATG TTGATTGCATATTGAATTGTGATTGTGAATCCATCACCGTCAGTCTTCCCAGTGCTGGAGCATATTTGCATCTTCCAATG CTGACTTCAAAGTTTGATCGATTTTCCTTGTTAAACAATCTTCCCAAAGCAGTGAGCTTTGCAAAATTCAATCTTGGCCA AGGAAAAAGACTGCTAGTTTGTTGCAATAATGGTGAAGACATTAGTGTTTGTGTATGCTTAGCAATTTTGATGTCATTGT TTGATGAGAAAGGTAATTTTGATGATGGGAAATCCTTCAATTTAACACAAGTCACAAAATGGGATATAAGGCGACGGCTT GTATATGTGTGTAAGTTCGCTACAAATGCTCGACCTTCCAGGGGGAATTTGAGGCAAGTTTTTAACTTTCTTATTGGTGG AAAATGCATTCAACATCTGGATGCTGCAAGAGATGAGTAA
Protein sequence (LotjaGi4g1v0445500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEEEEGGIGKLSIYKAARSIKRRDNTLYNALKSIYHDSIFIGEISQLWPQLPLVANLRCGLWYSSNFHSTCYFKSTDG HTNNCSFNTSRLNLHLAHLAGQKGGCMVVDSTRRGKRFPDSMSKTIPIWTCVLNRAIANFRRDFHGDSSSPELIQSDWDC SLHLPLWVSGTEKASIEERLEEWTERLKASGADIATLAACLKKPLRPLWISQKTVIWLNEVPHHDSWDFTPVILVSASST IGISQHRTTSEFSWNYIPGAGDDEESWARGLSPALFWNHVYDLINSGPDVCNHKVADIVEKSRVQRAYRGEIAPQIRVKS LNSAFLSQEEPSLVSDISNIKIYPESSDDFAMSWLGSSNLAVGTSQIAVDAADVDCILNCDCESITVSLPSAGAYLHLPM LTSKFDRFSLLNNLPKAVSFAKFNLGQGKRLLVCCNNGEDISVCVCLAILMSLFDEKGNFDDGKSFNLTQVTKWDIRRRL VYVCKFATNARPSRGNLRQVFNFLIGGKCIQHLDAARDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 4 | 509 | 506 | 6.7E-154 | ||
| PANTHER | 12 | 507 | 496 | 1.6E-192 | ||
| Pfam | 22 | 300 | 279 | 1.1E-93 | ||
| Coils | 173 | 193 | 21 | - | – | |
| Gene3D | 353 | 505 | 153 | 2.9E-11 | ||
| SUPERFAMILY | 371 | 502 | 132 | 4.18E-7 | ||
| CDD | 374 | 451 | 78 | 2.04011E-8 | – | |
| Pfam | 395 | 504 | 110 | 5.5E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Charged-tRNA amino acid modification | The covalent alteration of an amino acid charged on a tRNA before it is incorporated into a protein, as in N-formylmethionine, selenocysteine or pyrrolysine. | ||
| Molecular function | TRNA A64-2'-O-ribosylphosphate transferase activity | Catalysis of the transfer of a phosphoribosyl group from 5'-phosphoribosyl-1'-pyrophosphate to position 64 of initiator tRNA. |
Expression pattern of LotjaGi4g1v0445500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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