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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0446800 |
| Transcript ID | LotjaGi4g1v0446800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CRS2-associated factor 1, chloroplastic; TAIR: AT2G20020.1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein; Swiss-Prot: sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic; TrEMBL-Plants: tr|K7L4R1|K7L4R1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0446800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81937391..81941443) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAACGACAACGTTTTCACACTTCCCTCTATAACTCAACTGAGAAATGGGAAGTTGATTATCTTCTTCTCCATGGCT CTGAAGCTCGCCACTCGTTTCTCCATCTTCCCGCCACCACTCTACCCGAACCCGAATCCGAACCCATCCACGGAGCTCCG ATTCTCCCTCTCAACCTCCGCCACCGCCAACAATGCCGGCCAAACATCCCACCCCACCAGCAAAGACCCACGAAACCCCA CCGTCGACCAGCAATCGCACCCGGCGTTTAGGTTTTCGAACATCCCCAAATCTAAACCGAGACCGTTGACCACCGCACCG GAAAACATCAAGATCAGCGACGACGGACTCTCCTACGTGGTTGACGGTGCCCCCTTCGAGTTCAAGTATAGCTACACCGA AACCCCCAAGGTTAAGCCTCTCAAAATGCGTGAAGCGCCATATGTTCCGTTCGGACCGGTCACCATGCCCAGACCGTGGA CTGGCCGTGCCCCGCTTCCTCCGAGCAAGAAGAAGCTGAAGGAGTTCGATTCCTTCGTGCTTCCGCCTCCGCACAAGAAG GGTGTTAAGCCGGTTCAGTCGCCTGGTCCATTTGTTCCGGGGAGCAGCCCCAGGTACGTGCGGTCCAGGGAGGAGGTTTT GGGTGAGCCATTGACGAAGGAGGAGGTTAATGACTTGGTTAAAAGCTCCATGAAATCTGACCGCATACTCCATATGGGTC TGCTACTTTTTCTTTATCTTCTTCTTGTTGTTCATTCTTTTGTGTGCTAATTTTGAATTGAGAGTTCTGTATTCACTTTA CTGAGGGTGCTAATGGAATGCATGGTTCTGTGTTTTTCTGCTTCAGGCAGGGATGGTTTCACGCATAACATGTTGGATAA TATACATGCTCATTGGAAGCGGCGGAGGGTGTGCAAGATAAAGTGCATAGGAGTGTGCACAGTTGACATGGATAATGTGT GCCAGCAGTTAGAGGTTAGTTTCTTCTGCTTTTAATTCTCTGATGATTATTCATTAGCTAGGTGTGTTTTGAAACAGCTT AGTTAAGTGTTTGGGTTGGGGGTAATAAACACTTATCGCATAACTAATTCATAAGATTATTTGAGAATCTTTTTGAAATA AGCTCGAAATAGCTTACATGTAGGCATAACTGCATTAGTACTTATTCATAAGCTAATATGAACATCAGAACAACATATGA AAATAAACTCAAAAGCTTATAGGTAGGTCATAAGTCATTTTCATAAGTTCACACAAACACTTGCGTAGGCGCTTACACTA AAGTATAAGCTCAAATAAACTCTTTTAAAACCACTACTTTAATAGGCTAAATCAATTTATCTTGAGAACTAAGAAGTTTT GGAGATAATAATTCAGCGGGTTCCCAATGTGTGTTTCTGCATAGTATTTTACTTTTTGTTGCTTGTCTTTCTATACATTC ATGATAATAGGTCGGCTAGTCATACTCATACTGGAGATACCCTTGACCATTGGTATCTTGATTTTTTTGCTGATGCCTGG AAAACTCTTCATTGGCAACTTCCTTTCTTTGGTTTTGTTTCTTATTCTTCATGATGATTGACTTTGCTATAATTTACTTG TGTGCATTGGCTATGCTCCATGATATTCTTCGATTTAAAGAACTCAATCTTGTTTATTTGTAGAGCAAGTTTCTTTGGGT GGATATACTCATTTCCTCATATATCTTACATCCCTCAATTACCACCATTGCTGGTGATGACGTAAGGGAGTGAGGGAGAA ACAAAAGGGGGGGGGGGCGAGGGGAGATGGTGATCAGGGAAATGCTAGATCTCTGAGGAAATGAAGATATCCAAACGATG TTTGCCCTTTATTATTATGTTCTTTTGTCATATGTTATCTGCTTTGCCAGGAAAAGACAGGAGGGAAAGTCATTCGCAGA ATGGGTGGTATACTGTACCTTTTCCGAGGCAGAAACTACAATTATAAAACCCGTCCGCATTTTCCTCTGATGTTATGGAA ACCTGTTCCTCCAGTATACCCCAGGCTAATTCCGCGAGTTCCGGAAGGTCTAACACCAGAACAAGCATATGAAATGCGTC AAAAGGGAAGGACATTGACTCCCATATGCAAGCTAGGTATCTTTTAAGGATGTTCATTACAGTTTAACAATGAAAGAAAC ATATGTTGTACTAGTTATCTTCATCCTGTCTGTCATTTTTCTGATGCACATACTTGTTTATGGGCTGATTATTTTTCTTG TTGCAGGTAAAAATGGTGTTTATTTTAACCTTGCAAATAATGTCAGAGAGGCATTTGAAGAGTGTGAACTAGTGCGTATA AACTGTCAAGGACTAAATAGAAGTGACTATCGCAGGATTGGAGCAAAACTAAGGGTATAACCAATTTATTAAAATTTTTA GTTTAGTTTTTGTTTAGTTTTGGTTTTATGTTATAGAATTGGCACATGTCTTTTTGTTTTTGTTAATGAGGTATGAGGAT GCTATTTTTACACCTTTTTTCCCCATCTATTATTTGACTGTAGGATCTTGTTCCATGCACATTGATTTCATTTGAAAATG AGCACATACTTATGTGGAGAGGACTAAATTGGAAGTCCTCTTTAGCTGATCTTGGAGATGACTGTGGGGAATCCAATAAT AAAATTGATAATGACAGTAGAAGTTTCAAAACACTACCTTCAGAATCCCCAGAATTCTCAGCACCGTGTCCACCGAAAAA TCCAGCAGAGCATGTGAGCAATTTATCGGTTGAGACTAGCATTTCCTCTACTTCAAATGATGTGACTTTGGATAAGGTTG AGGTACCACATCCCACCGAAAAGAGCGAGCAGTCTGCGTGTGTGACTATTAATGCTTCACTTACAAAAACCTCCGAAGCT GAAACAACAAATGATGCCACGGGTTCCTATGGTGAGCCAGAACCTTGCAGTAGTACCAGTCCAAGTGTGACCACATCATA CTATGATAGCCATGCTGAGCGCCCCTCAAAAGCTACGAGTCATAGCCATGGAACTGAGGATATAATGGATAGCAAAAGCA GCTGCAGTGATGGTCTTTCTGCTTCATTTTCGGGATCAGATCGGATGCTATCATCTAGTGAGAATGATATTAATGGCATG GTAGACCCTCATGCTGATAGTCTGCTAGGTAATTCAGGTACTTCAGATGTTAGTCGGCCATCAAGGTCTGATGCCCCGTG TATGGAGAGAATTACATTACTGTTGGAGCAAGCTGTTGAGAAAGGCAGTGCTCTTGTCTTAGATAATGATTCTTTGGATG CCGACAATATTTATCAAACCACAGTTTCCCTTGCCAAATCAGCTCCACCTGAACCGATTTTCACAAAACATTGGAAGGTT GCGGAGCAAAGAAGTGACAAGCGACAAGGTTCAACTCTGGAGACAAAAGAAACTACCACTGTTGTAGCTAAAACTAGTGG CATGGAGATAGGTAAATGGGAGAATAGCTCTAAAATTCCAAAAATTGGCATGCAAAAGGGTAAAAGGGAGAAGAGTTCTA AAATTCCAAGAAGAGATAACTTTGATGAGCAATTACTGAATATTGTACCACAGGGAACATTAGGAGTTGATGAACTTGCT AAACTTTTAACATGATACTAGCTGTAATTATCAGAATTTCCCACGCCATCAGAGTGTATTCTTTTCATTTGTATAATACT AGTGCATTTGTTAACCATATAATGATAGCATGTTATTCTGATGTCCCTGTCCTTTGCATTACTTAGGTGACTGACTTTAC ACAGTATTATTCACGTATTGTCTTAATATGATTTCTTGGCCAGTAATCATTTGTTAACATAATGATCATAATGATTACTA TGTTCATAATTGAAGATTTAGGAATTAAAAGTCAACCAAAGACTGACTTTTGAGGTTTATTCCTGTTGGATTTTGTTAAA TATTTCATTAGAGACCACGGGCAACTACCTCCGACAATCATTTTCCTTTATTTTTTTATTTTTTATCATATCACTTATTT CACACACGCACATTTATATATTCTTTCTTTTATTTTCACTTTTTTATTTGATT
CDS sequence (LotjaGi4g1v0446800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTGAAGCTCGCCACTCGTTTCTCCATCTTCCCGCCACCACTCTACCCGAACCCGAATCCGAACCCATCCACGGA GCTCCGATTCTCCCTCTCAACCTCCGCCACCGCCAACAATGCCGGCCAAACATCCCACCCCACCAGCAAAGACCCACGAA ACCCCACCGTCGACCAGCAATCGCACCCGGCGTTTAGGTTTTCGAACATCCCCAAATCTAAACCGAGACCGTTGACCACC GCACCGGAAAACATCAAGATCAGCGACGACGGACTCTCCTACGTGGTTGACGGTGCCCCCTTCGAGTTCAAGTATAGCTA CACCGAAACCCCCAAGGTTAAGCCTCTCAAAATGCGTGAAGCGCCATATGTTCCGTTCGGACCGGTCACCATGCCCAGAC CGTGGACTGGCCGTGCCCCGCTTCCTCCGAGCAAGAAGAAGCTGAAGGAGTTCGATTCCTTCGTGCTTCCGCCTCCGCAC AAGAAGGGTGTTAAGCCGGTTCAGTCGCCTGGTCCATTTGTTCCGGGGAGCAGCCCCAGGTACGTGCGGTCCAGGGAGGA GGTTTTGGGTGAGCCATTGACGAAGGAGGAGGTTAATGACTTGGTTAAAAGCTCCATGAAATCTGACCGCATACTCCATA TGGGCAGGGATGGTTTCACGCATAACATGTTGGATAATATACATGCTCATTGGAAGCGGCGGAGGGTGTGCAAGATAAAG TGCATAGGAGTGTGCACAGTTGACATGGATAATGTGTGCCAGCAGTTAGAGGAAAAGACAGGAGGGAAAGTCATTCGCAG AATGGGTGGTATACTGTACCTTTTCCGAGGCAGAAACTACAATTATAAAACCCGTCCGCATTTTCCTCTGATGTTATGGA AACCTGTTCCTCCAGTATACCCCAGGCTAATTCCGCGAGTTCCGGAAGGTCTAACACCAGAACAAGCATATGAAATGCGT CAAAAGGGAAGGACATTGACTCCCATATGCAAGCTAGGTAAAAATGGTGTTTATTTTAACCTTGCAAATAATGTCAGAGA GGCATTTGAAGAGTGTGAACTAGTGCGTATAAACTGTCAAGGACTAAATAGAAGTGACTATCGCAGGATTGGAGCAAAAC TAAGGGATCTTGTTCCATGCACATTGATTTCATTTGAAAATGAGCACATACTTATGTGGAGAGGACTAAATTGGAAGTCC TCTTTAGCTGATCTTGGAGATGACTGTGGGGAATCCAATAATAAAATTGATAATGACAGTAGAAGTTTCAAAACACTACC TTCAGAATCCCCAGAATTCTCAGCACCGTGTCCACCGAAAAATCCAGCAGAGCATGTGAGCAATTTATCGGTTGAGACTA GCATTTCCTCTACTTCAAATGATGTGACTTTGGATAAGGTTGAGGTACCACATCCCACCGAAAAGAGCGAGCAGTCTGCG TGTGTGACTATTAATGCTTCACTTACAAAAACCTCCGAAGCTGAAACAACAAATGATGCCACGGGTTCCTATGGTGAGCC AGAACCTTGCAGTAGTACCAGTCCAAGTGTGACCACATCATACTATGATAGCCATGCTGAGCGCCCCTCAAAAGCTACGA GTCATAGCCATGGAACTGAGGATATAATGGATAGCAAAAGCAGCTGCAGTGATGGTCTTTCTGCTTCATTTTCGGGATCA GATCGGATGCTATCATCTAGTGAGAATGATATTAATGGCATGGTAGACCCTCATGCTGATAGTCTGCTAGGTAATTCAGG TACTTCAGATGTTAGTCGGCCATCAAGGTCTGATGCCCCGTGTATGGAGAGAATTACATTACTGTTGGAGCAAGCTGTTG AGAAAGGCAGTGCTCTTGTCTTAGATAATGATTCTTTGGATGCCGACAATATTTATCAAACCACAGTTTCCCTTGCCAAA TCAGCTCCACCTGAACCGATTTTCACAAAACATTGGAAGGTTGCGGAGCAAAGAAGTGACAAGCGACAAGGTTCAACTCT GGAGACAAAAGAAACTACCACTGTTGTAGCTAAAACTAGTGGCATGGAGATAGGTAAATGGGAGAATAGCTCTAAAATTC CAAAAATTGGCATGCAAAAGGGTAAAAGGGAGAAGAGTTCTAAAATTCCAAGAAGAGATAACTTTGATGAGCAATTACTG AATATTGTACCACAGGGAACATTAGGAGTTGATGAACTTGCTAAACTTTTAACATGA
Protein sequence (LotjaGi4g1v0446800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALKLATRFSIFPPPLYPNPNPNPSTELRFSLSTSATANNAGQTSHPTSKDPRNPTVDQQSHPAFRFSNIPKSKPRPLTT APENIKISDDGLSYVVDGAPFEFKYSYTETPKVKPLKMREAPYVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLPPPH KKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIK CIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMR QKGRTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILMWRGLNWKS SLADLGDDCGESNNKIDNDSRSFKTLPSESPEFSAPCPPKNPAEHVSNLSVETSISSTSNDVTLDKVEVPHPTEKSEQSA CVTINASLTKTSEAETTNDATGSYGEPEPCSSTSPSVTTSYYDSHAERPSKATSHSHGTEDIMDSKSSCSDGLSASFSGS DRMLSSSENDINGMVDPHADSLLGNSGTSDVSRPSRSDAPCMERITLLLEQAVEKGSALVLDNDSLDADNIYQTTVSLAK SAPPEPIFTKHWKVAEQRSDKRQGSTLETKETTTVVAKTSGMEIGKWENSSKIPKIGMQKGKREKSSKIPRRDNFDEQLL NIVPQGTLGVDELAKLLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 13 | 84 | 72 | - | – | |
| MobiDBLite | 23 | 67 | 45 | - | – | |
| PANTHER | 36 | 738 | 703 | 4.0E-268 | – | |
| PANTHER | 36 | 738 | 703 | 4.0E-268 | – | |
| MobiDBLite | 159 | 180 | 22 | - | – | |
| ProSiteProfiles | 191 | 287 | 97 | 18.722 | ||
| SUPERFAMILY | 192 | 286 | 95 | 4.05E-24 | ||
| Gene3D | 192 | 289 | 98 | 9.1E-11 | ||
| SMART | 193 | 276 | 84 | 5.1E-18 | ||
| Pfam | 193 | 276 | 84 | 8.1E-20 | ||
| ProSiteProfiles | 309 | 405 | 97 | 17.578 | ||
| SMART | 311 | 394 | 84 | 5.8E-18 | ||
| Pfam | 311 | 394 | 84 | 1.9E-14 | ||
| Gene3D | 311 | 404 | 94 | 5.2E-9 | ||
| SUPERFAMILY | 311 | 400 | 90 | 7.46E-23 | ||
| MobiDBLite | 413 | 445 | 33 | - | – | |
| MobiDBLite | 492 | 527 | 36 | - | – | |
| MobiDBLite | 492 | 598 | 107 | - | – | |
| MobiDBLite | 528 | 544 | 17 | - | – | |
| MobiDBLite | 545 | 572 | 28 | - | – | |
| MobiDBLite | 692 | 713 | 22 | - | – | |
| MobiDBLite | 697 | 713 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0446800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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