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LotjaGi4g1v0448400.1

Overview

Field Value
Gene ID LotjaGi4g1v0448400
Transcript ID LotjaGi4g1v0448400.1
Lotus japonicus genome version Gifu v1.2
Description Cleavage stimulation factor subunit 2; TAIR: AT1G73840.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9M9G6|CTF64_ARATH Cleavage stimulating factor 64; TrEMBL-Plants: tr|C6T790|C6T790_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0448400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:82078517..82083655) extracted from Lotus japonicus Gifu genome v1.2.

AATCCAACCCAGGAACATCTCACAATTCATGTCAACAAGATCTTCGAATACACTAGATTTTGTCAAATGACTAGAAACAA AATCTTTTTTTCTTAAAATCATAAATAAATAAAACACTTAGAATTGACTCTCACAAAAGTTACGAGTGAATGCCCAAAGA GGAAGATTGAGGCCTTTCCAAATATCAGCTTCAATCACGGTGAAGTATACTGTATGTATATACTCTCGAATGAAAACTCC CATGGTTCCAATCATGCAAGCTCTATAGTTCCATACTTCTGGTGTCTTTGTGAACCCAAGAAATGGAGCTTTAAATTCCG GCTGTACTTTTGGAAACTCTACACCAGCAGGGGCTTTGCTGCTGCTTGGACACAGAAGAAGGAAATCCTGTTCTTGTGAG TTGCTGATCTATTCAAATAACTACCAGATCTGCAAGCAGCACCCACATCACCATCAACGACAGAGCACCCAGATTTGCAA GCAGCAAACGGTAAAGTTCACATCTTTATCTTTATGAGGGAAACAGATCAAAAATTAGTGGTTGGGTCGAGTTCTGCAAG CTCTCGATCGTTTCTTCTTCTCTTCTCCTTCACGCCGTAGCCACAAGCCACCATCCCCCATGGGATTGGTTGTGCAGTGG CGATTTGGGATTGCAGGTGGTTTGATGGCGCTGGATGAAGGGGATTTTTTTATGGTTAGAGAGAACTAGGGTTTTCTTTG GGGAAGAAGATGGGTAGGTGAAGGTTGGAGTTTTGGGTGGCTAGCTAGTATTTTTTTGGGGGGAAGAAGAAGGTTGGGGA AGGAGATGTCTAGAACCTGAAGAAGATTTGAAAGGAAGGAGCGGTGGTGGGGATGAAGGAGGAGTGGTGGTGGTTGAGGG AGAGGGACTAAAATTGGGTAAATAGCCAAGTTGGTCCCTGAATGTGTCCACCGCCTTCAACTTCGTCCCTGAACTTTCAA AATGACGCTCGTGGTTCCTGAATGTGTCAAATCTCCCTCATCAGCAGTCCCTGGTTTAAAAAAAACTAACACCGTTAACG GAAGTGTTACTCAGTCCCTGAATCTGAAAAAAAATTATTTCTCTCCCCAATCTTCCTCTACCTCTACCTCTCCCCACCAC CATCACCCTCTCTCCATCTTCTTCATCCTTCTTCTTCTTCCCACCGACATCCCCTCCTTCTCACACTCTCCCTCATGAAG ACTAAACCAGAGAGAAGTAGCGTGTAAAAGGCAAAATTGACAACCTGGGTATCTTAAAATTGGAAACTTTAACCACCAGC TGAGATTGTGGTGCTGAGTAACACAGATGAAAAATCAAGGAGAACTCATAAAGCTATAAACCATAAACACAAAAAAAAAA GAGGAATTAAGAGAAAGAGGGGTATACACAGAGTAATGAGACAGTCGACACCCTCACACAGACACAATCTTCTTCCATCC TTATTCATAAATAAAAGCAAACCCCTTTCTGAATTGTTTTGTTTGAATTGCTGGGTGTTGTTCTGCCAATAGGTGCGTGG GTAGAAAGTGGTAGAGTTGAGTTAGTGTGGTGGTTTCCCCTCTGGCTTCTGCATGTTTCGATTTGGGATTTGTCCCTTTG TATTTCTGGGTTGTGATGCCCCTAAAAAAAATAAGAAATCTGGTTCTTCTTTCTTCAATTCTCCAAGGTTGTTCATCAAT CTCTCGCCAAAAGGTTTCACCGAAGCTGAACACATGATGAGTCCTACCTCCATACTCAACAGCAGGCCATTCTCTGGGTT GAAGAACCCGTTCTGGTGTGAATCAAACAGCCCACAAACCCAACTCTGGGCTCTACGTCGCGGTGGTGGTCGACAGCGAG ATGACGCTCCTCGTCGGCAATTCCAGTAGAGACGCCTACGCCAAATCCAAAGCCCATGTTTCCGAGCAGATCTAGAGTGA TGAGACAGAACCATCGCCGCCGCCAACATCTCCGGCGAGGTGAGCTCTTCTGTGTGTATTCATGGTGCAAACTGATTATT TTTCTCTTTCTGAAATCTTTGAGTGAATTTTAGGGGGCTGCTAGGTTTGGGTATGTATTTTCTTAGTTTTTAGATGAAGA TGTGTGAAGAAGATGAAGGTCTAATATGTTTGTTGAAGGAAATTTTTGTTTTTCTAAGTTTTTCATGATTTAAATGAAAA TGTTGAAGAAGATGCAGAAGATGAATGACTGATGAAGGTTTCTGGGATTTAATTTTTTAATTTTTAGTTTATTTTTTTCC CAGGGATGAAGGACTAAATTGAAGCCTTTCAAAAGTTCATACAAAAAAAAAATTCCAAGTCACACTTCCGTTAACGGTGT TAGTTTTTTTTAAACCAGGGACTGCTGATGAGGGAGATTTGACACATCCAGGGACCACGAGCGTCATTTTGAAAGTTCAG GGACGAAGTTGAAGGCGGTGGACACATTCAGGGACAAACTTGGCTATTTACCCGACTAAAATTGCAATGATTGAAATCTA ATTTCAATTAAAAAATTATTATTTTTAATTTATATATTATTAAAAAAATGTCACATCAGCTTTCCGTTAGTTTTTGGATG AAATCTGGATGGAAAATCAATTTTGCAAACCGAGGTATTCGTCGGGGAAGTCTAATGCAATTGATTTTTGTTGGGGACCA GAATCGTGAGAAATGTATATGTGGGGGACCAAATGTGCAATTAAGCCTATATTTATTTATCCCGGCTTATATTGCACCGA AAAAAATACCCCCTTATTGTTCCGACCGATTATGAAGCCGTCAGACCTAAAAGCGTTTCAGCTTATCAAAAGGCTTGCAT CGGAAAGAGACGTTGCGTCCCAACTTATAATCGATCGGCCACAAGAAGATCGAGACACAATGAATTAAGATGGGTCAGCC AAAGGCGGCTTACATGATCAAAAGTCTCACTTAAAGGGACTTTCCACACTCTTGCAGAGAAAACTGCTAAGGACACTGAG TCTATTATTCATTTACGAAACATACTATTCAATCAAGGATTGATACCTGAGTCCAACAGAGATTCGGAGATTCTCTCCCA TACATTGATTTTGACTTGAGCGTCAGAGTGTCTTCTGCATGTATCCTCGCTATATAACCAACAACACCATTGCCGCCTTT AGGACACTCACCAGTCACCACTGCACACCGTCGTCAACTTCGAGAGAGGATCTCGCTAGATTCTCAGTGCACTGTACACT TATATCATTTATTTTTCGTGCACCATTCATAGACCAATCATTTTGAAACTAGACCAAACATAAAAACGTGTTAAAAAAAG TGTTGTTAGCACTCCTTAGATTTATTTATTTAATTTTTTTTTTTGGTCAACTAGATTTATTTTTATTATTTTGGACAATT ATAAGAGGACTTATTAAACATTTTTTTGGTCCTAAGATTTATTGAACTTTCAATTTGGGTCTACTAATATACACGAGCAA AGCCCAGTTACTTGGACAAAAAAGCCATAATAATCTTAGCCTACTAGGCCCAAACGTAACATATTTATATCTATCAATAA TAAATCGTAACAATATTGTCTGTTGATGAAATTTTCAGCCAGGTGCAAAACCTCCTGCTAGTGTTGGATCCGCGTTCACA CAAGGGCAACCTCCACTTCCAAGTCAGCAATCATCTCAGTCACCTTATCCGGTATGCTTAGCTACAACTGATGGTTTAGA TATAAACCGTGTTGGTACTGTGAATTTTATAGTAATGGACTTAGGCTCTATGACACCTGCATTATGTTAGGAACTTGGTA TTTTATTAGAAAGAATAGGTAAAATCCCTCTAATTATGGTTTTATGGATCTTCGAGGATATGCACCTCCTTACCCTAAGG CTTCAAATCCCTCTCAAATACGTTAAGTAACAGTGAGAGACTGAGGGAAGAAGCTATGTTTTCTATCTTAGAGTTCCTCA GATAATTTTAAAAATCTATTTTTTAACAAAATTTAGAGTTAACTGGTATGTGTTCTCTACACTTTAGTATGATATTGTGT AATTTTCAGATATGGATCCTGTTTGGACACATAGCTGTACAAAATTTATTCCGGACACATTATCATTGCTCTGTTTGAAT TTTACAATTGAGGTACTTAGGTAGTTTTGGTTAAATGATGTCCATTTGATCACCCCAAGTTGATTTTGGTGATTTGACTG ATAGAAATAAAGCTAAACAACATGAATGTAGAAGCAGTATCGTCCATGTACTCTGTGCTTTATAGTAATTGGTTATTCAG ATGCTAAATCATGCCATACTTGCTTGTAGGTTGGAAATATGCCTTTTGGGCATGATTTTGGCAATCAAGGTGGAAATGCA ATGCAAGTTGATAGAGTGTCTAGGATGCATGGTGGTCACTCAGAAAACTTAGCACAGCTCTCTGGTCCTATGGGGCCACC ATCTTTAGTTTCTGGTCAGATGGGTGCTGCTAATCAGCCTCTTCGGCCTCCTGGGGTAATTCTTGTGAATTAACATTAGT TTGTTGATTAATTTCTGCAGTCTGTTGACATCCTCCTCTTTGTGTAAATACAGTTGACACCAGATATGGAGAAGGCACTG CTTCAGCAGGTCATGAGTCTCACGCCCGAGCAGATAAATCACCTGCCCCCAGAACAAAGAAATCAAGTGCTGCAGCTGCA ACAGATGTTGCGTCAATGATGCAATGTGTATATTATAAACTAAGAAAGTTAGGCATGCTTAATCCTTCCAATTTAGCATA AGGTTATTATTCTTTTATGATGAGGTTTTGTGGAAGTTGATACAGAATTCTTGTGTAACAAATTGTAGACCTTTATTATT ATTGTTGATTTTGGCACCAATTAAATCATATAGGCCTTTGTTCTACTTTTACGGAAAACCAAAACTCTTTCCCAACTCCG TAACCCTTTCCGTGTGATAATAATGATAATTCGGTGCTGAATTTATATATTCTCCACAATTTGATTTCTTTCGTCCAATA AAGTTGCTAAAAGAGTCTTACACACTGATATGAAGAAACAAACTGAACACTGAGTTATTAGTATTCGGGGTGAAAGAGCT TGATTGTGTTATGTTTTTTTGGTGATCAAAATAGTGTTTCACCCTTGGATTGAGAACAAGGTGCCTGACACTCATTTTAC AAGGTAAAATAAGCATCAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0448400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTTTTGGGCATGATTTTGGCAATCAAGGTGGAAATGCAATGCAAGTTGATAGAGTGTCTAGGATGCATGGTGGTCA CTCAGAAAACTTAGCACAGCTCTCTGGTCCTATGGGGCCACCATCTTTAGTTTCTGGTCAGATGGGTGCTGCTAATCAGC CTCTTCGGCCTCCTGGGTTGACACCAGATATGGAGAAGGCACTGCTTCAGCAGGTCATGAGTCTCACGCCCGAGCAGATA AATCACCTGCCCCCAGAACAAAGAAATCAAGTGCTGCAGCTGCAACAGATGTTGCGTCAATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0448400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPMGPPSLVSGQMGAANQPLRPPGLTPDMEKALLQQVMSLTPEQI NHLPPEQRNQVLQLQQMLRQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47866
3 100 98 2.1E-41 –
MobiDBLite
mobidb-lite
27 62 36 - –
Gene3D
G3DSA:1.10.20.70
61 100 40 4.2E-10
IPR038192
Pfam
PF14304
66 100 35 1.5E-11
IPR026896

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0031124
Biological process MRNA 3'-end processing Any process involved in forming the mature 3' end of an mRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0448400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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